| PAX8 | Q06710 | CLRN1-AS1.1-201 | ENST00000615643 | 79 nt | BASIC | 1.02 | □□□□□ -2.25 | | |
| PAX8 | Q06710 | AC243994.1-201 | ENST00000618627 | 109 nt | BASIC | 1.02 | □□□□□ -2.25 | | |
| PAX8 | Q06710 | Y_RNA.778-201 | ENST00000620203 | 90 nt | BASIC | 1.02 | □□□□□ -2.25 | | |
| PAX8 | Q06710 | AC091895.1-201 | ENST00000624494 | 256 nt | BASIC | 1.02 | □□□□□ -2.25 | | |
| PAX8 | Q06710 | MTND1P7-201 | ENST00000632801 | 297 nt | BASIC | 1.02 | □□□□□ -2.25 | | |
| PAX8 | Q06710 | SNORA25.3-201 | ENST00000363205 | 127 nt | BASIC | 1.01 | □□□□□ -2.25 | | |
| PAX8 | Q06710 | Y_RNA.170-201 | ENST00000363746 | 110 nt | BASIC | 1.01 | □□□□□ -2.25 | | |
| PAX8 | Q06710 | SNORA24-201 | ENST00000384096 | 131 nt | BASIC | 1.01 | □□□□□ -2.25 | | |
| PAX8 | Q06710 | MIR150-201 | ENST00000385048 | 84 nt | BASIC | 1.01 | □□□□□ -2.25 | | |
| PAX8 | Q06710 | MIR1287-201 | ENST00000408492 | 90 nt | BASIC | 1.01 | □□□□□ -2.25 | | |
| PAX8 | Q06710 | MIR1276-201 | ENST00000408707 | 83 nt | BASIC | 1.01 | □□□□□ -2.25 | | |
| PAX8 | Q06710 | RPL39P39-201 | ENST00000455840 | 151 nt | BASIC | 1.01 | □□□□□ -2.25 | | |
| PAX8 | Q06710 | AC107297.1-201 | ENST00000459991 | 176 nt | BASIC | 1.01 | □□□□□ -2.25 | | |
| PAX8 | Q06710 | AC048334.1-201 | ENST00000477975 | 159 nt | BASIC | 1.01 | □□□□□ -2.25 | | |
| PAX8 | Q06710 | RPS29P24-201 | ENST00000486345 | 171 nt | BASIC | 1.01 | □□□□□ -2.25 | | |
| PAX8 | Q06710 | SCARNA15-202 | ENST00000516881 | 127 nt | BASIC | 1.01 | □□□□□ -2.25 | | |
| PAX8 | Q06710 | MTND5P32-201 | ENST00000560711 | 1802 nt | BASIC | 1.01 | □□□□□ -2.25 | | |
| PAX8 | Q06710 | Y_RNA.52-201 | ENST00000362760 | 96 nt | BASIC | 1 | □□□□□ -2.25 | | |
| PAX8 | Q06710 | RNU4-11P-201 | ENST00000365287 | 132 nt | BASIC | 1 | □□□□□ -2.25 | | |
| PAX8 | Q06710 | SNORA51.10-201 | ENST00000384418 | 136 nt | BASIC | 1 | □□□□□ -2.25 | | |
| PAX8 | Q06710 | Y_RNA.497-201 | ENST00000384447 | 98 nt | BASIC | 1 | □□□□□ -2.25 | | |
| PAX8 | Q06710 | SNORD37.2-201 | ENST00000391075 | 66 nt | BASIC | 1 | □□□□□ -2.25 | | |
| PAX8 | Q06710 | RNU6-1054P-201 | ENST00000411293 | 104 nt | BASIC | 1 | □□□□□ -2.25 | | |
| PAX8 | Q06710 | RNU7-67P-201 | ENST00000459003 | 62 nt | BASIC | 1 | □□□□□ -2.25 | | |
| PAX8 | Q06710 | AL133373.1-201 | ENST00000497098 | 94 nt | BASIC | 1 | □□□□□ -2.25 | | |
