Protein–RNA interactions for Protein: P52945

PDX1, Pancreas/duodenum homeobox protein 1, humanhuman

Predictions only

Length 283 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDX1P52945 MIR3129-201ENST00000581095 76 ntBASIC0.99□□□□□ -2.25
PDX1P52945 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC0.99□□□□□ -2.25
PDX1P52945 AC134878.1-201ENST00000619901 243 ntBASIC0.99□□□□□ -2.25
PDX1P52945 MIR6516-201ENST00000630554 81 ntBASIC0.99□□□□□ -2.25
PDX1P52945 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC0.99□□□□□ -2.25
PDX1P52945 SNORA27-201ENST00000384323 126 ntBASIC0.98□□□□□ -2.25
PDX1P52945 RNU4-70P-201ENST00000384579 139 ntBASIC0.98□□□□□ -2.25
PDX1P52945 SNORA40.5-201ENST00000391061 128 ntBASIC0.98□□□□□ -2.25
PDX1P52945 SNORD77.3-201ENST00000391113 65 ntBASIC0.98□□□□□ -2.25
PDX1P52945 AC090844.1-201ENST00000422019 156 ntBASIC0.98□□□□□ -2.25
PDX1P52945 RNU7-90P-201ENST00000459216 62 ntBASIC0.98□□□□□ -2.25
PDX1P52945 AC211469.2-201ENST00000605461 205 ntBASIC0.98□□□□□ -2.25
PDX1P52945 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC0.98□□□□□ -2.25
PDX1P52945 U6.106-201ENST00000636360 105 ntBASIC0.98□□□□□ -2.25
PDX1P52945 RNU6-978P-201ENST00000364371 103 ntBASIC0.97□□□□□ -2.25
PDX1P52945 RNU4-38P-201ENST00000364472 129 ntBASIC0.97□□□□□ -2.25
PDX1P52945 RNU6-275P-201ENST00000364910 107 ntBASIC0.97□□□□□ -2.25
PDX1P52945 RNU6-913P-201ENST00000390913 95 ntBASIC0.97□□□□□ -2.25
PDX1P52945 MRPL35P3-201ENST00000421557 364 ntBASIC0.97□□□□□ -2.25
PDX1P52945 RPS29P28-201ENST00000446439 141 ntBASIC0.97□□□□□ -2.25
PDX1P52945 AL138752.1-201ENST00000452964 351 ntBASIC0.97□□□□□ -2.25
PDX1P52945 RPS29P24-201ENST00000486345 171 ntBASIC0.97□□□□□ -2.25
PDX1P52945 RNA5SP436-201ENST00000516020 115 ntBASIC0.97□□□□□ -2.25
PDX1P52945 RNU6-388P-201ENST00000517012 105 ntBASIC0.97□□□□□ -2.25
PDX1P52945 RNU6-389P-201ENST00000517048 105 ntBASIC0.97□□□□□ -2.25
PDX1P52945 AC022559.1-201ENST00000520905 205 ntBASIC0.97□□□□□ -2.25
PDX1P52945 MIR3973-201ENST00000579824 107 ntBASIC0.97□□□□□ -2.25
PDX1P52945 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC0.97□□□□□ -2.25
PDX1P52945 RNU6-643P-201ENST00000384018 107 ntBASIC0.96□□□□□ -2.26
PDX1P52945 Y_RNA.440-201ENST00000384120 114 ntBASIC0.96□□□□□ -2.26
PDX1P52945 RNU6-125P-201ENST00000384505 107 ntBASIC0.96□□□□□ -2.26
PDX1P52945 RNU6-1067P-201ENST00000384752 107 ntBASIC0.96□□□□□ -2.26
PDX1P52945 MIR598-201ENST00000384868 97 ntBASIC0.96□□□□□ -2.26
PDX1P52945 MT-TG-201ENST00000387429 68 ntBASIC0.96□□□□□ -2.26
PDX1P52945 SNORA79-201ENST00000408376 140 ntBASIC0.96□□□□□ -2.26
PDX1P52945 RNU7-67P-201ENST00000459003 62 ntBASIC0.96□□□□□ -2.26
PDX1P52945 RNU6-958P-201ENST00000516995 106 ntBASIC0.96□□□□□ -2.26
PDX1P52945 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC0.96□□□□□ -2.26
PDX1P52945 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC0.96□□□□□ -2.26
PDX1P52945 AC131055.1-201ENST00000584626 316 ntBASIC0.96□□□□□ -2.26
PDX1P52945 AL365205.2-201ENST00000594586 68 ntBASIC0.96□□□□□ -2.26
PDX1P52945 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC0.95□□□□□ -2.26
PDX1P52945 SNORD114-26-201ENST00000363543 72 ntBASIC0.95□□□□□ -2.26
PDX1P52945 RNU6-1020P-201ENST00000363684 107 ntBASIC0.95□□□□□ -2.26
PDX1P52945 RNU6-1189P-201ENST00000383958 107 ntBASIC0.95□□□□□ -2.26
PDX1P52945 Y_RNA.435-201ENST00000384095 112 ntBASIC0.95□□□□□ -2.26
PDX1P52945 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC0.95□□□□□ -2.26
PDX1P52945 RNU6ATAC23P-201ENST00000408448 123 ntBASIC0.95□□□□□ -2.26
PDX1P52945 RNU6-1190P-201ENST00000410811 104 ntBASIC0.95□□□□□ -2.26
