Protein–RNA interactions for Protein: Q9H422

HIPK3, Homeodomain-interacting protein kinase 3, humanhuman

Predictions only

Length 1,215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIPK3Q9H422 SNORA75.5-201ENST00000391291 81 ntBASIC1.4□□□□□ -2.19
HIPK3Q9H422 RNU2-13P-201ENST00000515909 113 ntBASIC1.4□□□□□ -2.19
HIPK3Q9H422 SNORD111.1-201ENST00000516421 86 ntBASIC1.4□□□□□ -2.19
HIPK3Q9H422 RNU6-165P-201ENST00000517170 99 ntBASIC1.4□□□□□ -2.19
HIPK3Q9H422 MTND5P41-201ENST00000517498 206 ntBASIC1.4□□□□□ -2.19
HIPK3Q9H422 MIR5197-201ENST00000583721 112 ntBASIC1.4□□□□□ -2.19
HIPK3Q9H422 AL121890.5-201ENST00000620848 304 ntBASIC1.4□□□□□ -2.19
HIPK3Q9H422 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.4□□□□□ -2.19
HIPK3Q9H422 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC1.4□□□□□ -2.19
HIPK3Q9H422 RNU6-151P-201ENST00000364158 107 ntBASIC1.39□□□□□ -2.19
HIPK3Q9H422 RNU6-818P-201ENST00000364837 108 ntBASIC1.39□□□□□ -2.19
HIPK3Q9H422 Y_RNA.440-201ENST00000384120 114 ntBASIC1.39□□□□□ -2.19
HIPK3Q9H422 SNORA27-201ENST00000384323 126 ntBASIC1.39□□□□□ -2.19
HIPK3Q9H422 MIR570-201ENST00000384917 97 ntBASIC1.39□□□□□ -2.19
HIPK3Q9H422 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC1.39□□□□□ -2.19
HIPK3Q9H422 SNORD37.2-201ENST00000391075 66 ntBASIC1.39□□□□□ -2.19
HIPK3Q9H422 RNU6-588P-201ENST00000410281 105 ntBASIC1.39□□□□□ -2.19
HIPK3Q9H422 AC107297.1-201ENST00000459991 176 ntBASIC1.39□□□□□ -2.19
HIPK3Q9H422 RNU7-41P-201ENST00000515917 61 ntBASIC1.39□□□□□ -2.19
HIPK3Q9H422 RNU6-947P-201ENST00000516264 106 ntBASIC1.39□□□□□ -2.19
HIPK3Q9H422 RNU6-255P-201ENST00000516957 105 ntBASIC1.39□□□□□ -2.19
HIPK3Q9H422 AC090821.2-201ENST00000523552 176 ntBASIC1.39□□□□□ -2.19
HIPK3Q9H422 MIR3192-201ENST00000584920 77 ntBASIC1.39□□□□□ -2.19
HIPK3Q9H422 AL096861.1-201ENST00000610899 123 ntBASIC1.39□□□□□ -2.19
HIPK3Q9H422 Y_RNA.778-201ENST00000620203 90 ntBASIC1.39□□□□□ -2.19
HIPK3Q9H422 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.38□□□□□ -2.19
HIPK3Q9H422 Y_RNA.170-201ENST00000363746 110 ntBASIC1.38□□□□□ -2.19
HIPK3Q9H422 RNU4-11P-201ENST00000365287 132 ntBASIC1.38□□□□□ -2.19
HIPK3Q9H422 Y_RNA.354-201ENST00000365448 111 ntBASIC1.38□□□□□ -2.19
HIPK3Q9H422 Y_RNA.537-201ENST00000384626 109 ntBASIC1.38□□□□□ -2.19
HIPK3Q9H422 RNU6-1067P-201ENST00000384752 107 ntBASIC1.38□□□□□ -2.19
HIPK3Q9H422 RNA5SP61-201ENST00000516453 100 ntBASIC1.38□□□□□ -2.19
