Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 RNU6-570P-201ENST00000517051 105 ntBASIC0.45□□□□□ -2.34
LIM2P55344 RNU6-1270P-201ENST00000517128 108 ntBASIC0.45□□□□□ -2.34
LIM2P55344 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC0.45□□□□□ -2.34
LIM2P55344 MIR4804-201ENST00000581683 73 ntBASIC0.45□□□□□ -2.34
LIM2P55344 uc_338.17-201ENST00000619633 179 ntBASIC0.45□□□□□ -2.34
LIM2P55344 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC0.44□□□□□ -2.34
LIM2P55344 Y_RNA.117-201ENST00000363294 101 ntBASIC0.44□□□□□ -2.34
LIM2P55344 Y_RNA.237-201ENST00000364439 102 ntBASIC0.44□□□□□ -2.34
LIM2P55344 RNU6-945P-201ENST00000383947 107 ntBASIC0.44□□□□□ -2.34
LIM2P55344 Y_RNA.440-201ENST00000384120 114 ntBASIC0.44□□□□□ -2.34
LIM2P55344 MIR520F-201ENST00000384824 87 ntBASIC0.44□□□□□ -2.34
LIM2P55344 MT-TF-201ENST00000387314 71 ntBASIC0.44□□□□□ -2.34
LIM2P55344 AF228730.3-201ENST00000436691 102 ntBASIC0.44□□□□□ -2.34
LIM2P55344 snoU13.2-201ENST00000459201 104 ntBASIC0.44□□□□□ -2.34
LIM2P55344 RNU6-229P-201ENST00000516614 102 ntBASIC0.44□□□□□ -2.34
LIM2P55344 MIR4771-2-201ENST00000577758 74 ntBASIC0.44□□□□□ -2.34
LIM2P55344 MIR4771-1-201ENST00000582617 74 ntBASIC0.44□□□□□ -2.34
LIM2P55344 MIR4676-201ENST00000583078 72 ntBASIC0.44□□□□□ -2.34
LIM2P55344 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC0.43□□□□□ -2.34
LIM2P55344 MIR563-201ENST00000385080 79 ntBASIC0.43□□□□□ -2.34
LIM2P55344 MIR520H-201ENST00000385126 88 ntBASIC0.43□□□□□ -2.34
LIM2P55344 MIR140-201ENST00000385282 100 ntBASIC0.43□□□□□ -2.34
LIM2P55344 Y_RNA.590-201ENST00000410140 107 ntBASIC0.43□□□□□ -2.34
LIM2P55344 SNORD83.1-201ENST00000411362 77 ntBASIC0.43□□□□□ -2.34
LIM2P55344 AC114737.2-201ENST00000421583 173 ntBASIC0.43□□□□□ -2.34
LIM2P55344 SNRPGP8-201ENST00000454064 226 ntBASIC0.43□□□□□ -2.34
LIM2P55344 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.43□□□□□ -2.34
LIM2P55344 MIR8062-201ENST00000621515 85 ntBASIC0.43□□□□□ -2.34
LIM2P55344 IST1-227ENST00000626438 126 ntTSL 5 BASIC0.43□□□□□ -2.34
LIM2P55344 RNU6-103P-201ENST00000363686 107 ntBASIC0.42□□□□□ -2.34
LIM2P55344 RNU6-1292P-201ENST00000383856 107 ntBASIC0.42□□□□□ -2.34
LIM2P55344 Y_RNA.454-201ENST00000384224 113 ntBASIC0.42□□□□□ -2.34
LIM2P55344 RNU6-342P-201ENST00000384521 104 ntBASIC0.42□□□□□ -2.34
LIM2P55344 RNU6-1237P-201ENST00000384777 107 ntBASIC0.42□□□□□ -2.34
LIM2P55344 MIR938-201ENST00000401216 83 ntBASIC0.42□□□□□ -2.34
LIM2P55344 RNU6-1165P-201ENST00000410119 107 ntBASIC0.42□□□□□ -2.34
LIM2P55344 RNU4-43P-201ENST00000410628 137 ntBASIC0.42□□□□□ -2.34
LIM2P55344 RNA5SP222-201ENST00000411039 105 ntBASIC0.42□□□□□ -2.34
LIM2P55344 RNU6-602P-201ENST00000411155 105 ntBASIC0.42□□□□□ -2.34
LIM2P55344 AL353742.1-201ENST00000453455 224 ntTSL 3 BASIC0.42□□□□□ -2.34
LIM2P55344 RNU7-56P-201ENST00000458744 62 ntBASIC0.42□□□□□ -2.34
LIM2P55344 RNU6-1132P-201ENST00000459214 107 ntBASIC0.42□□□□□ -2.34
LIM2P55344 RNU7-80P-201ENST00000459562 61 ntBASIC0.42□□□□□ -2.34
LIM2P55344 RNA5SP436-201ENST00000516020 115 ntBASIC0.42□□□□□ -2.34
LIM2P55344 AL442663.2-201ENST00000554385 511 ntBASIC0.42□□□□□ -2.34
LIM2P55344 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC0.42□□□□□ -2.34
LIM2P55344 AC006504.6-201ENST00000590142 199 ntBASIC0.42□□□□□ -2.34
LIM2P55344 MIR6740-201ENST00000618268 113 ntBASIC0.42□□□□□ -2.34
LIM2P55344 MIR7111-201ENST00000619751 72 ntBASIC0.42□□□□□ -2.34
LIM2P55344 MIR5087-201ENST00000635826 76 ntBASIC0.42□□□□□ -2.34
