Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 MIR5582-201ENST00000579697 68 ntBASIC2.16□□□□□ -2.06
RNF4P78317 AP001318.4-201ENST00000616637 121 ntBASIC2.16□□□□□ -2.06
RNF4P78317 EYS-211ENST00000503581 10589 ntAPPRIS P3 TSL 5 BASIC2.15□□□□□ -2.06
RNF4P78317 RNU4-52P-201ENST00000384209 138 ntBASIC2.15□□□□□ -2.07
RNF4P78317 MIR1912-201ENST00000410389 80 ntBASIC2.15□□□□□ -2.07
RNF4P78317 AL161935.2-201ENST00000414627 60 ntBASIC2.15□□□□□ -2.07
RNF4P78317 HMGN2P38-201ENST00000423806 265 ntBASIC2.15□□□□□ -2.07
RNF4P78317 JTBP1-201ENST00000441314 247 ntBASIC2.15□□□□□ -2.07
RNF4P78317 MIR1270-201ENST00000459320 83 ntBASIC2.15□□□□□ -2.07
RNF4P78317 AC090255.1-201ENST00000495779 349 ntBASIC2.15□□□□□ -2.07
RNF4P78317 MIR514B-201ENST00000516774 80 ntBASIC2.15□□□□□ -2.07
RNF4P78317 MIR4287-201ENST00000579398 78 ntBASIC2.15□□□□□ -2.07
RNF4P78317 MIR5007-201ENST00000583098 95 ntBASIC2.15□□□□□ -2.07
RNF4P78317 AC064859.1-201ENST00000624741 174 ntBASIC2.15□□□□□ -2.07
RNF4P78317 SIRT1-203ENST00000406900 3295 ntTSL 2 BASIC2.15□□□□□ -2.07
RNF4P78317 AC005336.3-201ENST00000623833 2679 ntBASIC2.14□□□□□ -2.07
RNF4P78317 AC131280.1-202ENST00000624067 4211 ntBASIC2.14□□□□□ -2.07
RNF4P78317 SNORD115-19-201ENST00000363098 82 ntBASIC2.14□□□□□ -2.07
RNF4P78317 SNORD115-18-201ENST00000363293 82 ntBASIC2.14□□□□□ -2.07
RNF4P78317 Y_RNA.155-201ENST00000363632 101 ntBASIC2.14□□□□□ -2.07
RNF4P78317 SNORD115-17-201ENST00000364612 82 ntBASIC2.14□□□□□ -2.07
RNF4P78317 Y_RNA.299-201ENST00000364973 94 ntBASIC2.14□□□□□ -2.07
RNF4P78317 RNA5SP126-201ENST00000365092 109 ntBASIC2.14□□□□□ -2.07
RNF4P78317 Y_RNA.430-201ENST00000384081 110 ntBASIC2.14□□□□□ -2.07
RNF4P78317 Y_RNA.507-201ENST00000384500 99 ntBASIC2.14□□□□□ -2.07
RNF4P78317 RPS3AP1-201ENST00000413190 320 ntBASIC2.14□□□□□ -2.07
RNF4P78317 AL356379.1-201ENST00000414105 126 ntBASIC2.14□□□□□ -2.07
RNF4P78317 RNU7-41P-201ENST00000515917 61 ntBASIC2.14□□□□□ -2.07
RNF4P78317 RNU6-322P-201ENST00000516010 103 ntBASIC2.14□□□□□ -2.07
RNF4P78317 RNU6-922P-201ENST00000516753 99 ntBASIC2.14□□□□□ -2.07
RNF4P78317 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC2.14□□□□□ -2.07
RNF4P78317 MIR4679-1-201ENST00000637619 75 ntBASIC2.14□□□□□ -2.07
RNF4P78317 SNORD115-2-201ENST00000362842 82 ntBASIC2.13□□□□□ -2.07
RNF4P78317 SNORD115-20-201ENST00000365099 82 ntBASIC2.13□□□□□ -2.07
RNF4P78317 RNU6-301P-201ENST00000384277 107 ntBASIC2.13□□□□□ -2.07
RNF4P78317 RNU6-616P-201ENST00000384353 107 ntBASIC2.13□□□□□ -2.07
RNF4P78317 RNA5SP212-201ENST00000391223 107 ntBASIC2.13□□□□□ -2.07
RNF4P78317 AL451046.2-201ENST00000403074 277 ntBASIC2.13□□□□□ -2.07
RNF4P78317 SNORD111.1-201ENST00000516421 86 ntBASIC2.13□□□□□ -2.07
RNF4P78317 AL160408.5-201ENST00000607759 526 ntTSL 4 BASIC2.13□□□□□ -2.07
RNF4P78317 AL773524.1-201ENST00000614065 229 ntBASIC2.13□□□□□ -2.07
RNF4P78317 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC2.13□□□□□ -2.07
RNF4P78317 AL359851.1-201ENST00000569460 4997 ntBASIC2.13□□□□□ -2.07
RNF4P78317 Y_RNA.544-201ENST00000384650 113 ntBASIC2.12□□□□□ -2.07
RNF4P78317 SNORD77B-201ENST00000391112 67 ntBASIC2.12□□□□□ -2.07
RNF4P78317 ATP6V0E1P1-201ENST00000412537 226 ntBASIC2.12□□□□□ -2.07
RNF4P78317 AC244636.1-201ENST00000421152 228 ntBASIC2.12□□□□□ -2.07
RNF4P78317 RNU6-904P-201ENST00000516206 101 ntBASIC2.12□□□□□ -2.07
RNF4P78317 MIR548AO-201ENST00000579992 96 ntBASIC2.12□□□□□ -2.07
RNF4P78317 AC006254.2-201ENST00000603259 279 ntBASIC2.12□□□□□ -2.07