| PAX8 | Q06710 | RNU6-998P-201 | ENST00000515894 | 101 nt | BASIC | 1 | □□□□□ -2.25 | | |
| PAX8 | Q06710 | SNORA31.4-201 | ENST00000516049 | 129 nt | BASIC | 1 | □□□□□ -2.25 | | |
| PAX8 | Q06710 | RNU6-1149P-201 | ENST00000516810 | 97 nt | BASIC | 1 | □□□□□ -2.25 | | |
| PAX8 | Q06710 | RNU6-958P-201 | ENST00000516995 | 106 nt | BASIC | 1 | □□□□□ -2.25 | | |
| PAX8 | Q06710 | AP003716.2-201 | ENST00000528260 | 108 nt | BASIC | 1 | □□□□□ -2.25 | | |
| PAX8 | Q06710 | AC112693.2-201 | ENST00000556538 | 232 nt | BASIC | 1 | □□□□□ -2.25 | | |
| PAX8 | Q06710 | MIR4251-201 | ENST00000635819 | 61 nt | BASIC | 1 | □□□□□ -2.25 | | |
| PAX8 | Q06710 | MIR342-201 | ENST00000362212 | 99 nt | BASIC | 0.99 | □□□□□ -2.25 | | |
| PAX8 | Q06710 | Y_RNA.251-201 | ENST00000364551 | 99 nt | BASIC | 0.99 | □□□□□ -2.25 | | |
| PAX8 | Q06710 | Y_RNA.351-201 | ENST00000365436 | 96 nt | BASIC | 0.99 | □□□□□ -2.25 | | |
| PAX8 | Q06710 | RNU6-1067P-201 | ENST00000384752 | 107 nt | BASIC | 0.99 | □□□□□ -2.25 | | |
| PAX8 | Q06710 | RNU6-913P-201 | ENST00000390913 | 95 nt | BASIC | 0.99 | □□□□□ -2.25 | | |
| PAX8 | Q06710 | MIR1302-7-201 | ENST00000408841 | 72 nt | BASIC | 0.99 | □□□□□ -2.25 | | |
| PAX8 | Q06710 | RNU7-197P-201 | ENST00000458836 | 62 nt | BASIC | 0.99 | □□□□□ -2.25 | | |
| PAX8 | Q06710 | RNU4ATAC11P-201 | ENST00000515939 | 126 nt | BASIC | 0.99 | □□□□□ -2.25 | | |
| PAX8 | Q06710 | SNORA31.2-201 | ENST00000516019 | 134 nt | BASIC | 0.99 | □□□□□ -2.25 | | |
| PAX8 | Q06710 | RNU2-60P-201 | ENST00000517290 | 128 nt | BASIC | 0.99 | □□□□□ -2.25 | | |
| PAX8 | Q06710 | MIR548AO-201 | ENST00000579992 | 96 nt | BASIC | 0.99 | □□□□□ -2.25 | | |
| PAX8 | Q06710 | MIR6504-201 | ENST00000613520 | 61 nt | BASIC | 0.99 | □□□□□ -2.25 | | |
| PAX8 | Q06710 | LINC01359-207 | ENST00000634799 | 487 nt | TSL 5 BASIC | 0.99 | □□□□□ -2.25 | | |
| PAX8 | Q06710 | LEKR1-212 | ENST00000640869 | 237 nt | TSL 5 BASIC | 0.99 | □□□□□ -2.25 | | |
| PAX8 | Q06710 | LRRIQ1-202 | ENST00000393217 | 5394 nt | APPRIS P1 TSL 1 (best) BASIC | 0.99 | □□□□□ -2.25 | | |
| PAX8 | Q06710 | SENP7-201 | ENST00000314261 | 4736 nt | APPRIS ALT2 TSL 1 (best) BASIC | 0.98 | □□□□□ -2.25 | | |
| PAX8 | Q06710 | AP003174.1-201 | ENST00000306533 | 376 nt | TSL 2 BASIC | 0.98 | □□□□□ -2.25 | | |
| PAX8 | Q06710 | RNA5SP48-201 | ENST00000363969 | 126 nt | BASIC | 0.98 | □□□□□ -2.25 | | |
