Protein–RNA interactions for Protein: Q00056

HOXA4, Homeobox protein Hox-A4, humanhuman

Predicted RBP Predictions only

Length 320 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA4Q00056 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC1.58□□□□□ -2.16
HOXA4Q00056 AC003984.1-201ENST00000450977 4104 ntTSL 1 (best) BASIC1.58□□□□□ -2.16
HOXA4Q00056 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC1.58□□□□□ -2.16
HOXA4Q00056 Y_RNA.346-201ENST00000365385 112 ntBASIC1.58□□□□□ -2.16
HOXA4Q00056 MIR9-3-201ENST00000385084 90 ntBASIC1.58□□□□□ -2.16
HOXA4Q00056 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC1.58□□□□□ -2.16
HOXA4Q00056 RNU6-554P-201ENST00000410466 106 ntBASIC1.58□□□□□ -2.16
HOXA4Q00056 RNU6-1190P-201ENST00000410811 104 ntBASIC1.58□□□□□ -2.16
HOXA4Q00056 snoU13.15-201ENST00000459407 104 ntBASIC1.58□□□□□ -2.16
HOXA4Q00056 RPL23AP42-201ENST00000471152 471 ntBASIC1.58□□□□□ -2.16
HOXA4Q00056 RNU2-35P-201ENST00000516446 142 ntBASIC1.58□□□□□ -2.16
HOXA4Q00056 RNY4P20-201ENST00000516678 93 ntBASIC1.58□□□□□ -2.16
HOXA4Q00056 RNU6-922P-201ENST00000516753 99 ntBASIC1.58□□□□□ -2.16
HOXA4Q00056 MIR4305-201ENST00000583252 102 ntBASIC1.58□□□□□ -2.16
HOXA4Q00056 MIR6845-201ENST00000613182 61 ntBASIC1.58□□□□□ -2.16
HOXA4Q00056 UGP2-230ENST00000626380 276 ntTSL 5 BASIC1.58□□□□□ -2.16
HOXA4Q00056 AP000648.3-201ENST00000623539 4507 ntBASIC1.57□□□□□ -2.16
HOXA4Q00056 Y_RNA.298-201ENST00000364960 107 ntBASIC1.57□□□□□ -2.16
HOXA4Q00056 RNU6-106P-201ENST00000384405 107 ntBASIC1.57□□□□□ -2.16
HOXA4Q00056 Y_RNA.537-201ENST00000384626 109 ntBASIC1.57□□□□□ -2.16
HOXA4Q00056 SNORD41-201ENST00000386967 70 ntBASIC1.57□□□□□ -2.16
HOXA4Q00056 MIR764-201ENST00000390811 85 ntBASIC1.57□□□□□ -2.16
HOXA4Q00056 RNA5SP136-201ENST00000410906 107 ntBASIC1.57□□□□□ -2.16
HOXA4Q00056 RNU7-164P-201ENST00000459221 62 ntBASIC1.57□□□□□ -2.16
HOXA4Q00056 snoU13.26-201ENST00000459452 105 ntBASIC1.57□□□□□ -2.16
HOXA4Q00056 RPS27P21-201ENST00000486977 252 ntBASIC1.57□□□□□ -2.16
HOXA4Q00056 RNU6-322P-201ENST00000516010 103 ntBASIC1.57□□□□□ -2.16
HOXA4Q00056 RNU7-43P-201ENST00000516554 64 ntBASIC1.57□□□□□ -2.16
HOXA4Q00056 AL627230.6-201ENST00000611129 280 ntBASIC1.57□□□□□ -2.16
HOXA4Q00056 AC021613.1-201ENST00000623880 111 ntBASIC1.57□□□□□ -2.16
HOXA4Q00056 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC1.57□□□□□ -2.16
