Protein–RNA interactions for Protein: P50479

PDLIM4, PDZ and LIM domain protein 4, humanhuman

Predictions only

Length 330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM4P50479 ICE2P2-201ENST00000483823 2787 ntBASIC1.42□□□□□ -2.18
PDLIM4P50479 Y_RNA.4-201ENST00000362333 112 ntBASIC1.41□□□□□ -2.18
PDLIM4P50479 Y_RNA.164-201ENST00000363709 102 ntBASIC1.41□□□□□ -2.18
PDLIM4P50479 RNU1-133P-201ENST00000364867 167 ntBASIC1.41□□□□□ -2.18
PDLIM4P50479 SNORA70.7-201ENST00000384159 133 ntBASIC1.41□□□□□ -2.18
PDLIM4P50479 Y_RNA.494-201ENST00000384432 111 ntBASIC1.41□□□□□ -2.18
PDLIM4P50479 BTF3P4-201ENST00000418852 495 ntBASIC1.41□□□□□ -2.18
PDLIM4P50479 RNU1-98P-201ENST00000458992 160 ntBASIC1.41□□□□□ -2.18
PDLIM4P50479 RNU7-107P-201ENST00000459121 61 ntBASIC1.41□□□□□ -2.18
PDLIM4P50479 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC1.41□□□□□ -2.18
PDLIM4P50479 RN7SKP19-201ENST00000516016 252 ntBASIC1.41□□□□□ -2.18
PDLIM4P50479 RNU6-917P-201ENST00000516294 104 ntBASIC1.41□□□□□ -2.18
PDLIM4P50479 RNU7-43P-201ENST00000516554 64 ntBASIC1.41□□□□□ -2.18
PDLIM4P50479 RNU7-181P-201ENST00000517234 74 ntBASIC1.41□□□□□ -2.18
PDLIM4P50479 SUMO2P16-201ENST00000519475 264 ntBASIC1.41□□□□□ -2.18
PDLIM4P50479 AC090821.2-201ENST00000523552 176 ntBASIC1.41□□□□□ -2.18
PDLIM4P50479 MIR3198-2-201ENST00000577868 80 ntBASIC1.41□□□□□ -2.18
PDLIM4P50479 MIR548AR-201ENST00000582191 57 ntBASIC1.41□□□□□ -2.18
PDLIM4P50479 AC091932.4-201ENST00000623386 200 ntBASIC1.41□□□□□ -2.18
PDLIM4P50479 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC1.41□□□□□ -2.18
PDLIM4P50479 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC1.4□□□□□ -2.19
PDLIM4P50479 SNORD58C-201ENST00000365223 64 ntBASIC1.4□□□□□ -2.19
PDLIM4P50479 RNY1P6-201ENST00000384193 109 ntBASIC1.4□□□□□ -2.19
PDLIM4P50479 RNU6-1067P-201ENST00000384752 107 ntBASIC1.4□□□□□ -2.19
PDLIM4P50479 RNA5SP136-201ENST00000410906 107 ntBASIC1.4□□□□□ -2.19
PDLIM4P50479 RNU7-73P-201ENST00000458743 63 ntBASIC1.4□□□□□ -2.19
PDLIM4P50479 RNU6-772P-201ENST00000516042 105 ntBASIC1.4□□□□□ -2.19
PDLIM4P50479 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC1.4□□□□□ -2.19
PDLIM4P50479 FAM106DP-201ENST00000586416 501 ntBASIC1.4□□□□□ -2.19
PDLIM4P50479 AL359881.1-201ENST00000602916 267 ntBASIC1.4□□□□□ -2.19
PDLIM4P50479 AL513534.2-201ENST00000603836 250 ntBASIC1.4□□□□□ -2.19
PDLIM4P50479 AC108081.1-201ENST00000604358 221 ntBASIC1.4□□□□□ -2.19
