Protein–RNA interactions for Protein: Q15475

SIX1, Homeobox protein SIX1, humanhuman

Predicted RBP Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX1Q15475 RNU6ATAC23P-201ENST00000408448 123 ntBASIC0.88□□□□□ -2.27
SIX1Q15475 AC002429.1-201ENST00000437672 148 ntBASIC0.88□□□□□ -2.27
SIX1Q15475 RNU7-40P-201ENST00000516397 64 ntBASIC0.88□□□□□ -2.27
SIX1Q15475 MIR548AO-201ENST00000579992 96 ntBASIC0.88□□□□□ -2.27
SIX1Q15475 MIR6857-201ENST00000613267 93 ntBASIC0.88□□□□□ -2.27
SIX1Q15475 RMST_2.1-201ENST00000617263 136 ntBASIC0.88□□□□□ -2.27
SIX1Q15475 UGP2-230ENST00000626380 276 ntTSL 5 BASIC0.88□□□□□ -2.27
SIX1Q15475 MIR6767-201ENST00000637302 66 ntBASIC0.88□□□□□ -2.27
SIX1Q15475 RNU6-978P-201ENST00000364371 103 ntBASIC0.87□□□□□ -2.27
SIX1Q15475 RNU6-1189P-201ENST00000383958 107 ntBASIC0.87□□□□□ -2.27
SIX1Q15475 RNU6-643P-201ENST00000384018 107 ntBASIC0.87□□□□□ -2.27
SIX1Q15475 Y_RNA.552-201ENST00000384665 112 ntBASIC0.87□□□□□ -2.27
SIX1Q15475 SNORD77.3-201ENST00000391113 65 ntBASIC0.87□□□□□ -2.27
SIX1Q15475 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.87□□□□□ -2.27
SIX1Q15475 RNU7-90P-201ENST00000459216 62 ntBASIC0.87□□□□□ -2.27
SIX1Q15475 RPS29P24-201ENST00000486345 171 ntBASIC0.87□□□□□ -2.27
SIX1Q15475 RNU6-351P-201ENST00000516097 100 ntBASIC0.87□□□□□ -2.27
SIX1Q15475 RNU6-388P-201ENST00000517012 105 ntBASIC0.87□□□□□ -2.27
SIX1Q15475 RNU6-389P-201ENST00000517048 105 ntBASIC0.87□□□□□ -2.27
SIX1Q15475 MIR378D2-201ENST00000580636 98 ntBASIC0.87□□□□□ -2.27
SIX1Q15475 MIR151B-201ENST00000584249 96 ntBASIC0.87□□□□□ -2.27
SIX1Q15475 AL365205.2-201ENST00000594586 68 ntBASIC0.87□□□□□ -2.27
SIX1Q15475 AC211469.2-201ENST00000605461 205 ntBASIC0.87□□□□□ -2.27
SIX1Q15475 MIR6788-201ENST00000618842 66 ntBASIC0.87□□□□□ -2.27
SIX1Q15475 U6.106-201ENST00000636360 105 ntBASIC0.87□□□□□ -2.27
SIX1Q15475 AC008163.1-202ENST00000636004 2889 ntBASIC0.86□□□□□ -2.27
SIX1Q15475 SNORD114-2-201ENST00000363953 78 ntBASIC0.86□□□□□ -2.27
SIX1Q15475 Y_RNA.440-201ENST00000384120 114 ntBASIC0.86□□□□□ -2.27
SIX1Q15475 MIR489-201ENST00000384923 84 ntBASIC0.86□□□□□ -2.27
SIX1Q15475 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC0.86□□□□□ -2.27
SIX1Q15475 RNU7-73P-201ENST00000458743 63 ntBASIC0.86□□□□□ -2.27
SIX1Q15475 RNU7-67P-201ENST00000459003 62 ntBASIC0.86□□□□□ -2.27
SIX1Q15475 snoU13.16-201ENST00000459350 104 ntBASIC0.86□□□□□ -2.27
SIX1Q15475 SNORD116-25-201ENST00000516517 92 ntBASIC0.86□□□□□ -2.27
SIX1Q15475 RNU6-1223P-201ENST00000517124 104 ntBASIC0.86□□□□□ -2.27
SIX1Q15475 MRPS18CP4-201ENST00000535821 231 ntBASIC0.86□□□□□ -2.27
SIX1Q15475 MIR3973-201ENST00000579824 107 ntBASIC0.86□□□□□ -2.27
SIX1Q15475 MIR3129-201ENST00000581095 76 ntBASIC0.86□□□□□ -2.27
SIX1Q15475 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC0.85□□□□□ -2.27
SIX1Q15475 Y_RNA.297-201ENST00000364950 91 ntBASIC0.85□□□□□ -2.27
SIX1Q15475 Y_RNA.330-201ENST00000365230 109 ntBASIC0.85□□□□□ -2.27
SIX1Q15475 RNU6-1292P-201ENST00000383856 107 ntBASIC0.85□□□□□ -2.27
SIX1Q15475 RNU6ATAC20P-201ENST00000408436 127 ntBASIC0.85□□□□□ -2.27
SIX1Q15475 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.85□□□□□ -2.27
SIX1Q15475 RNU7-96P-201ENST00000459535 64 ntBASIC0.85□□□□□ -2.27
SIX1Q15475 RNU7-53P-201ENST00000516705 60 ntBASIC0.85□□□□□ -2.27
SIX1Q15475 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC0.85□□□□□ -2.27
SIX1Q15475 MIR4698-201ENST00000577795 80 ntBASIC0.85□□□□□ -2.27
SIX1Q15475 MIR5197-201ENST00000583721 112 ntBASIC0.85□□□□□ -2.27
