Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 RNU1-41P-201ENST00000516161 162 ntBASIC2.26□□□□□ -2.05
LIG3P49916 RNU1-48P-201ENST00000516400 162 ntBASIC2.26□□□□□ -2.05
LIG3P49916 RNU7-6P-201ENST00000516845 62 ntBASIC2.26□□□□□ -2.05
LIG3P49916 MIR4299-201ENST00000577899 72 ntBASIC2.26□□□□□ -2.05
LIG3P49916 MIR6841-201ENST00000637129 72 ntBASIC2.26□□□□□ -2.05
LIG3P49916 MIR221-201ENST00000385135 110 ntBASIC2.25□□□□□ -2.05
LIG3P49916 RNU6ATAC37P-201ENST00000408328 131 ntBASIC2.25□□□□□ -2.05
LIG3P49916 RN7SKP223-201ENST00000410582 62 ntBASIC2.25□□□□□ -2.05
LIG3P49916 RNU6-1190P-201ENST00000410811 104 ntBASIC2.25□□□□□ -2.05
LIG3P49916 RPL39P34-201ENST00000477141 156 ntBASIC2.25□□□□□ -2.05
LIG3P49916 MIR8074-201ENST00000615081 81 ntBASIC2.25□□□□□ -2.05
LIG3P49916 MIR6873-201ENST00000622788 63 ntBASIC2.25□□□□□ -2.05
LIG3P49916 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC2.25□□□□□ -2.05
LIG3P49916 Y_RNA.171-201ENST00000363760 102 ntBASIC2.24□□□□□ -2.05
LIG3P49916 SNORA1.1-201ENST00000364671 133 ntBASIC2.24□□□□□ -2.05
LIG3P49916 RNA5SP160-201ENST00000364866 120 ntBASIC2.24□□□□□ -2.05
LIG3P49916 Y_RNA.344-201ENST00000365381 112 ntBASIC2.24□□□□□ -2.05
LIG3P49916 MIR17-201ENST00000385012 84 ntBASIC2.24□□□□□ -2.05
LIG3P49916 MIR1302-5-201ENST00000408164 150 ntBASIC2.24□□□□□ -2.05
LIG3P49916 RPS3AP1-201ENST00000413190 320 ntBASIC2.24□□□□□ -2.05
LIG3P49916 AC113410.1-201ENST00000505029 247 ntBASIC2.24□□□□□ -2.05
LIG3P49916 RNU1-40P-201ENST00000516816 164 ntBASIC2.24□□□□□ -2.05
LIG3P49916 RNU1-97P-201ENST00000516872 164 ntBASIC2.24□□□□□ -2.05
LIG3P49916 MIR1273D-201ENST00000577266 86 ntBASIC2.24□□□□□ -2.05
LIG3P49916 TTK-202ENST00000369798 3010 ntAPPRIS P3 TSL 1 (best) BASIC2.23□□□□□ -2.05
LIG3P49916 MIR450A1-201ENST00000362262 91 ntBASIC2.23□□□□□ -2.05
LIG3P49916 Y_RNA.163-201ENST00000363702 113 ntBASIC2.23□□□□□ -2.05
LIG3P49916 Y_RNA.309-201ENST00000365046 111 ntBASIC2.23□□□□□ -2.05
LIG3P49916 Y_RNA.323-201ENST00000365157 109 ntBASIC2.23□□□□□ -2.05
LIG3P49916 RNU6-1014P-201ENST00000383940 103 ntBASIC2.23□□□□□ -2.05
LIG3P49916 RNU6-554P-201ENST00000410466 106 ntBASIC2.23□□□□□ -2.05
LIG3P49916 SNORD111.1-201ENST00000516421 86 ntBASIC2.23□□□□□ -2.05
LIG3P49916 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC2.22□□□□□ -2.05
LIG3P49916 RNU4-69P-201ENST00000410677 143 ntBASIC2.22□□□□□ -2.05
LIG3P49916 HMGN1P33-201ENST00000432945 451 ntBASIC2.22□□□□□ -2.05
LIG3P49916 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC2.22□□□□□ -2.05
LIG3P49916 AC025033.1-201ENST00000463883 194 ntBASIC2.22□□□□□ -2.05
LIG3P49916 RNU6-1258P-201ENST00000516911 111 ntBASIC2.22□□□□□ -2.05
LIG3P49916 AC015688.6-201ENST00000577737 104 ntBASIC2.22□□□□□ -2.05
LIG3P49916 SNORA77B-201ENST00000578179 125 ntBASIC2.22□□□□□ -2.05
LIG3P49916 MIR3935-201ENST00000583472 104 ntBASIC2.22□□□□□ -2.05
LIG3P49916 AL513534.2-201ENST00000603836 250 ntBASIC2.22□□□□□ -2.05
LIG3P49916 AL357312.1-201ENST00000603879 298 ntBASIC2.22□□□□□ -2.05
LIG3P49916 RNU6-94P-201ENST00000607728 107 ntBASIC2.22□□□□□ -2.05
LIG3P49916 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC2.22□□□□□ -2.05
LIG3P49916 MIR4251-201ENST00000635819 61 ntBASIC2.22□□□□□ -2.05
LIG3P49916 SNORD115-2-201ENST00000362842 82 ntBASIC2.21□□□□□ -2.06
LIG3P49916 SNORD115-20-201ENST00000365099 82 ntBASIC2.21□□□□□ -2.06
LIG3P49916 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC2.21□□□□□ -2.06
LIG3P49916 RNA5SP33-201ENST00000516687 98 ntBASIC2.21□□□□□ -2.06