| PAX8 | Q06710 | Y_RNA.363-201 | ENST00000365529 | 113 nt | BASIC | 0.98 | □□□□□ -2.25 | | |
| PAX8 | Q06710 | AL035398.1-201 | ENST00000430869 | 322 nt | BASIC | 0.98 | □□□□□ -2.25 | | |
| PAX8 | Q06710 | AC245047.7-201 | ENST00000440265 | 293 nt | BASIC | 0.98 | □□□□□ -2.25 | | |
| PAX8 | Q06710 | RNU2-11P-201 | ENST00000459191 | 187 nt | BASIC | 0.98 | □□□□□ -2.25 | | |
| PAX8 | Q06710 | RNU7-96P-201 | ENST00000459535 | 64 nt | BASIC | 0.98 | □□□□□ -2.25 | | |
| PAX8 | Q06710 | RNU7-200P-201 | ENST00000516105 | 62 nt | BASIC | 0.98 | □□□□□ -2.25 | | |
| PAX8 | Q06710 | RNA5SP102-201 | ENST00000516865 | 106 nt | BASIC | 0.98 | □□□□□ -2.25 | | |
| PAX8 | Q06710 | AC010177.1-201 | ENST00000547819 | 366 nt | TSL 3 BASIC | 0.98 | □□□□□ -2.25 | | |
| PAX8 | Q06710 | AC131055.1-201 | ENST00000584626 | 316 nt | BASIC | 0.98 | □□□□□ -2.25 | | |
| PAX8 | Q06710 | PRELID3BP2-201 | ENST00000605362 | 201 nt | BASIC | 0.98 | □□□□□ -2.25 | | |
| PAX8 | Q06710 | JMJD1C-212 | ENST00000639129 | 7901 nt | APPRIS ALT2 TSL 5 BASIC | 0.97 | □□□□□ -2.25 | | |
| PAX8 | Q06710 | SENP7-207 | ENST00000394095 | 4945 nt | APPRIS P3 TSL 1 (best) BASIC | 0.97 | □□□□□ -2.25 | | |
| PAX8 | Q06710 | RNA5SP327-201 | ENST00000362494 | 101 nt | BASIC | 0.97 | □□□□□ -2.25 | | |
| PAX8 | Q06710 | Y_RNA.400-201 | ENST00000383963 | 111 nt | BASIC | 0.97 | □□□□□ -2.25 | | |
| PAX8 | Q06710 | SNORA70.7-201 | ENST00000384159 | 133 nt | BASIC | 0.97 | □□□□□ -2.25 | | |
| PAX8 | Q06710 | Y_RNA.506-201 | ENST00000384494 | 102 nt | BASIC | 0.97 | □□□□□ -2.25 | | |
| PAX8 | Q06710 | MIR1185-1-201 | ENST00000408598 | 86 nt | BASIC | 0.97 | □□□□□ -2.25 | | |
| PAX8 | Q06710 | RNU7-73P-201 | ENST00000458743 | 63 nt | BASIC | 0.97 | □□□□□ -2.25 | | |
| PAX8 | Q06710 | snoU13.16-201 | ENST00000459350 | 104 nt | BASIC | 0.97 | □□□□□ -2.25 | | |
| PAX8 | Q06710 | RNA5SP236-201 | ENST00000516169 | 116 nt | BASIC | 0.97 | □□□□□ -2.25 | | |
| PAX8 | Q06710 | RNU6-346P-201 | ENST00000516288 | 111 nt | BASIC | 0.97 | □□□□□ -2.25 | | |
| PAX8 | Q06710 | AC019288.1-201 | ENST00000557918 | 224 nt | BASIC | 0.97 | □□□□□ -2.25 | | |
| PAX8 | Q06710 | MIR8065-201 | ENST00000620577 | 100 nt | BASIC | 0.97 | □□□□□ -2.25 | | |
| PAX8 | Q06710 | AC091932.4-201 | ENST00000623386 | 200 nt | BASIC | 0.97 | □□□□□ -2.25 | | |
| PAX8 | Q06710 | AL596211.1-201 | ENST00000569873 | 2277 nt | BASIC | 0.96 | □□□□□ -2.26 | | |
