Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 MIR548I3-201ENST00000408378 149 ntBASIC0.69□□□□□ -2.3
VPS28Q9UK41 RNA5SP222-201ENST00000411039 105 ntBASIC0.69□□□□□ -2.3
VPS28Q9UK41 MTND5P15-201ENST00000434246 349 ntBASIC0.69□□□□□ -2.3
VPS28Q9UK41 SNRPGP8-201ENST00000454064 226 ntBASIC0.69□□□□□ -2.3
VPS28Q9UK41 snoU13.18-201ENST00000459483 104 ntBASIC0.69□□□□□ -2.3
VPS28Q9UK41 AL122017.1-202ENST00000570612 319 ntTSL 5 BASIC0.69□□□□□ -2.3
VPS28Q9UK41 AC022709.1-201ENST00000615967 87 ntBASIC0.69□□□□□ -2.3
VPS28Q9UK41 AL365265.1-201ENST00000621045 234 ntBASIC0.69□□□□□ -2.3
VPS28Q9UK41 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.68□□□□□ -2.3
VPS28Q9UK41 Y_RNA.118-201ENST00000363300 101 ntBASIC0.68□□□□□ -2.3
VPS28Q9UK41 Y_RNA.176-201ENST00000363815 109 ntBASIC0.68□□□□□ -2.3
VPS28Q9UK41 RNU4-17P-201ENST00000365598 141 ntBASIC0.68□□□□□ -2.3
VPS28Q9UK41 MIR573-201ENST00000384964 99 ntBASIC0.68□□□□□ -2.3
VPS28Q9UK41 MIR520H-201ENST00000385126 88 ntBASIC0.68□□□□□ -2.3
VPS28Q9UK41 MIR548F4-201ENST00000408515 105 ntBASIC0.68□□□□□ -2.3
VPS28Q9UK41 HMGN1P33-201ENST00000432945 451 ntBASIC0.68□□□□□ -2.3
VPS28Q9UK41 RNU2-11P-201ENST00000459191 187 ntBASIC0.68□□□□□ -2.3
VPS28Q9UK41 RNU6-453P-201ENST00000516819 85 ntBASIC0.68□□□□□ -2.3
VPS28Q9UK41 AC004812.1-201ENST00000540773 146 ntBASIC0.68□□□□□ -2.3
VPS28Q9UK41 Y_RNA.7-201ENST00000362352 102 ntBASIC0.67□□□□□ -2.3
VPS28Q9UK41 Y_RNA.440-201ENST00000384120 114 ntBASIC0.67□□□□□ -2.3
VPS28Q9UK41 MIR606-201ENST00000384851 96 ntBASIC0.67□□□□□ -2.3
VPS28Q9UK41 RNU6-381P-201ENST00000391259 108 ntBASIC0.67□□□□□ -2.3
VPS28Q9UK41 AL138752.1-201ENST00000452964 351 ntBASIC0.67□□□□□ -2.3
VPS28Q9UK41 MIR4676-201ENST00000583078 72 ntBASIC0.67□□□□□ -2.3
VPS28Q9UK41 MIR6740-201ENST00000618268 113 ntBASIC0.67□□□□□ -2.3
VPS28Q9UK41 Y_RNA.352-201ENST00000365439 102 ntBASIC0.66□□□□□ -2.3
VPS28Q9UK41 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC0.66□□□□□ -2.3
VPS28Q9UK41 SNORA79-201ENST00000408376 140 ntBASIC0.66□□□□□ -2.3
VPS28Q9UK41 RNU6-602P-201ENST00000411155 105 ntBASIC0.66□□□□□ -2.3
VPS28Q9UK41 AC015818.7-201ENST00000428754 109 ntBASIC0.66□□□□□ -2.3
VPS28Q9UK41 AC087499.7-201ENST00000441958 109 ntBASIC0.66□□□□□ -2.3
VPS28Q9UK41 MIR18B-201ENST00000454574 71 ntBASIC0.66□□□□□ -2.3
VPS28Q9UK41 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC0.66□□□□□ -2.3
