Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 SNORA75.3-201ENST00000391231 150 ntBASIC1.76□□□□□ -2.13
SF3A1Q15459 RNU4-62P-201ENST00000410125 130 ntBASIC1.76□□□□□ -2.13
SF3A1Q15459 AP1B1P2-201ENST00000416196 106 ntBASIC1.76□□□□□ -2.13
SF3A1Q15459 PRELID3BP2-201ENST00000605362 201 ntBASIC1.76□□□□□ -2.13
SF3A1Q15459 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.75□□□□□ -2.13
SF3A1Q15459 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC1.75□□□□□ -2.13
SF3A1Q15459 RNU6-396P-201ENST00000365369 105 ntBASIC1.75□□□□□ -2.13
SF3A1Q15459 MIR320A-201ENST00000385302 82 ntBASIC1.75□□□□□ -2.13
SF3A1Q15459 MIR1323-201ENST00000408090 73 ntBASIC1.75□□□□□ -2.13
SF3A1Q15459 TRMT112P2-201ENST00000512910 132 ntBASIC1.75□□□□□ -2.13
SF3A1Q15459 RNU7-40P-201ENST00000516397 64 ntBASIC1.75□□□□□ -2.13
SF3A1Q15459 MIR3144-201ENST00000579460 79 ntBASIC1.75□□□□□ -2.13
SF3A1Q15459 AC131055.1-201ENST00000584626 316 ntBASIC1.75□□□□□ -2.13
SF3A1Q15459 RNY1P10-201ENST00000363268 113 ntBASIC1.74□□□□□ -2.13
SF3A1Q15459 RNU6-209P-201ENST00000384118 107 ntBASIC1.74□□□□□ -2.13
SF3A1Q15459 RNU6-394P-201ENST00000410735 107 ntBASIC1.74□□□□□ -2.13
SF3A1Q15459 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC1.74□□□□□ -2.13
SF3A1Q15459 SNORD79.1-201ENST00000516069 84 ntBASIC1.74□□□□□ -2.13
SF3A1Q15459 MIR2115-201ENST00000516657 100 ntBASIC1.74□□□□□ -2.13
SF3A1Q15459 AP003716.2-201ENST00000528260 108 ntBASIC1.74□□□□□ -2.13
SF3A1Q15459 AC112693.2-201ENST00000556538 232 ntBASIC1.74□□□□□ -2.13
SF3A1Q15459 AL359821.1-201ENST00000605519 182 ntBASIC1.74□□□□□ -2.13
SF3A1Q15459 Y_RNA.180-201ENST00000363867 113 ntBASIC1.73□□□□□ -2.13
SF3A1Q15459 SNORA1.1-201ENST00000364671 133 ntBASIC1.73□□□□□ -2.13
SF3A1Q15459 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC1.73□□□□□ -2.13
SF3A1Q15459 HMGN1P33-201ENST00000432945 451 ntBASIC1.73□□□□□ -2.13
SF3A1Q15459 SCARNA15-202ENST00000516881 127 ntBASIC1.73□□□□□ -2.13
SF3A1Q15459 RNU11-2P-201ENST00000516898 142 ntBASIC1.73□□□□□ -2.13
SF3A1Q15459 MIR4303-201ENST00000581299 66 ntBASIC1.73□□□□□ -2.13
SF3A1Q15459 SEPT14P17-201ENST00000617978 177 ntBASIC1.73□□□□□ -2.13
SF3A1Q15459 Y_RNA.778-201ENST00000620203 90 ntBASIC1.73□□□□□ -2.13
SF3A1Q15459 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.73□□□□□ -2.13
SF3A1Q15459 Y_RNA.398-201ENST00000383952 99 ntBASIC1.72□□□□□ -2.13
SF3A1Q15459 MIR1302-7-201ENST00000408841 72 ntBASIC1.72□□□□□ -2.13
SF3A1Q15459 MRPL35P3-201ENST00000421557 364 ntBASIC1.72□□□□□ -2.13
SF3A1Q15459 AL392103.1-201ENST00000447000 198 ntBASIC1.72□□□□□ -2.13
SF3A1Q15459 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC1.72□□□□□ -2.13
SF3A1Q15459 AL020996.3-201ENST00000606617 222 ntBASIC1.72□□□□□ -2.13
SF3A1Q15459 MIR7111-201ENST00000619751 72 ntBASIC1.72□□□□□ -2.13
SF3A1Q15459 AC008163.1-202ENST00000636004 2889 ntBASIC1.72□□□□□ -2.13
SF3A1Q15459 Y_RNA.497-201ENST00000384447 98 ntBASIC1.71□□□□□ -2.14
SF3A1Q15459 MIR517C-201ENST00000385103 95 ntBASIC1.71□□□□□ -2.14
SF3A1Q15459 Y_RNA.580-201ENST00000391004 95 ntBASIC1.71□□□□□ -2.14
SF3A1Q15459 RNU6-1190P-201ENST00000410811 104 ntBASIC1.71□□□□□ -2.14
SF3A1Q15459 AC063976.4-201ENST00000421971 163 ntBASIC1.71□□□□□ -2.14
SF3A1Q15459 RNU7-45P-201ENST00000459460 63 ntBASIC1.71□□□□□ -2.14
SF3A1Q15459 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC1.71□□□□□ -2.14
SF3A1Q15459 DNAJC19P9-201ENST00000555084 351 ntBASIC1.71□□□□□ -2.14
SF3A1Q15459 SNORD53B-201ENST00000577887 78 ntBASIC1.71□□□□□ -2.14
SF3A1Q15459 AL512598.1-201ENST00000610158 273 ntBASIC1.71□□□□□ -2.14
