Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 Y_RNA.644-201ENST00000459006 113 ntBASIC0.75□□□□□ -2.29
ZNF540Q8NDQ6 RNU6-1299P-201ENST00000516316 100 ntBASIC0.75□□□□□ -2.29
ZNF540Q8NDQ6 Y_RNA.674-201ENST00000516362 113 ntBASIC0.75□□□□□ -2.29
ZNF540Q8NDQ6 MRPS18CP4-201ENST00000535821 231 ntBASIC0.75□□□□□ -2.29
ZNF540Q8NDQ6 CYP3A137P-201ENST00000562436 69 ntBASIC0.75□□□□□ -2.29
ZNF540Q8NDQ6 Z83818.1-201ENST00000603584 150 ntBASIC0.75□□□□□ -2.29
ZNF540Q8NDQ6 MIR373-201ENST00000362273 69 ntBASIC0.74□□□□□ -2.29
ZNF540Q8NDQ6 Y_RNA.37-201ENST00000362606 108 ntBASIC0.74□□□□□ -2.29
ZNF540Q8NDQ6 RNY1P11-201ENST00000363759 113 ntBASIC0.74□□□□□ -2.29
ZNF540Q8NDQ6 Y_RNA.182-201ENST00000363880 111 ntBASIC0.74□□□□□ -2.29
ZNF540Q8NDQ6 Y_RNA.233-201ENST00000364407 101 ntBASIC0.74□□□□□ -2.29
ZNF540Q8NDQ6 Y_RNA.552-201ENST00000384665 112 ntBASIC0.74□□□□□ -2.29
ZNF540Q8NDQ6 MIR598-201ENST00000384868 97 ntBASIC0.74□□□□□ -2.29
ZNF540Q8NDQ6 SNORA75.2-201ENST00000391138 150 ntBASIC0.74□□□□□ -2.29
ZNF540Q8NDQ6 SNORA75.3-201ENST00000391231 150 ntBASIC0.74□□□□□ -2.29
ZNF540Q8NDQ6 PCNPP3-201ENST00000393579 471 ntBASIC0.74□□□□□ -2.29
ZNF540Q8NDQ6 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC0.74□□□□□ -2.29
ZNF540Q8NDQ6 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC0.74□□□□□ -2.29
ZNF540Q8NDQ6 AC004941.2-201ENST00000427009 228 ntBASIC0.74□□□□□ -2.29
ZNF540Q8NDQ6 AL392103.1-201ENST00000447000 198 ntBASIC0.74□□□□□ -2.29
ZNF540Q8NDQ6 RNU6-693P-201ENST00000516134 107 ntBASIC0.74□□□□□ -2.29
ZNF540Q8NDQ6 SNORA18.4-201ENST00000516440 124 ntBASIC0.74□□□□□ -2.29
ZNF540Q8NDQ6 RNU7-43P-201ENST00000516554 64 ntBASIC0.74□□□□□ -2.29
ZNF540Q8NDQ6 RNU6-365P-201ENST00000517113 106 ntBASIC0.74□□□□□ -2.29
ZNF540Q8NDQ6 AL365205.2-201ENST00000594586 68 ntBASIC0.74□□□□□ -2.29
ZNF540Q8NDQ6 FAM71BP1-201ENST00000604431 523 ntBASIC0.74□□□□□ -2.29
ZNF540Q8NDQ6 AC106800.4-201ENST00000614905 153 ntBASIC0.74□□□□□ -2.29
ZNF540Q8NDQ6 AC008133.2-201ENST00000624540 351 ntBASIC0.74□□□□□ -2.29
ZNF540Q8NDQ6 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC0.74□□□□□ -2.29
ZNF540Q8NDQ6 RNU6-1020P-201ENST00000363684 107 ntBASIC0.73□□□□□ -2.29
ZNF540Q8NDQ6 SNORD115-28-201ENST00000363931 81 ntBASIC0.73□□□□□ -2.29
ZNF540Q8NDQ6 RNU6-728P-201ENST00000365375 104 ntBASIC0.73□□□□□ -2.29
ZNF540Q8NDQ6 RNU6-1318P-201ENST00000365389 103 ntBASIC0.73□□□□□ -2.29
