Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 RNU7-161P-201ENST00000517289 62 ntBASIC-0.62□□□□□ -2.51
CCDC88AQ3V6T2 Y_RNA.41-201ENST00000362646 102 ntBASIC-0.63□□□□□ -2.51
CCDC88AQ3V6T2 Y_RNA.65-201ENST00000362846 100 ntBASIC-0.63□□□□□ -2.51
CCDC88AQ3V6T2 MIR516B1-201ENST00000385211 90 ntBASIC-0.63□□□□□ -2.51
CCDC88AQ3V6T2 Y_RNA.666-201ENST00000516187 112 ntBASIC-0.63□□□□□ -2.51
CCDC88AQ3V6T2 RNU6-1232P-201ENST00000516299 86 ntBASIC-0.63□□□□□ -2.51
CCDC88AQ3V6T2 MIR4662B-201ENST00000579498 81 ntBASIC-0.63□□□□□ -2.51
CCDC88AQ3V6T2 MIR4760-201ENST00000585040 80 ntBASIC-0.63□□□□□ -2.51
CCDC88AQ3V6T2 AC005014.2-201ENST00000607795 599 ntBASIC-0.63□□□□□ -2.51
CCDC88AQ3V6T2 U7.6-201ENST00000610841 64 ntBASIC-0.63□□□□□ -2.51
CCDC88AQ3V6T2 AC007485.1-201ENST00000616755 206 ntBASIC-0.63□□□□□ -2.51
CCDC88AQ3V6T2 Y_RNA.351-201ENST00000365436 96 ntBASIC-0.63□□□□□ -2.51
CCDC88AQ3V6T2 AL356055.1-201ENST00000602528 446 ntBASIC-0.63□□□□□ -2.51
CCDC88AQ3V6T2 MIR302B-201ENST00000362188 73 ntBASIC-0.64□□□□□ -2.51
CCDC88AQ3V6T2 MIR101-2-201ENST00000362195 79 ntBASIC-0.64□□□□□ -2.51
CCDC88AQ3V6T2 RNU6-653P-201ENST00000363074 106 ntBASIC-0.64□□□□□ -2.51
CCDC88AQ3V6T2 RNY4P14-201ENST00000363656 96 ntBASIC-0.64□□□□□ -2.51
CCDC88AQ3V6T2 RNU6-811P-201ENST00000384069 107 ntBASIC-0.64□□□□□ -2.51
CCDC88AQ3V6T2 MIR588-201ENST00000384900 83 ntBASIC-0.64□□□□□ -2.51
CCDC88AQ3V6T2 SNORD41.1-201ENST00000391000 69 ntBASIC-0.64□□□□□ -2.51
CCDC88AQ3V6T2 RNA5SP237-201ENST00000410414 113 ntBASIC-0.64□□□□□ -2.51
CCDC88AQ3V6T2 RNU6-1086P-201ENST00000410930 100 ntBASIC-0.64□□□□□ -2.51
CCDC88AQ3V6T2 RNU2-14P-201ENST00000411053 191 ntBASIC-0.64□□□□□ -2.51
CCDC88AQ3V6T2 AC055872.1-201ENST00000570978 278 ntBASIC-0.64□□□□□ -2.51
CCDC88AQ3V6T2 RNU6-484P-201ENST00000384016 107 ntBASIC-0.65□□□□□ -2.51
CCDC88AQ3V6T2 RNU4-83P-201ENST00000410863 133 ntBASIC-0.65□□□□□ -2.51
CCDC88AQ3V6T2 AC009161.1-201ENST00000417306 376 ntBASIC-0.65□□□□□ -2.51
CCDC88AQ3V6T2 RNU7-96P-201ENST00000459535 64 ntBASIC-0.65□□□□□ -2.51
CCDC88AQ3V6T2 AC048344.4-201ENST00000619744 527 ntBASIC-0.65□□□□□ -2.51
CCDC88AQ3V6T2 SNORD81.1-201ENST00000363064 77 ntBASIC-0.65□□□□□ -2.51
CCDC88AQ3V6T2 RNU6-449P-201ENST00000383914 107 ntBASIC-0.65□□□□□ -2.51
CCDC88AQ3V6T2 MIR548L-201ENST00000408303 86 ntBASIC-0.65□□□□□ -2.51
CCDC88AQ3V6T2 RNU6-938P-201ENST00000411285 103 ntBASIC-0.65□□□□□ -2.51
CCDC88AQ3V6T2 SNX3P1X-201ENST00000414887 175 ntBASIC-0.65□□□□□ -2.51