HOXA4Q00056 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.56□□□□□ -2.16
HOXA4Q00056 Y_RNA.116-201ENST00000363292 103 ntBASIC1.56□□□□□ -2.16
HOXA4Q00056 SNORA70.7-201ENST00000384159 133 ntBASIC1.56□□□□□ -2.16
HOXA4Q00056 SNORA51.10-201ENST00000384418 136 ntBASIC1.56□□□□□ -2.16
HOXA4Q00056 RNU6-1067P-201ENST00000384752 107 ntBASIC1.56□□□□□ -2.16
HOXA4Q00056 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC1.56□□□□□ -2.16
HOXA4Q00056 U8.13-201ENST00000390842 128 ntBASIC1.56□□□□□ -2.16
HOXA4Q00056 AL451046.2-201ENST00000403074 277 ntBASIC1.56□□□□□ -2.16
HOXA4Q00056 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC1.56□□□□□ -2.16
HOXA4Q00056 RNU7-41P-201ENST00000515917 61 ntBASIC1.56□□□□□ -2.16
HOXA4Q00056 RNU7-53P-201ENST00000516705 60 ntBASIC1.56□□□□□ -2.16
HOXA4Q00056 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC1.56□□□□□ -2.16
HOXA4Q00056 AL513534.2-201ENST00000603836 250 ntBASIC1.56□□□□□ -2.16
HOXA4Q00056 MIR8063-201ENST00000621930 81 ntBASIC1.56□□□□□ -2.16
HOXA4Q00056 AC008133.2-201ENST00000624540 351 ntBASIC1.56□□□□□ -2.16
HOXA4Q00056 MIR4679-1-201ENST00000637619 75 ntBASIC1.56□□□□□ -2.16
HOXA4Q00056 RNU6-880P-201ENST00000384526 107 ntBASIC1.55□□□□□ -2.16
HOXA4Q00056 RNU6-1319P-201ENST00000390855 104 ntBASIC1.55□□□□□ -2.16
HOXA4Q00056 RNU6-747P-201ENST00000390928 104 ntBASIC1.55□□□□□ -2.16
HOXA4Q00056 RNU6-241P-201ENST00000391148 104 ntBASIC1.55□□□□□ -2.16
HOXA4Q00056 SNORA26.6-201ENST00000391256 115 ntBASIC1.55□□□□□ -2.16
HOXA4Q00056 SNORA19.1-201ENST00000410656 129 ntBASIC1.55□□□□□ -2.16
HOXA4Q00056 RNA5SP144-201ENST00000410846 116 ntBASIC1.55□□□□□ -2.16
HOXA4Q00056 RNU6-177P-201ENST00000411257 104 ntBASIC1.55□□□□□ -2.16
HOXA4Q00056 AC035139.1-201ENST00000423256 273 ntTSL 3 BASIC1.55□□□□□ -2.16
HOXA4Q00056 AL512326.2-201ENST00000426359 151 ntBASIC1.55□□□□□ -2.16
HOXA4Q00056 HMGN1P33-201ENST00000432945 451 ntBASIC1.55□□□□□ -2.16
HOXA4Q00056 RNU7-73P-201ENST00000458743 63 ntBASIC1.55□□□□□ -2.16
HOXA4Q00056 snoU13.9-201ENST00000458927 103 ntBASIC1.55□□□□□ -2.16
HOXA4Q00056 RNU7-123P-201ENST00000515911 60 ntBASIC1.55□□□□□ -2.16
HOXA4Q00056 MIR3935-201ENST00000583472 104 ntBASIC1.55□□□□□ -2.16
HOXA4Q00056 SNORD1A-201ENST00000364968 72 ntBASIC1.54□□□□□ -2.16
HOXA4Q00056 MIR30A-201ENST00000385092 71 ntBASIC1.54□□□□□ -2.16
HOXA4Q00056 MIR676-201ENST00000390702 67 ntBASIC1.54□□□□□ -2.16
HOXA4Q00056 POLR2J4-204ENST00000418424 324 ntBASIC1.54□□□□□ -2.16