VPS28Q9UK41 RNA5SP121-201ENST00000516537 101 ntBASIC0.66□□□□□ -2.3
VPS28Q9UK41 MIR4804-201ENST00000581683 73 ntBASIC0.66□□□□□ -2.3
VPS28Q9UK41 Y_RNA.812-201ENST00000610788 101 ntBASIC0.66□□□□□ -2.3
VPS28Q9UK41 Y_RNA.784-201ENST00000613803 101 ntBASIC0.66□□□□□ -2.3
VPS28Q9UK41 Y_RNA.787-201ENST00000616522 101 ntBASIC0.66□□□□□ -2.3
VPS28Q9UK41 Y_RNA.780-201ENST00000617336 101 ntBASIC0.66□□□□□ -2.3
VPS28Q9UK41 Y_RNA.801-201ENST00000619005 101 ntBASIC0.66□□□□□ -2.3
VPS28Q9UK41 AC010332.2-201ENST00000613083 1904 ntBASIC0.66□□□□□ -2.3
VPS28Q9UK41 Y_RNA.145-201ENST00000363527 102 ntBASIC0.65□□□□□ -2.31
VPS28Q9UK41 Y_RNA.262-201ENST00000364641 102 ntBASIC0.65□□□□□ -2.31
VPS28Q9UK41 SNORA36.2-201ENST00000384004 127 ntBASIC0.65□□□□□ -2.31
VPS28Q9UK41 RNU6-472P-201ENST00000384299 107 ntBASIC0.65□□□□□ -2.31
VPS28Q9UK41 MIR588-201ENST00000384900 83 ntBASIC0.65□□□□□ -2.31
VPS28Q9UK41 EBAG9-207ENST00000531677 777 ntTSL 1 (best) BASIC0.65□□□□□ -2.31
VPS28Q9UK41 AC018659.1-201ENST00000551083 169 ntBASIC0.65□□□□□ -2.31
VPS28Q9UK41 AC004817.2-201ENST00000561794 651 ntBASIC0.65□□□□□ -2.31
VPS28Q9UK41 MIR302B-201ENST00000362188 73 ntBASIC0.64□□□□□ -2.31
VPS28Q9UK41 RNU6-653P-201ENST00000363074 106 ntBASIC0.64□□□□□ -2.31
VPS28Q9UK41 RNU6-1309P-201ENST00000363305 108 ntBASIC0.64□□□□□ -2.31
VPS28Q9UK41 RNU6-728P-201ENST00000365375 104 ntBASIC0.64□□□□□ -2.31
VPS28Q9UK41 Y_RNA.354-201ENST00000365448 111 ntBASIC0.64□□□□□ -2.31
VPS28Q9UK41 Y_RNA.416-201ENST00000384014 113 ntBASIC0.64□□□□□ -2.31
VPS28Q9UK41 Y_RNA.542-201ENST00000384641 111 ntBASIC0.64□□□□□ -2.31
VPS28Q9UK41 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC0.64□□□□□ -2.31
VPS28Q9UK41 RNU6-1165P-201ENST00000410119 107 ntBASIC0.64□□□□□ -2.31
VPS28Q9UK41 snoU13.2-201ENST00000459201 104 ntBASIC0.64□□□□□ -2.31
VPS28Q9UK41 RNU4-54P-201ENST00000516428 129 ntBASIC0.64□□□□□ -2.31
VPS28Q9UK41 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC0.64□□□□□ -2.31
VPS28Q9UK41 AL117187.1-201ENST00000555482 181 ntBASIC0.64□□□□□ -2.31
VPS28Q9UK41 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC0.64□□□□□ -2.31
VPS28Q9UK41 Z83818.1-201ENST00000603584 150 ntBASIC0.64□□□□□ -2.31
VPS28Q9UK41 AC020891.4-201ENST00000605745 93 ntBASIC0.64□□□□□ -2.31
VPS28Q9UK41 MIR342-201ENST00000362212 99 ntBASIC0.63□□□□□ -2.31