PDLIM4P50479 AL512598.1-201ENST00000610158 273 ntBASIC1.4□□□□□ -2.19
PDLIM4P50479 U6.95-201ENST00000636931 70 ntBASIC1.4□□□□□ -2.19
PDLIM4P50479 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC1.39□□□□□ -2.19
PDLIM4P50479 MIR302D-201ENST00000362275 68 ntBASIC1.39□□□□□ -2.19
PDLIM4P50479 MIR337-201ENST00000362281 93 ntBASIC1.39□□□□□ -2.19
PDLIM4P50479 RNU6-235P-201ENST00000362644 107 ntBASIC1.39□□□□□ -2.19
PDLIM4P50479 RNU6-1290P-201ENST00000362957 109 ntBASIC1.39□□□□□ -2.19
PDLIM4P50479 RNA5SP363-201ENST00000365072 115 ntBASIC1.39□□□□□ -2.19
PDLIM4P50479 Y_RNA.353-201ENST00000365440 108 ntBASIC1.39□□□□□ -2.19
PDLIM4P50479 MIR513A1-201ENST00000385138 129 ntBASIC1.39□□□□□ -2.19
PDLIM4P50479 RNU6ATAC3P-201ENST00000387974 126 ntBASIC1.39□□□□□ -2.19
PDLIM4P50479 RNU4-62P-201ENST00000410125 130 ntBASIC1.39□□□□□ -2.19
PDLIM4P50479 AL035398.1-201ENST00000430869 322 ntBASIC1.39□□□□□ -2.19
PDLIM4P50479 RPS29P29-201ENST00000456396 171 ntBASIC1.39□□□□□ -2.19
PDLIM4P50479 RNU6-322P-201ENST00000516010 103 ntBASIC1.39□□□□□ -2.19
PDLIM4P50479 SNORA31.4-201ENST00000516049 129 ntBASIC1.39□□□□□ -2.19
PDLIM4P50479 RNU7-70P-201ENST00000516941 66 ntBASIC1.39□□□□□ -2.19
PDLIM4P50479 IGKV1-22-201ENST00000524313 326 ntBASIC1.39□□□□□ -2.19
PDLIM4P50479 DLEU2_5.2-201ENST00000610606 84 ntBASIC1.39□□□□□ -2.19
PDLIM4P50479 RNA5SP259-201ENST00000365541 109 ntBASIC1.38□□□□□ -2.19
PDLIM4P50479 MIR30A-201ENST00000385092 71 ntBASIC1.38□□□□□ -2.19
PDLIM4P50479 RNU6-735P-201ENST00000410612 107 ntBASIC1.38□□□□□ -2.19
PDLIM4P50479 snoU13.9-201ENST00000458927 103 ntBASIC1.38□□□□□ -2.19
PDLIM4P50479 RNU7-53P-201ENST00000516705 60 ntBASIC1.38□□□□□ -2.19
PDLIM4P50479 DNAJC19P9-201ENST00000555084 351 ntBASIC1.38□□□□□ -2.19
PDLIM4P50479 MIR4303-201ENST00000581299 66 ntBASIC1.38□□□□□ -2.19
PDLIM4P50479 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC1.38□□□□□ -2.19
PDLIM4P50479 AL137067.1-201ENST00000615933 120 ntBASIC1.38□□□□□ -2.19
PDLIM4P50479 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC1.38□□□□□ -2.19
PDLIM4P50479 Y_RNA.346-201ENST00000365385 112 ntBASIC1.37□□□□□ -2.19
PDLIM4P50479 RNU6-1319P-201ENST00000390855 104 ntBASIC1.37□□□□□ -2.19
PDLIM4P50479 RNU6-747P-201ENST00000390928 104 ntBASIC1.37□□□□□ -2.19
PDLIM4P50479 SNORD28B-201ENST00000390993 75 ntBASIC1.37□□□□□ -2.19
PDLIM4P50479 RNU6-241P-201ENST00000391148 104 ntBASIC1.37□□□□□ -2.19