| PAX8 | Q06710 | DENND4A-209 | ENST00000635620 | 5887 nt | TSL 5 BASIC | 0.96 | □□□□□ -2.26 | | |
| PAX8 | Q06710 | RNA5SP264-201 | ENST00000363115 | 107 nt | BASIC | 0.96 | □□□□□ -2.26 | | |
| PAX8 | Q06710 | RNU6-508P-201 | ENST00000363231 | 103 nt | BASIC | 0.96 | □□□□□ -2.26 | | |
| PAX8 | Q06710 | Y_RNA.215-201 | ENST00000364204 | 112 nt | BASIC | 0.96 | □□□□□ -2.26 | | |
| PAX8 | Q06710 | RNU6-1062P-201 | ENST00000383908 | 107 nt | BASIC | 0.96 | □□□□□ -2.26 | | |
| PAX8 | Q06710 | RNU6-1190P-201 | ENST00000410811 | 104 nt | BASIC | 0.96 | □□□□□ -2.26 | | |
| PAX8 | Q06710 | AC090844.1-201 | ENST00000422019 | 156 nt | BASIC | 0.96 | □□□□□ -2.26 | | |
| PAX8 | Q06710 | RNU7-45P-201 | ENST00000459460 | 63 nt | BASIC | 0.96 | □□□□□ -2.26 | | |
| PAX8 | Q06710 | RNU7-80P-201 | ENST00000459562 | 61 nt | BASIC | 0.96 | □□□□□ -2.26 | | |
| PAX8 | Q06710 | SNORA25.12-201 | ENST00000516202 | 82 nt | BASIC | 0.96 | □□□□□ -2.26 | | |
| PAX8 | Q06710 | MIR548X2-201 | ENST00000579776 | 100 nt | BASIC | 0.96 | □□□□□ -2.26 | | |
| PAX8 | Q06710 | MIR8055-201 | ENST00000610739 | 97 nt | BASIC | 0.96 | □□□□□ -2.26 | | |
| PAX8 | Q06710 | IL6ST-203 | ENST00000381287 | 8667 nt | TSL 5 BASIC | 0.95 | □□□□□ -2.26 | | |
| PAX8 | Q06710 | MIR103A2-201 | ENST00000362154 | 78 nt | BASIC | 0.95 | □□□□□ -2.26 | | |
| PAX8 | Q06710 | RNU6-939P-201 | ENST00000384634 | 107 nt | BASIC | 0.95 | □□□□□ -2.26 | | |
| PAX8 | Q06710 | MIR569-201 | ENST00000385228 | 96 nt | BASIC | 0.95 | □□□□□ -2.26 | | |
| PAX8 | Q06710 | MIR618-201 | ENST00000385287 | 98 nt | BASIC | 0.95 | □□□□□ -2.26 | | |
| PAX8 | Q06710 | RNU6-910P-201 | ENST00000390844 | 107 nt | BASIC | 0.95 | □□□□□ -2.26 | | |
| PAX8 | Q06710 | Y_RNA.584-201 | ENST00000391090 | 114 nt | BASIC | 0.95 | □□□□□ -2.26 | | |
| PAX8 | Q06710 | RNU6-460P-201 | ENST00000391158 | 108 nt | BASIC | 0.95 | □□□□□ -2.26 | | |
| PAX8 | Q06710 | RNU6ATAC8P-201 | ENST00000408460 | 126 nt | BASIC | 0.95 | □□□□□ -2.26 | | |
| PAX8 | Q06710 | HMGN1P33-201 | ENST00000432945 | 451 nt | BASIC | 0.95 | □□□□□ -2.26 | | |
| PAX8 | Q06710 | AL392103.1-201 | ENST00000447000 | 198 nt | BASIC | 0.95 | □□□□□ -2.26 | | |
| PAX8 | Q06710 | Y_RNA.686-201 | ENST00000516548 | 134 nt | BASIC | 0.95 | □□□□□ -2.26 | | |
| PAX8 | Q06710 | RNU7-53P-201 | ENST00000516705 | 60 nt | BASIC | 0.95 | □□□□□ -2.26 | | |