HIPK3Q9H422 IGHVIII-67-2-201ENST00000519849 88 ntBASIC1.38□□□□□ -2.19
HIPK3Q9H422 AC008133.2-201ENST00000624540 351 ntBASIC1.38□□□□□ -2.19
HIPK3Q9H422 MTND1P7-201ENST00000632801 297 ntBASIC1.38□□□□□ -2.19
HIPK3Q9H422 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC1.37□□□□□ -2.19
HIPK3Q9H422 RNU6-1062P-201ENST00000383908 107 ntBASIC1.37□□□□□ -2.19
HIPK3Q9H422 RNU6-1223P-201ENST00000517124 104 ntBASIC1.37□□□□□ -2.19
HIPK3Q9H422 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC1.37□□□□□ -2.19
HIPK3Q9H422 MIR4791-201ENST00000607666 84 ntBASIC1.37□□□□□ -2.19
HIPK3Q9H422 AC243994.1-201ENST00000618627 109 ntBASIC1.37□□□□□ -2.19
HIPK3Q9H422 SNORA24-201ENST00000384096 131 ntBASIC1.36□□□□□ -2.19
HIPK3Q9H422 RPL39P39-201ENST00000455840 151 ntBASIC1.36□□□□□ -2.19
HIPK3Q9H422 RPS29P24-201ENST00000486345 171 ntBASIC1.36□□□□□ -2.19
HIPK3Q9H422 RNU7-200P-201ENST00000516105 62 ntBASIC1.36□□□□□ -2.19
HIPK3Q9H422 RN7SKP88-201ENST00000516847 250 ntBASIC1.36□□□□□ -2.19
HIPK3Q9H422 AC112693.2-201ENST00000556538 232 ntBASIC1.36□□□□□ -2.19
HIPK3Q9H422 CYP3A52P-201ENST00000563326 91 ntBASIC1.36□□□□□ -2.19
HIPK3Q9H422 MIR151B-201ENST00000584249 96 ntBASIC1.36□□□□□ -2.19
HIPK3Q9H422 AC131055.1-201ENST00000584626 316 ntBASIC1.36□□□□□ -2.19
HIPK3Q9H422 7SK.8-201ENST00000612110 250 ntBASIC1.36□□□□□ -2.19
HIPK3Q9H422 7SK.11-201ENST00000615477 250 ntBASIC1.36□□□□□ -2.19
HIPK3Q9H422 MIR6788-201ENST00000618842 66 ntBASIC1.36□□□□□ -2.19
HIPK3Q9H422 7SK.13-201ENST00000622040 250 ntBASIC1.36□□□□□ -2.19
HIPK3Q9H422 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC1.36□□□□□ -2.19
HIPK3Q9H422 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC1.35□□□□□ -2.19
HIPK3Q9H422 SNORD114-26-201ENST00000363543 72 ntBASIC1.35□□□□□ -2.19
HIPK3Q9H422 RNY1P11-201ENST00000363759 113 ntBASIC1.35□□□□□ -2.19
HIPK3Q9H422 Y_RNA.400-201ENST00000383963 111 ntBASIC1.35□□□□□ -2.19
HIPK3Q9H422 SNORA51.10-201ENST00000384418 136 ntBASIC1.35□□□□□ -2.19
HIPK3Q9H422 Y_RNA.497-201ENST00000384447 98 ntBASIC1.35□□□□□ -2.19
HIPK3Q9H422 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC1.35□□□□□ -2.19
HIPK3Q9H422 RPS29P29-201ENST00000456396 171 ntBASIC1.35□□□□□ -2.19
HIPK3Q9H422 snoU13.25-201ENST00000458945 104 ntBASIC1.35□□□□□ -2.19
HIPK3Q9H422 SCARNA15-202ENST00000516881 127 ntBASIC1.35□□□□□ -2.19
HIPK3Q9H422 PVT1_3.1-201ENST00000620853 95 ntBASIC1.35□□□□□ -2.19
