Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 MIR513C-201ENST00000401352 84 ntBASIC1.15□□□□□ -2.23
HOXA1P49639 MIR1185-1-201ENST00000408598 86 ntBASIC1.15□□□□□ -2.23
HOXA1P49639 AL035398.1-201ENST00000430869 322 ntBASIC1.15□□□□□ -2.23
HOXA1P49639 snoU13.23-201ENST00000458863 104 ntBASIC1.15□□□□□ -2.23
HOXA1P49639 RNA5SP236-201ENST00000516169 116 ntBASIC1.15□□□□□ -2.23
HOXA1P49639 AP000942.3-201ENST00000603702 160 ntBASIC1.15□□□□□ -2.23
HOXA1P49639 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC1.15□□□□□ -2.23
HOXA1P49639 MIR6715A-201ENST00000615929 79 ntBASIC1.15□□□□□ -2.23
HOXA1P49639 MIR1289-2-201ENST00000408360 111 ntBASIC1.14□□□□□ -2.23
HOXA1P49639 RNA5SP95-201ENST00000410319 137 ntBASIC1.14□□□□□ -2.23
HOXA1P49639 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC1.13□□□□□ -2.23
HOXA1P49639 MIR103A2-201ENST00000362154 78 ntBASIC1.13□□□□□ -2.23
HOXA1P49639 MIR302B-201ENST00000362188 73 ntBASIC1.13□□□□□ -2.23
HOXA1P49639 RNA5SP327-201ENST00000362494 101 ntBASIC1.13□□□□□ -2.23
HOXA1P49639 RNU6-654P-201ENST00000364373 107 ntBASIC1.13□□□□□ -2.23
HOXA1P49639 RNU1-133P-201ENST00000364867 167 ntBASIC1.13□□□□□ -2.23
HOXA1P49639 RNU6-915P-201ENST00000364943 103 ntBASIC1.13□□□□□ -2.23
HOXA1P49639 MIR758-201ENST00000390227 88 ntBASIC1.13□□□□□ -2.23
HOXA1P49639 AC245047.7-201ENST00000440265 293 ntBASIC1.13□□□□□ -2.23
HOXA1P49639 Y_RNA.651-201ENST00000459380 103 ntBASIC1.13□□□□□ -2.23
HOXA1P49639 RNU7-96P-201ENST00000459535 64 ntBASIC1.13□□□□□ -2.23
HOXA1P49639 RNA5SP264-201ENST00000363115 107 ntBASIC1.12□□□□□ -2.23
HOXA1P49639 RNA5SP48-201ENST00000363969 126 ntBASIC1.12□□□□□ -2.23
HOXA1P49639 RNU6-1067P-201ENST00000384752 107 ntBASIC1.12□□□□□ -2.23
HOXA1P49639 RNU6-910P-201ENST00000390844 107 ntBASIC1.12□□□□□ -2.23
HOXA1P49639 MRPL35P3-201ENST00000421557 364 ntBASIC1.12□□□□□ -2.23
HOXA1P49639 AC013248.1-201ENST00000455092 232 ntTSL 3 BASIC1.12□□□□□ -2.23
HOXA1P49639 Y_RNA.690-201ENST00000516603 95 ntBASIC1.12□□□□□ -2.23
HOXA1P49639 RNU7-70P-201ENST00000516941 66 ntBASIC1.12□□□□□ -2.23
HOXA1P49639 PRELID3BP2-201ENST00000605362 201 ntBASIC1.12□□□□□ -2.23
HOXA1P49639 MIR8065-201ENST00000620577 100 ntBASIC1.12□□□□□ -2.23
HOXA1P49639 SNORA70.7-201ENST00000384159 133 ntBASIC1.11□□□□□ -2.23
HOXA1P49639 SNORA75.2-201ENST00000391138 150 ntBASIC1.11□□□□□ -2.23
HOXA1P49639 SNORA75.3-201ENST00000391231 150 ntBASIC1.11□□□□□ -2.23
HOXA1P49639 RNU6ATAC8P-201ENST00000408460 126 ntBASIC1.11□□□□□ -2.23
HOXA1P49639 AL591806.2-201ENST00000433122 173 ntBASIC1.11□□□□□ -2.23
HOXA1P49639 RNU7-80P-201ENST00000459562 61 ntBASIC1.11□□□□□ -2.23
HOXA1P49639 AL133373.1-201ENST00000497098 94 ntBASIC1.11□□□□□ -2.23
HOXA1P49639 AC108210.2-201ENST00000503681 201 ntBASIC1.11□□□□□ -2.23
HOXA1P49639 RNU7-53P-201ENST00000516705 60 ntBASIC1.11□□□□□ -2.23
HOXA1P49639 Y_RNA.703-201ENST00000516846 111 ntBASIC1.11□□□□□ -2.23
HOXA1P49639 AP003716.2-201ENST00000528260 108 ntBASIC1.11□□□□□ -2.23
HOXA1P49639 AC108081.1-201ENST00000604358 221 ntBASIC1.11□□□□□ -2.23
HOXA1P49639 AL022345.2-201ENST00000606307 135 ntBASIC1.11□□□□□ -2.23
HOXA1P49639 AL020996.3-201ENST00000606617 222 ntBASIC1.11□□□□□ -2.23
HOXA1P49639 RNU6-60P-201ENST00000364792 103 ntBASIC1.1□□□□□ -2.23
HOXA1P49639 Y_RNA.330-201ENST00000365230 109 ntBASIC1.1□□□□□ -2.23
HOXA1P49639 RNY1P5-201ENST00000383890 115 ntBASIC1.1□□□□□ -2.23
HOXA1P49639 SNORA26.6-201ENST00000391256 115 ntBASIC1.1□□□□□ -2.23
HOXA1P49639 MIR548M-201ENST00000408260 86 ntBASIC1.1□□□□□ -2.23