LIM2P55344 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC0.41□□□□□ -2.34
LIM2P55344 Y_RNA.91-201ENST00000363042 107 ntBASIC0.41□□□□□ -2.34
LIM2P55344 snoU2_19.4-201ENST00000364329 80 ntBASIC0.41□□□□□ -2.34
LIM2P55344 MIR588-201ENST00000384900 83 ntBASIC0.41□□□□□ -2.34
LIM2P55344 RNU6-381P-201ENST00000391259 108 ntBASIC0.41□□□□□ -2.34
LIM2P55344 AL606845.1-201ENST00000404881 255 ntBASIC0.41□□□□□ -2.34
LIM2P55344 MIR1302-6-201ENST00000408466 90 ntBASIC0.41□□□□□ -2.34
LIM2P55344 RNU2-11P-201ENST00000459191 187 ntBASIC0.41□□□□□ -2.34
LIM2P55344 Y_RNA.720-201ENST00000517166 92 ntBASIC0.41□□□□□ -2.34
LIM2P55344 AC020891.4-201ENST00000605745 93 ntBASIC0.41□□□□□ -2.34
LIM2P55344 AL589743.1-201ENST00000551932 2712 ntBASIC0.41□□□□□ -2.34
LIM2P55344 Y_RNA.352-201ENST00000365439 102 ntBASIC0.4□□□□□ -2.35
LIM2P55344 RNU4-17P-201ENST00000365598 141 ntBASIC0.4□□□□□ -2.35
LIM2P55344 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC0.4□□□□□ -2.35
LIM2P55344 Y_RNA.430-201ENST00000384081 110 ntBASIC0.4□□□□□ -2.35
LIM2P55344 SNORA50A-201ENST00000384225 134 ntBASIC0.4□□□□□ -2.35
LIM2P55344 MT-TT-201ENST00000387460 66 ntBASIC0.4□□□□□ -2.35
LIM2P55344 SNORA79-201ENST00000408376 140 ntBASIC0.4□□□□□ -2.35
LIM2P55344 Y_RNA.679-201ENST00000516416 91 ntBASIC0.4□□□□□ -2.35
LIM2P55344 RNU6-635P-201ENST00000516651 102 ntBASIC0.4□□□□□ -2.35
LIM2P55344 AL122017.1-202ENST00000570612 319 ntTSL 5 BASIC0.4□□□□□ -2.35
LIM2P55344 MIR5197-201ENST00000583721 112 ntBASIC0.4□□□□□ -2.35
LIM2P55344 AL365205.2-201ENST00000594586 68 ntBASIC0.4□□□□□ -2.35
LIM2P55344 MIR18A-201ENST00000362310 71 ntBASIC0.39□□□□□ -2.35
LIM2P55344 Y_RNA.262-201ENST00000364641 102 ntBASIC0.39□□□□□ -2.35
LIM2P55344 RNU6-728P-201ENST00000365375 104 ntBASIC0.39□□□□□ -2.35
LIM2P55344 SNORA36.2-201ENST00000384004 127 ntBASIC0.39□□□□□ -2.35
LIM2P55344 RNU6-1160P-201ENST00000384546 104 ntBASIC0.39□□□□□ -2.35
LIM2P55344 MIR125B2-201ENST00000385128 89 ntBASIC0.39□□□□□ -2.35
LIM2P55344 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC0.39□□□□□ -2.35
LIM2P55344 MIR936-201ENST00000401264 98 ntBASIC0.39□□□□□ -2.35
LIM2P55344 MIR1257-201ENST00000408490 117 ntBASIC0.39□□□□□ -2.35
LIM2P55344 SNORD100-201ENST00000408573 76 ntBASIC0.39□□□□□ -2.35
LIM2P55344 RNU6-651P-201ENST00000411040 105 ntBASIC0.39□□□□□ -2.35
LIM2P55344 Y_RNA.622-201ENST00000411091 108 ntBASIC0.39□□□□□ -2.35
LIM2P55344 HMGN1P33-201ENST00000432945 451 ntBASIC0.39□□□□□ -2.35
LIM2P55344 RNU6-1153P-201ENST00000516760 105 ntBASIC0.39□□□□□ -2.35
LIM2P55344 RNU6-453P-201ENST00000516819 85 ntBASIC0.39□□□□□ -2.35
LIM2P55344 MIR3612-201ENST00000579753 87 ntBASIC0.39□□□□□ -2.35
LIM2P55344 SNORD92-201ENST00000585078 85 ntBASIC0.39□□□□□ -2.35
LIM2P55344 TTC28-AS1_2.1-201ENST00000611117 157 ntBASIC0.39□□□□□ -2.35
LIM2P55344 AL365265.1-201ENST00000621045 234 ntBASIC0.39□□□□□ -2.35
LIM2P55344 AC243829.3-201ENST00000622177 108 ntBASIC0.39□□□□□ -2.35
LIM2P55344 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC0.38□□□□□ -2.35
LIM2P55344 AC010332.2-201ENST00000613083 1904 ntBASIC0.38□□□□□ -2.35
LIM2P55344 RNU6-653P-201ENST00000363074 106 ntBASIC0.38□□□□□ -2.35
LIM2P55344 Y_RNA.199-201ENST00000364014 102 ntBASIC0.38□□□□□ -2.35
LIM2P55344 Y_RNA.461-201ENST00000384263 103 ntBASIC0.38□□□□□ -2.35
LIM2P55344 Y_RNA.574-201ENST00000384766 95 ntBASIC0.38□□□□□ -2.35
LIM2P55344 RNU6-1319P-201ENST00000390855 104 ntBASIC0.38□□□□□ -2.35
Retrieved 100 of 98,524 protein–RNA pairs in 172.4 ms