HIPK3Q9H422 MIR4251-201ENST00000635819 61 ntBASIC1.35□□□□□ -2.19
HIPK3Q9H422 MIR6767-201ENST00000637302 66 ntBASIC1.35□□□□□ -2.19
HIPK3Q9H422 Y_RNA.52-201ENST00000362760 96 ntBASIC1.34□□□□□ -2.19
HIPK3Q9H422 Y_RNA.351-201ENST00000365436 96 ntBASIC1.34□□□□□ -2.19
HIPK3Q9H422 SNORA70.7-201ENST00000384159 133 ntBASIC1.34□□□□□ -2.19
HIPK3Q9H422 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC1.34□□□□□ -2.19
HIPK3Q9H422 RNU7-67P-201ENST00000459003 62 ntBASIC1.34□□□□□ -2.19
HIPK3Q9H422 RNU7-96P-201ENST00000459535 64 ntBASIC1.34□□□□□ -2.19
HIPK3Q9H422 RNU6-1149P-201ENST00000516810 97 ntBASIC1.34□□□□□ -2.19
HIPK3Q9H422 RNU6-958P-201ENST00000516995 106 ntBASIC1.34□□□□□ -2.19
HIPK3Q9H422 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC1.34□□□□□ -2.2
HIPK3Q9H422 MTND5P32-201ENST00000560711 1802 ntBASIC1.33□□□□□ -2.2
HIPK3Q9H422 MIR26B-201ENST00000362251 77 ntBASIC1.33□□□□□ -2.2
HIPK3Q9H422 Y_RNA.215-201ENST00000364204 112 ntBASIC1.33□□□□□ -2.2
HIPK3Q9H422 Y_RNA.251-201ENST00000364551 99 ntBASIC1.33□□□□□ -2.2
HIPK3Q9H422 Y_RNA.506-201ENST00000384494 102 ntBASIC1.33□□□□□ -2.2
HIPK3Q9H422 MIR222-201ENST00000384992 110 ntBASIC1.33□□□□□ -2.2
HIPK3Q9H422 MIR548J-201ENST00000408833 112 ntBASIC1.33□□□□□ -2.2
HIPK3Q9H422 AL035398.1-201ENST00000430869 322 ntBASIC1.33□□□□□ -2.2
HIPK3Q9H422 RNU7-197P-201ENST00000458836 62 ntBASIC1.33□□□□□ -2.2
HIPK3Q9H422 AL133373.1-201ENST00000497098 94 ntBASIC1.33□□□□□ -2.2
HIPK3Q9H422 RNU6-998P-201ENST00000515894 101 ntBASIC1.33□□□□□ -2.2
HIPK3Q9H422 RNA5SP48-201ENST00000363969 126 ntBASIC1.32□□□□□ -2.2
HIPK3Q9H422 RNY1P5-201ENST00000383890 115 ntBASIC1.32□□□□□ -2.2
HIPK3Q9H422 SNORD26-201ENST00000384147 75 ntBASIC1.32□□□□□ -2.2
HIPK3Q9H422 RNU6-939P-201ENST00000384634 107 ntBASIC1.32□□□□□ -2.2
HIPK3Q9H422 MIR758-201ENST00000390227 88 ntBASIC1.32□□□□□ -2.2
HIPK3Q9H422 Y_RNA.584-201ENST00000391090 114 ntBASIC1.32□□□□□ -2.2
HIPK3Q9H422 MIR513C-201ENST00000401352 84 ntBASIC1.32□□□□□ -2.2
HIPK3Q9H422 RNU6ATAC20P-201ENST00000408436 127 ntBASIC1.32□□□□□ -2.2
HIPK3Q9H422 RNU6-1054P-201ENST00000411293 104 ntBASIC1.32□□□□□ -2.2
HIPK3Q9H422 RNU7-80P-201ENST00000459562 61 ntBASIC1.32□□□□□ -2.2
HIPK3Q9H422 MIR548X2-201ENST00000579776 100 ntBASIC1.32□□□□□ -2.2
HIPK3Q9H422 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC1.32□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 225.6 ms