PDX1P52945 HMGN1P33-201ENST00000432945 451 ntBASIC0.95□□□□□ -2.26
PDX1P52945 AC107297.1-201ENST00000459991 176 ntBASIC0.95□□□□□ -2.26
PDX1P52945 MIR5000-201ENST00000577717 103 ntBASIC0.95□□□□□ -2.26
PDX1P52945 MIR5197-201ENST00000583721 112 ntBASIC0.95□□□□□ -2.26
PDX1P52945 Z83818.1-201ENST00000603584 150 ntBASIC0.95□□□□□ -2.26
PDX1P52945 RNU6-94P-201ENST00000607728 107 ntBASIC0.95□□□□□ -2.26
PDX1P52945 MIR6779-201ENST00000617283 64 ntBASIC0.95□□□□□ -2.26
PDX1P52945 Y_RNA.75-201ENST00000362927 97 ntBASIC0.94□□□□□ -2.26
PDX1P52945 Y_RNA.410-201ENST00000383992 113 ntBASIC0.94□□□□□ -2.26
PDX1P52945 SNORA70.7-201ENST00000384159 133 ntBASIC0.94□□□□□ -2.26
PDX1P52945 RNU6-342P-201ENST00000384521 104 ntBASIC0.94□□□□□ -2.26
PDX1P52945 Y_RNA.542-201ENST00000384641 111 ntBASIC0.94□□□□□ -2.26
PDX1P52945 MIR532-201ENST00000385025 91 ntBASIC0.94□□□□□ -2.26
PDX1P52945 RNU6-613P-201ENST00000410412 108 ntBASIC0.94□□□□□ -2.26
PDX1P52945 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC0.94□□□□□ -2.26
PDX1P52945 snoU13.16-201ENST00000459350 104 ntBASIC0.94□□□□□ -2.26
PDX1P52945 RNU6-998P-201ENST00000515894 101 ntBASIC0.94□□□□□ -2.26
PDX1P52945 RNU6-1219P-201ENST00000516143 112 ntBASIC0.94□□□□□ -2.26
PDX1P52945 RNU11-2P-201ENST00000516898 142 ntBASIC0.94□□□□□ -2.26
PDX1P52945 AC036111.3-201ENST00000526389 112 ntBASIC0.94□□□□□ -2.26
PDX1P52945 Y_RNA.297-201ENST00000364950 91 ntBASIC0.93□□□□□ -2.26
PDX1P52945 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC0.93□□□□□ -2.26
PDX1P52945 RNU7-73P-201ENST00000458743 63 ntBASIC0.93□□□□□ -2.26
PDX1P52945 MIR2115-201ENST00000516657 100 ntBASIC0.93□□□□□ -2.26
PDX1P52945 MIR378D2-201ENST00000580636 98 ntBASIC0.93□□□□□ -2.26
PDX1P52945 AC141273.2-201ENST00000618989 130 ntBASIC0.93□□□□□ -2.26
PDX1P52945 RNU6-1336P-201ENST00000383886 109 ntBASIC0.92□□□□□ -2.26
PDX1P52945 RNU6-205P-201ENST00000390858 107 ntBASIC0.92□□□□□ -2.26
PDX1P52945 MIR548I3-201ENST00000408378 149 ntBASIC0.92□□□□□ -2.26
PDX1P52945 AC006461.1-201ENST00000412637 326 ntBASIC0.92□□□□□ -2.26
PDX1P52945 AL035398.1-201ENST00000430869 322 ntBASIC0.92□□□□□ -2.26
PDX1P52945 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC0.92□□□□□ -2.26
PDX1P52945 RNU2-11P-201ENST00000459191 187 ntBASIC0.92□□□□□ -2.26
PDX1P52945 RNU7-96P-201ENST00000459535 64 ntBASIC0.92□□□□□ -2.26
PDX1P52945 SNORD116-25-201ENST00000516517 92 ntBASIC0.92□□□□□ -2.26
PDX1P52945 MRPS18CP4-201ENST00000535821 231 ntBASIC0.92□□□□□ -2.26
PDX1P52945 AC103810.9-201ENST00000606688 112 ntBASIC0.92□□□□□ -2.26
PDX1P52945 AC106800.4-201ENST00000614905 153 ntBASIC0.92□□□□□ -2.26
PDX1P52945 MIR342-201ENST00000362212 99 ntBASIC0.91□□□□□ -2.26
PDX1P52945 Y_RNA.233-201ENST00000364407 101 ntBASIC0.91□□□□□ -2.26
PDX1P52945 RNU6-396P-201ENST00000365369 105 ntBASIC0.91□□□□□ -2.26
PDX1P52945 Y_RNA.476-201ENST00000384347 108 ntBASIC0.91□□□□□ -2.26
PDX1P52945 SNORA2B-201ENST00000384583 137 ntBASIC0.91□□□□□ -2.26
PDX1P52945 SEPT7P4-201ENST00000437076 306 ntBASIC0.91□□□□□ -2.26
PDX1P52945 RNU6-138P-201ENST00000515952 107 ntBASIC0.91□□□□□ -2.26
PDX1P52945 RNU7-53P-201ENST00000516705 60 ntBASIC0.91□□□□□ -2.26
PDX1P52945 CYP3A137P-201ENST00000562436 69 ntBASIC0.91□□□□□ -2.26
PDX1P52945 HSPE1P19-201ENST00000603327 295 ntBASIC0.91□□□□□ -2.26
PDX1P52945 AL020996.3-201ENST00000606617 222 ntBASIC0.91□□□□□ -2.26
PDX1P52945 MIR6857-201ENST00000613267 93 ntBASIC0.91□□□□□ -2.26
PDX1P52945 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC0.9□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 168.1 ms