SF3A1Q15459 RNU1-42P-201ENST00000364033 160 ntBASIC1.7□□□□□ -2.14
SF3A1Q15459 SNORD18B-201ENST00000365659 72 ntBASIC1.7□□□□□ -2.14
SF3A1Q15459 SNORA20-201ENST00000384662 132 ntBASIC1.7□□□□□ -2.14
SF3A1Q15459 SNORD12-201ENST00000391002 90 ntBASIC1.7□□□□□ -2.14
SF3A1Q15459 Y_RNA.584-201ENST00000391090 114 ntBASIC1.7□□□□□ -2.14
SF3A1Q15459 MIR513C-201ENST00000401352 84 ntBASIC1.7□□□□□ -2.14
SF3A1Q15459 RNU7-90P-201ENST00000459216 62 ntBASIC1.7□□□□□ -2.14
SF3A1Q15459 RNU7-21P-201ENST00000459430 62 ntBASIC1.7□□□□□ -2.14
SF3A1Q15459 AP000753.3-201ENST00000604083 169 ntBASIC1.7□□□□□ -2.14
SF3A1Q15459 MIR8070-201ENST00000616510 88 ntBASIC1.7□□□□□ -2.14
SF3A1Q15459 MIR6516-201ENST00000630554 81 ntBASIC1.7□□□□□ -2.14
SF3A1Q15459 AC021753.1-201ENST00000635724 168 ntBASIC1.7□□□□□ -2.14
SF3A1Q15459 RNU6-654P-201ENST00000364373 107 ntBASIC1.69□□□□□ -2.14
SF3A1Q15459 MIR499A-201ENST00000384903 122 ntBASIC1.69□□□□□ -2.14
SF3A1Q15459 MT-TR-201ENST00000387439 65 ntBASIC1.69□□□□□ -2.14
SF3A1Q15459 RNA5SP261-201ENST00000410536 106 ntBASIC1.69□□□□□ -2.14
SF3A1Q15459 MTATP6P21-201ENST00000440681 189 ntBASIC1.69□□□□□ -2.14
SF3A1Q15459 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC1.69□□□□□ -2.14
SF3A1Q15459 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC1.69□□□□□ -2.14
SF3A1Q15459 AC027335.2-201ENST00000624030 375 ntBASIC1.69□□□□□ -2.14
SF3A1Q15459 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.69□□□□□ -2.14
SF3A1Q15459 SNORA25.9-201ENST00000365087 128 ntBASIC1.68□□□□□ -2.14
SF3A1Q15459 SNORA67.6-201ENST00000391093 99 ntBASIC1.68□□□□□ -2.14
SF3A1Q15459 RNA5SP95-201ENST00000410319 137 ntBASIC1.68□□□□□ -2.14
SF3A1Q15459 RNU6-955P-201ENST00000410497 104 ntBASIC1.68□□□□□ -2.14
SF3A1Q15459 AC090844.1-201ENST00000422019 156 ntBASIC1.68□□□□□ -2.14
SF3A1Q15459 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC1.68□□□□□ -2.14
SF3A1Q15459 AC023827.1-201ENST00000569247 97 ntBASIC1.68□□□□□ -2.14
SF3A1Q15459 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC1.68□□□□□ -2.14
SF3A1Q15459 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.67□□□□□ -2.14
SF3A1Q15459 RNU4-16P-201ENST00000364737 141 ntBASIC1.67□□□□□ -2.14
SF3A1Q15459 Y_RNA.464-201ENST00000384282 110 ntBASIC1.67□□□□□ -2.14
SF3A1Q15459 RNU6-125P-201ENST00000384505 107 ntBASIC1.67□□□□□ -2.14
SF3A1Q15459 SNORA2B-201ENST00000384583 137 ntBASIC1.67□□□□□ -2.14
SF3A1Q15459 SNORD38B-201ENST00000384690 67 ntBASIC1.67□□□□□ -2.14
SF3A1Q15459 AL354695.1-201ENST00000427935 228 ntBASIC1.67□□□□□ -2.14
SF3A1Q15459 SNORA25.12-201ENST00000516202 82 ntBASIC1.67□□□□□ -2.14
SF3A1Q15459 MTND5P41-201ENST00000517498 206 ntBASIC1.67□□□□□ -2.14
SF3A1Q15459 AL645939.4-201ENST00000604495 135 ntBASIC1.67□□□□□ -2.14
SF3A1Q15459 SNORD38B-202ENST00000625943 69 ntBASIC1.67□□□□□ -2.14
SF3A1Q15459 RNU6-60P-201ENST00000364792 103 ntBASIC1.66□□□□□ -2.14
SF3A1Q15459 RNU6-205P-201ENST00000390858 107 ntBASIC1.66□□□□□ -2.14
SF3A1Q15459 RNU6-613P-201ENST00000410412 108 ntBASIC1.66□□□□□ -2.14
SF3A1Q15459 RNU7-95P-201ENST00000459222 64 ntBASIC1.66□□□□□ -2.14
SF3A1Q15459 SNORA31.24-201ENST00000517232 57 ntBASIC1.66□□□□□ -2.14
SF3A1Q15459 MIR8055-201ENST00000610739 97 ntBASIC1.66□□□□□ -2.14
SF3A1Q15459 Z97988.1-201ENST00000637697 135 ntBASIC1.66□□□□□ -2.14
SF3A1Q15459 LEKR1-212ENST00000640869 237 ntTSL 5 BASIC1.66□□□□□ -2.14
SF3A1Q15459 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC1.66□□□□□ -2.14
SF3A1Q15459 Y_RNA.118-201ENST00000363300 101 ntBASIC1.65□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 106.7 ms