CCDC88AQ3V6T2 RN7SKP295-201ENST00000517264 153 ntBASIC-0.65□□□□□ -2.51
CCDC88AQ3V6T2 EFCAB5-213ENST00000638539 168 ntTSL 5 BASIC-0.65□□□□□ -2.51
CCDC88AQ3V6T2 Y_RNA.13-201ENST00000362403 112 ntBASIC-0.66□□□□□ -2.52
CCDC88AQ3V6T2 RNU6-899P-201ENST00000363947 107 ntBASIC-0.66□□□□□ -2.52
CCDC88AQ3V6T2 Y_RNA.203-201ENST00000364106 102 ntBASIC-0.66□□□□□ -2.52
CCDC88AQ3V6T2 RNU6-1229P-201ENST00000364295 107 ntBASIC-0.66□□□□□ -2.52
CCDC88AQ3V6T2 SNORD12C-201ENST00000386307 89 ntBASIC-0.66□□□□□ -2.52
CCDC88AQ3V6T2 RNU6-1148P-201ENST00000410992 104 ntBASIC-0.66□□□□□ -2.52
CCDC88AQ3V6T2 MTND5P5-201ENST00000503764 376 ntBASIC-0.66□□□□□ -2.52
CCDC88AQ3V6T2 MIR4790-201ENST00000577799 79 ntBASIC-0.66□□□□□ -2.52
CCDC88AQ3V6T2 AL133255.1-201ENST00000606374 441 ntBASIC-0.66□□□□□ -2.52
CCDC88AQ3V6T2 MIR198-201ENST00000637333 62 ntBASIC-0.66□□□□□ -2.52
CCDC88AQ3V6T2 RNU6-926P-201ENST00000384075 107 ntBASIC-0.67□□□□□ -2.52
CCDC88AQ3V6T2 AC063944.3-201ENST00000609969 533 ntBASIC-0.67□□□□□ -2.52
CCDC88AQ3V6T2 uc_338.10-201ENST00000621872 182 ntBASIC-0.67□□□□□ -2.52
CCDC88AQ3V6T2 Y_RNA.194-201ENST00000363985 102 ntBASIC-0.67□□□□□ -2.52
CCDC88AQ3V6T2 RNY1P13-201ENST00000365030 105 ntBASIC-0.67□□□□□ -2.52
CCDC88AQ3V6T2 RNU6-1336P-201ENST00000383886 109 ntBASIC-0.67□□□□□ -2.52
CCDC88AQ3V6T2 RNU4-30P-201ENST00000410245 143 ntBASIC-0.67□□□□□ -2.52
CCDC88AQ3V6T2 AC069023.1-201ENST00000442231 221 ntTSL 3 BASIC-0.67□□□□□ -2.52
CCDC88AQ3V6T2 SNORD77.4-201ENST00000516158 81 ntBASIC-0.67□□□□□ -2.52
CCDC88AQ3V6T2 RNU7-53P-201ENST00000516705 60 ntBASIC-0.67□□□□□ -2.52
CCDC88AQ3V6T2 AP001328.1-201ENST00000528550 176 ntBASIC-0.67□□□□□ -2.52
CCDC88AQ3V6T2 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC-0.67□□□□□ -2.52
CCDC88AQ3V6T2 LUZP6-201ENST00000589735 177 ntAPPRIS P1 BASIC-0.67□□□□□ -2.52
CCDC88AQ3V6T2 RNU6-10P-201ENST00000384036 107 ntBASIC-0.68□□□□□ -2.52
CCDC88AQ3V6T2 AC244505.6-201ENST00000452829 130 ntBASIC-0.68□□□□□ -2.52
CCDC88AQ3V6T2 RNU6-893P-201ENST00000458841 100 ntBASIC-0.68□□□□□ -2.52
CCDC88AQ3V6T2 SCARNA21.1-201ENST00000515996 128 ntBASIC-0.68□□□□□ -2.52
CCDC88AQ3V6T2 MIR4659A-201ENST00000580269 81 ntBASIC-0.68□□□□□ -2.52
CCDC88AQ3V6T2 MIR3611-201ENST00000584484 83 ntBASIC-0.68□□□□□ -2.52
CCDC88AQ3V6T2 AC011373.1-201ENST00000607270 237 ntBASIC-0.68□□□□□ -2.52
CCDC88AQ3V6T2 AL442067.1-201ENST00000613261 223 ntBASIC-0.68□□□□□ -2.52