ZNF540Q8NDQ6 RNU6-1336P-201ENST00000383886 109 ntBASIC0.73□□□□□ -2.29
ZNF540Q8NDQ6 RNU6-643P-201ENST00000384018 107 ntBASIC0.73□□□□□ -2.29
ZNF540Q8NDQ6 Y_RNA.785-201ENST00000384290 109 ntBASIC0.73□□□□□ -2.29
ZNF540Q8NDQ6 MIR520C-201ENST00000385005 87 ntBASIC0.73□□□□□ -2.29
ZNF540Q8NDQ6 RNU7-120P-201ENST00000459334 63 ntBASIC0.73□□□□□ -2.29
ZNF540Q8NDQ6 AC074198.2-201ENST00000508153 258 ntBASIC0.73□□□□□ -2.29
ZNF540Q8NDQ6 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC0.73□□□□□ -2.29
ZNF540Q8NDQ6 AL353765.1-201ENST00000605514 183 ntBASIC0.73□□□□□ -2.29
ZNF540Q8NDQ6 MIR4791-201ENST00000607666 84 ntBASIC0.73□□□□□ -2.29
ZNF540Q8NDQ6 SNORA25.3-201ENST00000363205 127 ntBASIC0.72□□□□□ -2.29
ZNF540Q8NDQ6 Y_RNA.240-201ENST00000364469 95 ntBASIC0.72□□□□□ -2.29
ZNF540Q8NDQ6 Y_RNA.440-201ENST00000384120 114 ntBASIC0.72□□□□□ -2.29
ZNF540Q8NDQ6 RNU4-70P-201ENST00000384579 139 ntBASIC0.72□□□□□ -2.29
ZNF540Q8NDQ6 MIR802-201ENST00000390235 94 ntBASIC0.72□□□□□ -2.29
ZNF540Q8NDQ6 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC0.72□□□□□ -2.29
ZNF540Q8NDQ6 RNU2-70P-201ENST00000410718 179 ntBASIC0.72□□□□□ -2.29
ZNF540Q8NDQ6 AC090844.1-201ENST00000422019 156 ntBASIC0.72□□□□□ -2.29
ZNF540Q8NDQ6 AL121914.1-201ENST00000450188 156 ntBASIC0.72□□□□□ -2.29
ZNF540Q8NDQ6 AC023449.1-201ENST00000454464 154 ntBASIC0.72□□□□□ -2.29
ZNF540Q8NDQ6 Y_RNA.797-201ENST00000515977 94 ntBASIC0.72□□□□□ -2.29
ZNF540Q8NDQ6 RNU6-504P-201ENST00000516568 104 ntBASIC0.72□□□□□ -2.29
ZNF540Q8NDQ6 RNU6-861P-201ENST00000516745 106 ntBASIC0.72□□□□□ -2.29
ZNF540Q8NDQ6 AC107958.3-201ENST00000553410 431 ntTSL 3 BASIC0.72□□□□□ -2.29
ZNF540Q8NDQ6 MIR3973-201ENST00000579824 107 ntBASIC0.72□□□□□ -2.29
ZNF540Q8NDQ6 MIR548AO-201ENST00000579992 96 ntBASIC0.72□□□□□ -2.29
ZNF540Q8NDQ6 AC025627.3-201ENST00000582078 182 ntBASIC0.72□□□□□ -2.29
ZNF540Q8NDQ6 AC090425.1-201ENST00000610007 140 ntBASIC0.72□□□□□ -2.29
ZNF540Q8NDQ6 MTND1P7-201ENST00000632801 297 ntBASIC0.72□□□□□ -2.29
ZNF540Q8NDQ6 SNORD115-34-201ENST00000362441 82 ntBASIC0.71□□□□□ -2.3
ZNF540Q8NDQ6 SNORD115-12-201ENST00000362583 82 ntBASIC0.71□□□□□ -2.3
ZNF540Q8NDQ6 SNORD115-29-201ENST00000362834 82 ntBASIC0.71□□□□□ -2.3
ZNF540Q8NDQ6 SNORD115-9-201ENST00000362912 82 ntBASIC0.71□□□□□ -2.3
ZNF540Q8NDQ6 SNORD115-21-201ENST00000362963 81 ntBASIC0.71□□□□□ -2.3
ZNF540Q8NDQ6 SNORD115-14-201ENST00000363090 81 ntBASIC0.71□□□□□ -2.3