VPS28Q9UK41 Y_RNA.23-201ENST00000362496 106 ntBASIC0.63□□□□□ -2.31
VPS28Q9UK41 RNU6-103P-201ENST00000363686 107 ntBASIC0.63□□□□□ -2.31
VPS28Q9UK41 RNU1-133P-201ENST00000364867 167 ntBASIC0.63□□□□□ -2.31
VPS28Q9UK41 RNU4-45P-201ENST00000365469 141 ntBASIC0.63□□□□□ -2.31
VPS28Q9UK41 RNU6-945P-201ENST00000383947 107 ntBASIC0.63□□□□□ -2.31
VPS28Q9UK41 SNORA1-201ENST00000384107 130 ntBASIC0.63□□□□□ -2.31
VPS28Q9UK41 RNA5SP261-201ENST00000410536 106 ntBASIC0.63□□□□□ -2.31
VPS28Q9UK41 RNU6-733P-201ENST00000410759 104 ntBASIC0.63□□□□□ -2.31
VPS28Q9UK41 RNU6-177P-201ENST00000411257 104 ntBASIC0.63□□□□□ -2.31
VPS28Q9UK41 AC008737.2-201ENST00000599446 118 ntBASIC0.63□□□□□ -2.31
VPS28Q9UK41 AL442067.1-201ENST00000613261 223 ntBASIC0.63□□□□□ -2.31
VPS28Q9UK41 uc_338.6-201ENST00000613544 171 ntBASIC0.63□□□□□ -2.31
VPS28Q9UK41 MIR6515-201ENST00000619843 57 ntBASIC0.63□□□□□ -2.31
VPS28Q9UK41 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.63□□□□□ -2.31
VPS28Q9UK41 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC0.63□□□□□ -2.31
VPS28Q9UK41 Y_RNA.54-201ENST00000362766 105 ntBASIC0.62□□□□□ -2.31
VPS28Q9UK41 MIR938-201ENST00000401216 83 ntBASIC0.62□□□□□ -2.31
VPS28Q9UK41 RNU6-1190P-201ENST00000410811 104 ntBASIC0.62□□□□□ -2.31
VPS28Q9UK41 OMD-201ENST00000375550 2449 ntAPPRIS P1 TSL 1 (best) BASIC0.62□□□□□ -2.31
VPS28Q9UK41 Y_RNA.351-201ENST00000365436 96 ntBASIC0.61□□□□□ -2.31
VPS28Q9UK41 Y_RNA.396-201ENST00000383949 103 ntBASIC0.61□□□□□ -2.31
VPS28Q9UK41 MIR140-201ENST00000385282 100 ntBASIC0.61□□□□□ -2.31
VPS28Q9UK41 MIR1257-201ENST00000408490 117 ntBASIC0.61□□□□□ -2.31
VPS28Q9UK41 RNU7-80P-201ENST00000459562 61 ntBASIC0.61□□□□□ -2.31
VPS28Q9UK41 MIR3129-201ENST00000581095 76 ntBASIC0.61□□□□□ -2.31
VPS28Q9UK41 MIR5197-201ENST00000583721 112 ntBASIC0.61□□□□□ -2.31
VPS28Q9UK41 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC0.61□□□□□ -2.31
VPS28Q9UK41 Y_RNA.149-201ENST00000363558 117 ntBASIC0.6□□□□□ -2.31
VPS28Q9UK41 Y_RNA.454-201ENST00000384224 113 ntBASIC0.6□□□□□ -2.31
VPS28Q9UK41 RNU6-1237P-201ENST00000384777 107 ntBASIC0.6□□□□□ -2.31
VPS28Q9UK41 MT-TF-201ENST00000387314 71 ntBASIC0.6□□□□□ -2.31
VPS28Q9UK41 MIR548H3-201ENST00000408771 118 ntBASIC0.6□□□□□ -2.31
VPS28Q9UK41 RNU4-43P-201ENST00000410628 137 ntBASIC0.6□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 168.1 ms