PDLIM4P50479 RNU6-177P-201ENST00000411257 104 ntBASIC1.37□□□□□ -2.19
PDLIM4P50479 AP1B1P2-201ENST00000416196 106 ntBASIC1.37□□□□□ -2.19
PDLIM4P50479 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC1.37□□□□□ -2.19
PDLIM4P50479 AC133485.4-201ENST00000561835 220 ntBASIC1.37□□□□□ -2.19
PDLIM4P50479 AC138907.4-201ENST00000570107 226 ntBASIC1.37□□□□□ -2.19
PDLIM4P50479 AC106754.2-201ENST00000623006 233 ntBASIC1.37□□□□□ -2.19
PDLIM4P50479 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC1.37□□□□□ -2.19
PDLIM4P50479 SNORD33-201ENST00000362761 85 ntBASIC1.36□□□□□ -2.19
PDLIM4P50479 Y_RNA.366-201ENST00000365540 102 ntBASIC1.36□□□□□ -2.19
PDLIM4P50479 Y_RNA.430-201ENST00000384081 110 ntBASIC1.36□□□□□ -2.19
PDLIM4P50479 SNORA67.6-201ENST00000391093 99 ntBASIC1.36□□□□□ -2.19
PDLIM4P50479 AL451046.2-201ENST00000403074 277 ntBASIC1.36□□□□□ -2.19
PDLIM4P50479 RNA5SP261-201ENST00000410536 106 ntBASIC1.36□□□□□ -2.19
PDLIM4P50479 RNA5SP247-201ENST00000411181 105 ntBASIC1.36□□□□□ -2.19
PDLIM4P50479 RNU6-893P-201ENST00000458841 100 ntBASIC1.36□□□□□ -2.19
PDLIM4P50479 snoU13.16-201ENST00000459350 104 ntBASIC1.36□□□□□ -2.19
PDLIM4P50479 COX6CP6-201ENST00000490840 228 ntBASIC1.36□□□□□ -2.19
PDLIM4P50479 AC103879.1-201ENST00000503093 255 ntTSL 2 BASIC1.36□□□□□ -2.19
PDLIM4P50479 RNU6-781P-201ENST00000516377 101 ntBASIC1.36□□□□□ -2.19
PDLIM4P50479 MIR4764-201ENST00000580680 88 ntBASIC1.36□□□□□ -2.19
PDLIM4P50479 MIR4781-201ENST00000585250 76 ntBASIC1.36□□□□□ -2.19
PDLIM4P50479 MIR4791-201ENST00000607666 84 ntBASIC1.36□□□□□ -2.19
PDLIM4P50479 AC243994.1-201ENST00000618627 109 ntBASIC1.36□□□□□ -2.19
PDLIM4P50479 RNU6-690P-201ENST00000365242 106 ntBASIC1.35□□□□□ -2.19
PDLIM4P50479 Y_RNA.525-201ENST00000384570 113 ntBASIC1.35□□□□□ -2.19
PDLIM4P50479 SNORD41-201ENST00000386967 70 ntBASIC1.35□□□□□ -2.19
PDLIM4P50479 SNORA26.6-201ENST00000391256 115 ntBASIC1.35□□□□□ -2.19
PDLIM4P50479 Y_RNA.630-201ENST00000411370 108 ntBASIC1.35□□□□□ -2.19
PDLIM4P50479 RNU2-11P-201ENST00000459191 187 ntBASIC1.35□□□□□ -2.19
PDLIM4P50479 RNU6-240P-201ENST00000516098 97 ntBASIC1.35□□□□□ -2.19
PDLIM4P50479 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.35□□□□□ -2.19
PDLIM4P50479 AL357312.1-201ENST00000603879 298 ntBASIC1.35□□□□□ -2.19
PDLIM4P50479 AL359821.1-201ENST00000605519 182 ntBASIC1.35□□□□□ -2.19
PDLIM4P50479 BX248123.2-201ENST00000606318 124 ntBASIC1.35□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 118.2 ms