CCDC88AQ3V6T2 Y_RNA.49-201ENST00000362714 112 ntBASIC-0.69□□□□□ -2.52
CCDC88AQ3V6T2 SNORD114-14-201ENST00000362723 75 ntBASIC-0.69□□□□□ -2.52
CCDC88AQ3V6T2 RNU6-1189P-201ENST00000383958 107 ntBASIC-0.69□□□□□ -2.52
CCDC88AQ3V6T2 Y_RNA.416-201ENST00000384014 113 ntBASIC-0.69□□□□□ -2.52
CCDC88AQ3V6T2 SNORD116-1-201ENST00000384335 95 ntBASIC-0.69□□□□□ -2.52
CCDC88AQ3V6T2 Y_RNA.482-201ENST00000384377 111 ntBASIC-0.69□□□□□ -2.52
CCDC88AQ3V6T2 SNORD110-201ENST00000408189 75 ntBASIC-0.69□□□□□ -2.52
CCDC88AQ3V6T2 MTND3P8-201ENST00000412909 339 ntBASIC-0.69□□□□□ -2.52
CCDC88AQ3V6T2 AJ239322.2-201ENST00000421696 575 ntTSL 5 BASIC-0.69□□□□□ -2.52
CCDC88AQ3V6T2 AC107399.1-201ENST00000451226 265 ntBASIC-0.69□□□□□ -2.52
CCDC88AQ3V6T2 Y_RNA.704-201ENST00000516851 102 ntBASIC-0.69□□□□□ -2.52
CCDC88AQ3V6T2 RNU6-264P-201ENST00000517134 104 ntBASIC-0.69□□□□□ -2.52
CCDC88AQ3V6T2 AP005530.1-201ENST00000572608 567 ntTSL 3 BASIC-0.69□□□□□ -2.52
CCDC88AQ3V6T2 MIR4724-201ENST00000579485 89 ntBASIC-0.69□□□□□ -2.52
CCDC88AQ3V6T2 MIR6514-201ENST00000622549 70 ntBASIC-0.69□□□□□ -2.52
CCDC88AQ3V6T2 Y_RNA.9-201ENST00000362354 101 ntBASIC-0.69□□□□□ -2.52
CCDC88AQ3V6T2 Y_RNA.391-201ENST00000383933 94 ntBASIC-0.69□□□□□ -2.52
CCDC88AQ3V6T2 Y_RNA.468-201ENST00000384298 102 ntBASIC-0.69□□□□□ -2.52
CCDC88AQ3V6T2 MIR548K-201ENST00000408406 116 ntBASIC-0.69□□□□□ -2.52
CCDC88AQ3V6T2 RNU6-764P-201ENST00000516396 105 ntBASIC-0.69□□□□□ -2.52
CCDC88AQ3V6T2 Y_RNA.713-201ENST00000517013 96 ntBASIC-0.69□□□□□ -2.52
CCDC88AQ3V6T2 VN1R91P-201ENST00000594377 169 ntBASIC-0.69□□□□□ -2.52
CCDC88AQ3V6T2 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC-0.69□□□□□ -2.52
CCDC88AQ3V6T2 MIR6717-201ENST00000622747 73 ntBASIC-0.69□□□□□ -2.52
CCDC88AQ3V6T2 AC112487.2-201ENST00000637950 304 ntBASIC-0.69□□□□□ -2.52
CCDC88AQ3V6T2 Y_RNA.436-201ENST00000384097 102 ntBASIC-0.7□□□□□ -2.52
CCDC88AQ3V6T2 MIR876-201ENST00000401147 81 ntBASIC-0.7□□□□□ -2.52
CCDC88AQ3V6T2 Y_RNA.717-201ENST00000517106 92 ntBASIC-0.7□□□□□ -2.52
CCDC88AQ3V6T2 RNU7-35P-201ENST00000517174 62 ntBASIC-0.7□□□□□ -2.52
CCDC88AQ3V6T2 SNORA70.25-201ENST00000612741 95 ntBASIC-0.7□□□□□ -2.52
CCDC88AQ3V6T2 MIR8066-201ENST00000617280 78 ntBASIC-0.7□□□□□ -2.52
CCDC88AQ3V6T2 U6.92-201ENST00000636464 89 ntBASIC-0.7□□□□□ -2.52
CCDC88AQ3V6T2 MIR342-201ENST00000362212 99 ntBASIC-0.71□□□□□ -2.52
Retrieved 100 of 98,524 protein–RNA pairs in 272.9 ms