LIG3P49916 RNU6-922P-201ENST00000516753 99 ntBASIC2.21□□□□□ -2.06
LIG3P49916 AC068339.1-201ENST00000526965 141 ntBASIC2.21□□□□□ -2.06
LIG3P49916 MIR5002-201ENST00000584713 97 ntBASIC2.21□□□□□ -2.06
LIG3P49916 MIR8055-201ENST00000610739 97 ntBASIC2.21□□□□□ -2.06
LIG3P49916 ZNRD1-AS1_3.8-201ENST00000611686 104 ntBASIC2.21□□□□□ -2.06
LIG3P49916 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC2.21□□□□□ -2.06
LIG3P49916 U8.6-201ENST00000364939 135 ntBASIC2.2□□□□□ -2.06
LIG3P49916 Y_RNA.354-201ENST00000365448 111 ntBASIC2.2□□□□□ -2.06
LIG3P49916 RNU6-32P-201ENST00000383948 107 ntBASIC2.2□□□□□ -2.06
LIG3P49916 RNU6-13P-201ENST00000384248 107 ntBASIC2.2□□□□□ -2.06
LIG3P49916 RNU6-12P-201ENST00000384604 107 ntBASIC2.2□□□□□ -2.06
LIG3P49916 RNU6-41P-201ENST00000384741 107 ntBASIC2.2□□□□□ -2.06
LIG3P49916 RPS27P21-201ENST00000486977 252 ntBASIC2.2□□□□□ -2.06
LIG3P49916 MIR5009-201ENST00000578736 100 ntBASIC2.2□□□□□ -2.06
LIG3P49916 MIR4648-201ENST00000580107 72 ntBASIC2.2□□□□□ -2.06
LIG3P49916 AL162726.3-218ENST00000636401 95 ntBASIC2.2□□□□□ -2.06
LIG3P49916 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC2.2□□□□□ -2.06
LIG3P49916 RNA5SP48-201ENST00000363969 126 ntBASIC2.19□□□□□ -2.06
LIG3P49916 Y_RNA.470-201ENST00000384307 117 ntBASIC2.19□□□□□ -2.06
LIG3P49916 SNORD41-201ENST00000386967 70 ntBASIC2.19□□□□□ -2.06
LIG3P49916 SNORD77B-201ENST00000391112 67 ntBASIC2.19□□□□□ -2.06
LIG3P49916 MIR1912-201ENST00000410389 80 ntBASIC2.19□□□□□ -2.06
LIG3P49916 RNU7-41P-201ENST00000515917 61 ntBASIC2.19□□□□□ -2.06
LIG3P49916 RNA5SP200-201ENST00000516360 103 ntBASIC2.19□□□□□ -2.06
LIG3P49916 MIR514B-201ENST00000516774 80 ntBASIC2.19□□□□□ -2.06
LIG3P49916 CYP3A52P-201ENST00000563326 91 ntBASIC2.19□□□□□ -2.06
LIG3P49916 MIR3124-201ENST00000582636 67 ntBASIC2.19□□□□□ -2.06
LIG3P49916 AC104984.5-201ENST00000586878 94 ntBASIC2.19□□□□□ -2.06
LIG3P49916 AC087741.2-201ENST00000619415 172 ntBASIC2.19□□□□□ -2.06
LIG3P49916 MIR6132-201ENST00000622083 109 ntBASIC2.19□□□□□ -2.06
LIG3P49916 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC2.19□□□□□ -2.06
LIG3P49916 Z97988.1-201ENST00000637697 135 ntBASIC2.19□□□□□ -2.06
LIG3P49916 WWP1P1-201ENST00000466609 2769 ntBASIC2.19□□□□□ -2.06
LIG3P49916 RNU6-766P-201ENST00000362478 107 ntBASIC2.18□□□□□ -2.06
LIG3P49916 SNORD115-19-201ENST00000363098 82 ntBASIC2.18□□□□□ -2.06
LIG3P49916 SNORD115-18-201ENST00000363293 82 ntBASIC2.18□□□□□ -2.06
LIG3P49916 SNORD115-17-201ENST00000364612 82 ntBASIC2.18□□□□□ -2.06
LIG3P49916 RNU6-756P-201ENST00000383997 107 ntBASIC2.18□□□□□ -2.06
LIG3P49916 AL356379.1-201ENST00000414105 126 ntBASIC2.18□□□□□ -2.06
LIG3P49916 RPL39P25-201ENST00000449384 154 ntBASIC2.18□□□□□ -2.06
LIG3P49916 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC2.18□□□□□ -2.06
LIG3P49916 RN7SL274P-201ENST00000492268 272 ntBASIC2.18□□□□□ -2.06
LIG3P49916 RNU6-168P-201ENST00000516189 101 ntBASIC2.18□□□□□ -2.06
LIG3P49916 SNORA44.1-201ENST00000517031 108 ntBASIC2.18□□□□□ -2.06
LIG3P49916 MIR548AE2-201ENST00000583456 67 ntBASIC2.18□□□□□ -2.06
LIG3P49916 FAS-AS1.2-201ENST00000620386 170 ntBASIC2.18□□□□□ -2.06
LIG3P49916 SNORA51.5-201ENST00000384126 131 ntBASIC2.17□□□□□ -2.06
LIG3P49916 RNU6-1113P-201ENST00000384348 107 ntBASIC2.17□□□□□ -2.06
LIG3P49916 Y_RNA.495-201ENST00000384435 112 ntBASIC2.17□□□□□ -2.06
LIG3P49916 SNORA64-201ENST00000384674 134 ntBASIC2.17□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 105.5 ms