SIX1Q15475 MIR6516-201ENST00000630554 81 ntBASIC0.85□□□□□ -2.27
SIX1Q15475 MIR376A2-201ENST00000636782 80 ntBASIC0.85□□□□□ -2.27
SIX1Q15475 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC0.84□□□□□ -2.27
SIX1Q15475 MIR373-201ENST00000362273 69 ntBASIC0.84□□□□□ -2.27
SIX1Q15475 RNU6-200P-201ENST00000364743 107 ntBASIC0.84□□□□□ -2.27
SIX1Q15475 RNU6-396P-201ENST00000365369 105 ntBASIC0.84□□□□□ -2.27
SIX1Q15475 MIR548J-201ENST00000408833 112 ntBASIC0.84□□□□□ -2.27
SIX1Q15475 RNU6-613P-201ENST00000410412 108 ntBASIC0.84□□□□□ -2.27
SIX1Q15475 Y_RNA.644-201ENST00000459006 113 ntBASIC0.84□□□□□ -2.27
SIX1Q15475 RNU6-998P-201ENST00000515894 101 ntBASIC0.84□□□□□ -2.27
SIX1Q15475 Y_RNA.674-201ENST00000516362 113 ntBASIC0.84□□□□□ -2.27
SIX1Q15475 MIR2115-201ENST00000516657 100 ntBASIC0.84□□□□□ -2.27
SIX1Q15475 RNU6-958P-201ENST00000516995 106 ntBASIC0.84□□□□□ -2.27
SIX1Q15475 RNU6-654P-201ENST00000364373 107 ntBASIC0.83□□□□□ -2.28
SIX1Q15475 Y_RNA.233-201ENST00000364407 101 ntBASIC0.83□□□□□ -2.28
SIX1Q15475 RNU6-913P-201ENST00000390913 95 ntBASIC0.83□□□□□ -2.28
SIX1Q15475 AL035398.1-201ENST00000430869 322 ntBASIC0.83□□□□□ -2.28
SIX1Q15475 RNU6-138P-201ENST00000515952 107 ntBASIC0.83□□□□□ -2.28
SIX1Q15475 RNU6-1219P-201ENST00000516143 112 ntBASIC0.83□□□□□ -2.28
SIX1Q15475 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC0.83□□□□□ -2.28
SIX1Q15475 MIR4431-201ENST00000579990 94 ntBASIC0.83□□□□□ -2.28
SIX1Q15475 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC0.82□□□□□ -2.28
SIX1Q15475 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC0.82□□□□□ -2.28
SIX1Q15475 Y_RNA.257-201ENST00000364596 102 ntBASIC0.82□□□□□ -2.28
SIX1Q15475 RNU6-312P-201ENST00000364629 107 ntBASIC0.82□□□□□ -2.28
SIX1Q15475 MIR200A-201ENST00000384875 90 ntBASIC0.82□□□□□ -2.28
SIX1Q15475 MT-TN-201ENST00000387400 73 ntBASIC0.82□□□□□ -2.28
SIX1Q15475 AC006461.1-201ENST00000412637 326 ntBASIC0.82□□□□□ -2.28
SIX1Q15475 AL138752.1-201ENST00000452964 351 ntBASIC0.82□□□□□ -2.28
SIX1Q15475 SNORD124-201ENST00000459577 104 ntBASIC0.82□□□□□ -2.28
SIX1Q15475 AC022559.1-201ENST00000520905 205 ntBASIC0.82□□□□□ -2.28
SIX1Q15475 AC036111.3-201ENST00000526389 112 ntBASIC0.82□□□□□ -2.28
SIX1Q15475 AC023827.1-201ENST00000569247 97 ntBASIC0.82□□□□□ -2.28
SIX1Q15475 AC131055.1-201ENST00000584626 316 ntBASIC0.82□□□□□ -2.28
SIX1Q15475 AC072026.1-201ENST00000605023 201 ntBASIC0.82□□□□□ -2.28
SIX1Q15475 AL391516.1-201ENST00000554380 2449 ntBASIC0.81□□□□□ -2.28
SIX1Q15475 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC0.81□□□□□ -2.28
SIX1Q15475 MIR377-201ENST00000362145 69 ntBASIC0.81□□□□□ -2.28
SIX1Q15475 RNU6-597P-201ENST00000365620 102 ntBASIC0.81□□□□□ -2.28
SIX1Q15475 RNU6-125P-201ENST00000384505 107 ntBASIC0.81□□□□□ -2.28
SIX1Q15475 MIR624-201ENST00000385217 97 ntBASIC0.81□□□□□ -2.28
SIX1Q15475 MIR548I3-201ENST00000408378 149 ntBASIC0.81□□□□□ -2.28
SIX1Q15475 RNA5SP127-201ENST00000411051 133 ntBASIC0.81□□□□□ -2.28
SIX1Q15475 Y_RNA.793-201ENST00000411222 111 ntBASIC0.81□□□□□ -2.28
SIX1Q15475 AC090844.1-201ENST00000422019 156 ntBASIC0.81□□□□□ -2.28
SIX1Q15475 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC0.81□□□□□ -2.28
SIX1Q15475 RNU2-11P-201ENST00000459191 187 ntBASIC0.81□□□□□ -2.28
SIX1Q15475 Y_RNA.700-201ENST00000516806 100 ntBASIC0.81□□□□□ -2.28
SIX1Q15475 MIR8055-201ENST00000610739 97 ntBASIC0.81□□□□□ -2.28
SIX1Q15475 AC106800.4-201ENST00000614905 153 ntBASIC0.81□□□□□ -2.28
SIX1Q15475 Z97988.1-201ENST00000637697 135 ntBASIC0.81□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 169.4 ms