HOXA1P49639 RNU6-257P-201ENST00000410238 98 ntBASIC1.1□□□□□ -2.23
HOXA1P49639 RNU6-1054P-201ENST00000411293 104 ntBASIC1.1□□□□□ -2.23
HOXA1P49639 RNU7-73P-201ENST00000458743 63 ntBASIC1.1□□□□□ -2.23
HOXA1P49639 snoU13.16-201ENST00000459350 104 ntBASIC1.1□□□□□ -2.23
HOXA1P49639 RNU6-240P-201ENST00000516098 97 ntBASIC1.1□□□□□ -2.23
HOXA1P49639 DLEU2_5.2-201ENST00000610606 84 ntBASIC1.1□□□□□ -2.23
HOXA1P49639 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.1□□□□□ -2.23
HOXA1P49639 MIR6516-201ENST00000630554 81 ntBASIC1.1□□□□□ -2.23
HOXA1P49639 AC010332.2-201ENST00000613083 1904 ntBASIC1.09□□□□□ -2.23
HOXA1P49639 Y_RNA.120-201ENST00000363304 110 ntBASIC1.09□□□□□ -2.23
HOXA1P49639 SNORD18B-201ENST00000365659 72 ntBASIC1.09□□□□□ -2.23
HOXA1P49639 RNU6-746P-201ENST00000384112 109 ntBASIC1.09□□□□□ -2.23
HOXA1P49639 Y_RNA.568-201ENST00000384742 113 ntBASIC1.09□□□□□ -2.23
HOXA1P49639 RNU6-205P-201ENST00000390858 107 ntBASIC1.09□□□□□ -2.23
HOXA1P49639 MTND4LP9-201ENST00000427694 174 ntBASIC1.09□□□□□ -2.23
HOXA1P49639 AL392103.1-201ENST00000447000 198 ntBASIC1.09□□□□□ -2.23
HOXA1P49639 SNORD13-201ENST00000459299 104 ntBASIC1.09□□□□□ -2.23
HOXA1P49639 RNU1-92P-201ENST00000517017 135 ntBASIC1.09□□□□□ -2.23
HOXA1P49639 AP001328.1-201ENST00000528550 176 ntBASIC1.09□□□□□ -2.23
HOXA1P49639 AC068338.1-201ENST00000565567 176 ntBASIC1.09□□□□□ -2.23
HOXA1P49639 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC1.09□□□□□ -2.23
HOXA1P49639 MIR8055-201ENST00000610739 97 ntBASIC1.09□□□□□ -2.23
HOXA1P49639 RNU6-349P-201ENST00000362402 107 ntBASIC1.08□□□□□ -2.24
HOXA1P49639 SNORA22-201ENST00000383907 134 ntBASIC1.08□□□□□ -2.24
HOXA1P49639 Y_RNA.454-201ENST00000384224 113 ntBASIC1.08□□□□□ -2.24
HOXA1P49639 SNORA22C-201ENST00000384614 134 ntBASIC1.08□□□□□ -2.24
HOXA1P49639 RNU6-482P-201ENST00000391068 107 ntBASIC1.08□□□□□ -2.24
HOXA1P49639 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC1.08□□□□□ -2.24
HOXA1P49639 AC015712.3-201ENST00000559380 164 ntBASIC1.08□□□□□ -2.24
HOXA1P49639 AL512598.1-201ENST00000610158 273 ntBASIC1.08□□□□□ -2.24
HOXA1P49639 AL353997.5-201ENST00000618886 171 ntBASIC1.08□□□□□ -2.24
HOXA1P49639 MIR6717-201ENST00000622747 73 ntBASIC1.08□□□□□ -2.24
HOXA1P49639 AC021613.1-201ENST00000623880 111 ntBASIC1.08□□□□□ -2.24
HOXA1P49639 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.07□□□□□ -2.24
HOXA1P49639 SNORA1.1-201ENST00000364671 133 ntBASIC1.07□□□□□ -2.24
HOXA1P49639 RNU6-690P-201ENST00000365242 106 ntBASIC1.07□□□□□ -2.24
HOXA1P49639 Y_RNA.343-201ENST00000365354 112 ntBASIC1.07□□□□□ -2.24
HOXA1P49639 Y_RNA.366-201ENST00000365540 102 ntBASIC1.07□□□□□ -2.24
HOXA1P49639 RNY1P6-201ENST00000384193 109 ntBASIC1.07□□□□□ -2.24
HOXA1P49639 SNORD12C-201ENST00000386307 89 ntBASIC1.07□□□□□ -2.24
HOXA1P49639 AL603914.1-201ENST00000401964 204 ntBASIC1.07□□□□□ -2.24
HOXA1P49639 RNU6-602P-201ENST00000411155 105 ntBASIC1.07□□□□□ -2.24
HOXA1P49639 AC244023.1-201ENST00000426884 112 ntBASIC1.07□□□□□ -2.24
HOXA1P49639 RNU6-1258P-201ENST00000516911 111 ntBASIC1.07□□□□□ -2.24
HOXA1P49639 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC1.07□□□□□ -2.24
HOXA1P49639 AC019288.1-201ENST00000557918 224 ntBASIC1.07□□□□□ -2.24
HOXA1P49639 AC023827.1-201ENST00000569247 97 ntBASIC1.07□□□□□ -2.24
HOXA1P49639 AC242498.1-201ENST00000604134 111 ntBASIC1.07□□□□□ -2.24
HOXA1P49639 ZNF209P-201ENST00000593450 2304 ntBASIC1.07□□□□□ -2.24
HOXA1P49639 RNU6-235P-201ENST00000362644 107 ntBASIC1.06□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 166.6 ms