HOXA4Q00056 HMGN2P19-201ENST00000425149 265 ntBASIC1.54□□□□□ -2.16
HOXA4Q00056 HSPE1P24-201ENST00000450782 238 ntBASIC1.54□□□□□ -2.16
HOXA4Q00056 RNA5SP233-201ENST00000459153 113 ntBASIC1.54□□□□□ -2.16
HOXA4Q00056 RNU6-168P-201ENST00000516189 101 ntBASIC1.54□□□□□ -2.16
HOXA4Q00056 RNU6-1258P-201ENST00000516911 111 ntBASIC1.54□□□□□ -2.16
HOXA4Q00056 SNORA44.1-201ENST00000517031 108 ntBASIC1.54□□□□□ -2.16
HOXA4Q00056 AC007012.1-201ENST00000567192 175 ntBASIC1.54□□□□□ -2.16
HOXA4Q00056 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC1.54□□□□□ -2.16
HOXA4Q00056 MIR3683-201ENST00000580847 82 ntBASIC1.54□□□□□ -2.16
HOXA4Q00056 MIR3192-201ENST00000584920 77 ntBASIC1.54□□□□□ -2.16
HOXA4Q00056 AL020996.3-201ENST00000606617 222 ntBASIC1.54□□□□□ -2.16
HOXA4Q00056 MIR8055-201ENST00000610739 97 ntBASIC1.54□□□□□ -2.16
HOXA4Q00056 MIR6717-201ENST00000622747 73 ntBASIC1.54□□□□□ -2.16
HOXA4Q00056 MIR302D-201ENST00000362275 68 ntBASIC1.53□□□□□ -2.16
HOXA4Q00056 SNORA16.1-201ENST00000364597 132 ntBASIC1.53□□□□□ -2.16
HOXA4Q00056 Y_RNA.344-201ENST00000365381 112 ntBASIC1.53□□□□□ -2.16
HOXA4Q00056 SNORD12C-201ENST00000386307 89 ntBASIC1.53□□□□□ -2.16
HOXA4Q00056 snoU13.16-201ENST00000459350 104 ntBASIC1.53□□□□□ -2.16
HOXA4Q00056 AC079804.2-201ENST00000490376 200 ntBASIC1.53□□□□□ -2.16
HOXA4Q00056 COX6CP6-201ENST00000490840 228 ntBASIC1.53□□□□□ -2.16
HOXA4Q00056 RN7SL274P-201ENST00000492268 272 ntBASIC1.53□□□□□ -2.16
HOXA4Q00056 MIR548AO-201ENST00000579992 96 ntBASIC1.53□□□□□ -2.16
HOXA4Q00056 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1.53□□□□□ -2.16
HOXA4Q00056 SNORA63.5-201ENST00000363548 123 ntBASIC1.52□□□□□ -2.17
HOXA4Q00056 Y_RNA.171-201ENST00000363760 102 ntBASIC1.52□□□□□ -2.17
HOXA4Q00056 Y_RNA.198-201ENST00000364013 98 ntBASIC1.52□□□□□ -2.17
HOXA4Q00056 Y_RNA.281-201ENST00000364774 94 ntBASIC1.52□□□□□ -2.17
HOXA4Q00056 RNU6-1107P-201ENST00000364817 104 ntBASIC1.52□□□□□ -2.17
HOXA4Q00056 MIR583-201ENST00000384846 75 ntBASIC1.52□□□□□ -2.17
HOXA4Q00056 SUMO2P12-201ENST00000405924 140 ntBASIC1.52□□□□□ -2.17
HOXA4Q00056 MIR1270-201ENST00000459320 83 ntBASIC1.52□□□□□ -2.17
HOXA4Q00056 MIR514B-201ENST00000516774 80 ntBASIC1.52□□□□□ -2.17
HOXA4Q00056 RNA5SP170-201ENST00000517150 101 ntBASIC1.52□□□□□ -2.17
HOXA4Q00056 AC004812.1-201ENST00000540773 146 ntBASIC1.52□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 87 ms