ZNF540Q8NDQ6 RNA5SP264-201ENST00000363115 107 ntBASIC0.71□□□□□ -2.3
ZNF540Q8NDQ6 SNORD115-13-201ENST00000363358 82 ntBASIC0.71□□□□□ -2.3
ZNF540Q8NDQ6 SNORD115-41-201ENST00000363608 82 ntBASIC0.71□□□□□ -2.3
ZNF540Q8NDQ6 SNORD115-11-201ENST00000363616 82 ntBASIC0.71□□□□□ -2.3
ZNF540Q8NDQ6 SNORD115-5-201ENST00000363633 82 ntBASIC0.71□□□□□ -2.3
ZNF540Q8NDQ6 SNORD115-39-201ENST00000363694 82 ntBASIC0.71□□□□□ -2.3
ZNF540Q8NDQ6 SNORD115-4-201ENST00000363810 82 ntBASIC0.71□□□□□ -2.3
ZNF540Q8NDQ6 SNORD115-16-201ENST00000363887 82 ntBASIC0.71□□□□□ -2.3
ZNF540Q8NDQ6 SNORD115-6-201ENST00000363942 82 ntBASIC0.71□□□□□ -2.3
ZNF540Q8NDQ6 SNORD115-42-201ENST00000364273 82 ntBASIC0.71□□□□□ -2.3
ZNF540Q8NDQ6 Y_RNA.242-201ENST00000364473 110 ntBASIC0.71□□□□□ -2.3
ZNF540Q8NDQ6 SNORD115-15-201ENST00000364809 81 ntBASIC0.71□□□□□ -2.3
ZNF540Q8NDQ6 SNORD115-1-201ENST00000364961 82 ntBASIC0.71□□□□□ -2.3
ZNF540Q8NDQ6 SNORD115-26-201ENST00000365067 82 ntBASIC0.71□□□□□ -2.3
ZNF540Q8NDQ6 SNORD115-10-201ENST00000365073 81 ntBASIC0.71□□□□□ -2.3
ZNF540Q8NDQ6 SNORD115-43-201ENST00000365503 82 ntBASIC0.71□□□□□ -2.3
ZNF540Q8NDQ6 SNORD115-36-201ENST00000365629 82 ntBASIC0.71□□□□□ -2.3
ZNF540Q8NDQ6 Y_RNA.515-201ENST00000384535 112 ntBASIC0.71□□□□□ -2.3
ZNF540Q8NDQ6 RNU6-913P-201ENST00000390913 95 ntBASIC0.71□□□□□ -2.3
ZNF540Q8NDQ6 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC0.71□□□□□ -2.3
ZNF540Q8NDQ6 SEPT7P4-201ENST00000437076 306 ntBASIC0.71□□□□□ -2.3
ZNF540Q8NDQ6 Y_RNA.700-201ENST00000516806 100 ntBASIC0.71□□□□□ -2.3
ZNF540Q8NDQ6 SCARNA15-202ENST00000516881 127 ntBASIC0.71□□□□□ -2.3
ZNF540Q8NDQ6 RNU6-794P-201ENST00000517261 64 ntBASIC0.71□□□□□ -2.3
ZNF540Q8NDQ6 SNORA81.3-201ENST00000517283 198 ntBASIC0.71□□□□□ -2.3
ZNF540Q8NDQ6 AP003484.1-201ENST00000530974 250 ntBASIC0.71□□□□□ -2.3
ZNF540Q8NDQ6 AP002392.1-201ENST00000537692 208 ntBASIC0.71□□□□□ -2.3
ZNF540Q8NDQ6 MIR4698-201ENST00000577795 80 ntBASIC0.71□□□□□ -2.3
ZNF540Q8NDQ6 MIR4431-201ENST00000579990 94 ntBASIC0.71□□□□□ -2.3
ZNF540Q8NDQ6 MIR378D2-201ENST00000580636 98 ntBASIC0.71□□□□□ -2.3
ZNF540Q8NDQ6 MIR3129-201ENST00000581095 76 ntBASIC0.71□□□□□ -2.3
ZNF540Q8NDQ6 MIR5197-201ENST00000583721 112 ntBASIC0.71□□□□□ -2.3
ZNF540Q8NDQ6 AC072026.1-201ENST00000605023 201 ntBASIC0.71□□□□□ -2.3
Retrieved 100 of 98,524 protein–RNA pairs in 107.7 ms