RNF4P78317 MIR4251-201ENST00000635819 61 ntBASIC2.12□□□□□ -2.07
RNF4P78317 RNU4-67P-201ENST00000364569 141 ntBASIC2.11□□□□□ -2.07
RNF4P78317 RNU6-342P-201ENST00000384521 104 ntBASIC2.11□□□□□ -2.07
RNF4P78317 MIR17-201ENST00000385012 84 ntBASIC2.11□□□□□ -2.07
RNF4P78317 MIR653-201ENST00000385279 96 ntBASIC2.11□□□□□ -2.07
RNF4P78317 SNORA7.5-201ENST00000410672 110 ntBASIC2.11□□□□□ -2.07
RNF4P78317 AC090844.1-201ENST00000422019 156 ntBASIC2.11□□□□□ -2.07
RNF4P78317 RNU6ATAC9P-201ENST00000516210 116 ntBASIC2.11□□□□□ -2.07
RNF4P78317 MIR8055-201ENST00000610739 97 ntBASIC2.11□□□□□ -2.07
RNF4P78317 MIR6766-201ENST00000622641 72 ntBASIC2.11□□□□□ -2.07
RNF4P78317 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC2.11□□□□□ -2.07
RNF4P78317 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC2.11□□□□□ -2.07
RNF4P78317 RNU6-363P-201ENST00000362895 105 ntBASIC2.1□□□□□ -2.07
RNF4P78317 MIR605-201ENST00000385078 83 ntBASIC2.1□□□□□ -2.07
RNF4P78317 SNORD41-201ENST00000386967 70 ntBASIC2.1□□□□□ -2.07
RNF4P78317 SNORA3.2-201ENST00000408221 125 ntBASIC2.1□□□□□ -2.07
RNF4P78317 SNORA11.2-201ENST00000408318 127 ntBASIC2.1□□□□□ -2.07
RNF4P78317 Z98742.3-201ENST00000418637 326 ntBASIC2.1□□□□□ -2.07
RNF4P78317 AL356320.1-201ENST00000429616 163 ntBASIC2.1□□□□□ -2.07
RNF4P78317 AC245047.7-201ENST00000440265 293 ntBASIC2.1□□□□□ -2.07
RNF4P78317 SNORA40.13-201ENST00000516379 120 ntBASIC2.1□□□□□ -2.07
RNF4P78317 AC022254.1-201ENST00000567857 235 ntBASIC2.1□□□□□ -2.07
RNF4P78317 FGF7-206ENST00000614567 3936 ntAPPRIS P1 TSL 1 (best) BASIC2.1□□□□□ -2.07
RNF4P78317 TTK-202ENST00000369798 3010 ntAPPRIS P3 TSL 1 (best) BASIC2.09□□□□□ -2.07
RNF4P78317 Y_RNA.78-201ENST00000362970 110 ntBASIC2.09□□□□□ -2.07
RNF4P78317 RNU6-1131P-201ENST00000364955 107 ntBASIC2.09□□□□□ -2.07
RNF4P78317 Y_RNA.360-201ENST00000365512 102 ntBASIC2.09□□□□□ -2.07
RNF4P78317 RNU6-409P-201ENST00000384114 104 ntBASIC2.09□□□□□ -2.07
RNF4P78317 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC2.09□□□□□ -2.07
RNF4P78317 RNA5SP425-201ENST00000410336 112 ntBASIC2.09□□□□□ -2.07
RNF4P78317 RNU6-733P-201ENST00000410759 104 ntBASIC2.09□□□□□ -2.07
RNF4P78317 AL162400.2-201ENST00000427547 157 ntTSL 3 BASIC2.09□□□□□ -2.07
RNF4P78317 RNA5SP233-201ENST00000459153 113 ntBASIC2.09□□□□□ -2.07
RNF4P78317 DEFB131E-201ENST00000532329 154 ntBASIC2.09□□□□□ -2.07
RNF4P78317 CYP3A52P-201ENST00000563326 91 ntBASIC2.09□□□□□ -2.07
RNF4P78317 MIR8065-201ENST00000620577 100 ntBASIC2.09□□□□□ -2.07
RNF4P78317 Z97988.1-201ENST00000637697 135 ntBASIC2.09□□□□□ -2.07
RNF4P78317 CEP57L1-216ENST00000521522 2259 ntTSL 5 BASIC2.08□□□□□ -2.08
RNF4P78317 OSTN-201ENST00000339051 402 ntAPPRIS P1 TSL 1 (best) BASIC2.08□□□□□ -2.08
RNF4P78317 RNY3P2-201ENST00000362918 102 ntBASIC2.08□□□□□ -2.08
RNF4P78317 SNORA18-201ENST00000384416 132 ntBASIC2.08□□□□□ -2.08
RNF4P78317 MIR221-201ENST00000385135 110 ntBASIC2.08□□□□□ -2.08
RNF4P78317 AC019129.1-201ENST00000403786 261 ntBASIC2.08□□□□□ -2.08
RNF4P78317 RNU6-602P-201ENST00000411155 105 ntBASIC2.08□□□□□ -2.08
RNF4P78317 AL353813.1-201ENST00000440700 253 ntBASIC2.08□□□□□ -2.08
RNF4P78317 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC2.08□□□□□ -2.08
RNF4P78317 AC108752.1-201ENST00000484679 576 ntTSL 5 BASIC2.08□□□□□ -2.08
RNF4P78317 IGHVIII-5-1-201ENST00000523059 99 ntBASIC2.08□□□□□ -2.08
RNF4P78317 MIR4299-201ENST00000577899 72 ntBASIC2.08□□□□□ -2.08
RNF4P78317 Y_RNA.818-201ENST00000618813 71 ntBASIC2.08□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 215.1 ms