Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC0.66□□□□□ -2.3
CDX1P47902 MIR302B-201ENST00000362188 73 ntBASIC0.66□□□□□ -2.3
CDX1P47902 RNU6-1309P-201ENST00000363305 108 ntBASIC0.66□□□□□ -2.3
CDX1P47902 RNU6-694P-201ENST00000364071 147 ntBASIC0.66□□□□□ -2.3
CDX1P47902 Y_RNA.288-201ENST00000364854 92 ntBASIC0.66□□□□□ -2.3
CDX1P47902 RNU4-17P-201ENST00000365598 141 ntBASIC0.66□□□□□ -2.3
CDX1P47902 RNU6-42P-201ENST00000384165 107 ntBASIC0.66□□□□□ -2.3
CDX1P47902 RNU6ATAC6P-201ENST00000408132 126 ntBASIC0.66□□□□□ -2.3
CDX1P47902 snoU13.18-201ENST00000459483 104 ntBASIC0.66□□□□□ -2.3
CDX1P47902 RNU6-351P-201ENST00000516097 100 ntBASIC0.66□□□□□ -2.3
CDX1P47902 MIR4643-201ENST00000577473 78 ntBASIC0.66□□□□□ -2.3
CDX1P47902 MIR7111-201ENST00000619751 72 ntBASIC0.66□□□□□ -2.3
CDX1P47902 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.65□□□□□ -2.3
CDX1P47902 Y_RNA.292-201ENST00000364904 97 ntBASIC0.65□□□□□ -2.31
CDX1P47902 Y_RNA.440-201ENST00000384120 114 ntBASIC0.65□□□□□ -2.31
CDX1P47902 MIR520F-201ENST00000384824 87 ntBASIC0.65□□□□□ -2.31
CDX1P47902 RNU6-381P-201ENST00000391259 108 ntBASIC0.65□□□□□ -2.31
CDX1P47902 AC004941.2-201ENST00000427009 228 ntBASIC0.65□□□□□ -2.31
CDX1P47902 HMGN1P33-201ENST00000432945 451 ntBASIC0.65□□□□□ -2.31
CDX1P47902 RNU6-998P-201ENST00000515894 101 ntBASIC0.65□□□□□ -2.31
CDX1P47902 FAM71BP1-201ENST00000604431 523 ntBASIC0.65□□□□□ -2.31
CDX1P47902 AL442067.1-201ENST00000613261 223 ntBASIC0.65□□□□□ -2.31
CDX1P47902 UGP2-230ENST00000626380 276 ntTSL 5 BASIC0.65□□□□□ -2.31
CDX1P47902 Z97988.1-201ENST00000637697 135 ntBASIC0.65□□□□□ -2.31
CDX1P47902 RNU6-653P-201ENST00000363074 106 ntBASIC0.64□□□□□ -2.31
CDX1P47902 RNU6-103P-201ENST00000363686 107 ntBASIC0.64□□□□□ -2.31
CDX1P47902 Y_RNA.351-201ENST00000365436 96 ntBASIC0.64□□□□□ -2.31
CDX1P47902 SNORA1-201ENST00000384107 130 ntBASIC0.64□□□□□ -2.31
CDX1P47902 Y_RNA.518-201ENST00000384552 113 ntBASIC0.64□□□□□ -2.31
CDX1P47902 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC0.64□□□□□ -2.31
CDX1P47902 MIR548I3-201ENST00000408378 149 ntBASIC0.64□□□□□ -2.31
CDX1P47902 MIR548H3-201ENST00000408771 118 ntBASIC0.64□□□□□ -2.31
CDX1P47902 MIR548J-201ENST00000408833 112 ntBASIC0.64□□□□□ -2.31
CDX1P47902 RNU2-38P-201ENST00000410856 79 ntBASIC0.64□□□□□ -2.31
CDX1P47902 RNA5SP222-201ENST00000411039 105 ntBASIC0.64□□□□□ -2.31
CDX1P47902 AC015818.7-201ENST00000428754 109 ntBASIC0.64□□□□□ -2.31
CDX1P47902 AC087499.7-201ENST00000441958 109 ntBASIC0.64□□□□□ -2.31
CDX1P47902 SNORD127-201ENST00000458892 86 ntBASIC0.64□□□□□ -2.31
CDX1P47902 COX6CP6-201ENST00000490840 228 ntBASIC0.64□□□□□ -2.31
CDX1P47902 RNU6-561P-201ENST00000516222 102 ntBASIC0.64□□□□□ -2.31
CDX1P47902 RNU6-1223P-201ENST00000517124 104 ntBASIC0.64□□□□□ -2.31
CDX1P47902 CYP3A137P-201ENST00000562436 69 ntBASIC0.64□□□□□ -2.31
CDX1P47902 MIR4698-201ENST00000577795 80 ntBASIC0.64□□□□□ -2.31
CDX1P47902 MIR151B-201ENST00000584249 96 ntBASIC0.64□□□□□ -2.31
CDX1P47902 AC097639.2-201ENST00000603159 172 ntBASIC0.64□□□□□ -2.31
CDX1P47902 AC108706.1-201ENST00000611053 297 ntBASIC0.64□□□□□ -2.31
CDX1P47902 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.64□□□□□ -2.31
CDX1P47902 HSBP1P2-201ENST00000299671 229 ntBASIC0.63□□□□□ -2.31
CDX1P47902 Y_RNA.23-201ENST00000362496 106 ntBASIC0.63□□□□□ -2.31
CDX1P47902 MIR588-201ENST00000384900 83 ntBASIC0.63□□□□□ -2.31
CDX1P47902 MIR1302-3-201ENST00000408128 138 ntBASIC0.63□□□□□ -2.31
CDX1P47902 RNU6ATAC20P-201ENST00000408436 127 ntBASIC0.63□□□□□ -2.31
CDX1P47902 AC244098.3-201ENST00000424803 96 ntBASIC0.63□□□□□ -2.31
CDX1P47902 AL358176.2-201ENST00000425769 204 ntBASIC0.63□□□□□ -2.31
CDX1P47902 AL121914.1-201ENST00000450188 156 ntBASIC0.63□□□□□ -2.31
CDX1P47902 MIR3129-201ENST00000581095 76 ntBASIC0.63□□□□□ -2.31
CDX1P47902 AL360085.1-201ENST00000604713 532 ntBASIC0.63□□□□□ -2.31
CDX1P47902 RMST_2.1-201ENST00000617263 136 ntBASIC0.63□□□□□ -2.31
CDX1P47902 Y_RNA.76-201ENST00000362931 109 ntBASIC0.62□□□□□ -2.31
CDX1P47902 RNU6-602P-201ENST00000411155 105 ntBASIC0.62□□□□□ -2.31
CDX1P47902 RNU6-327P-201ENST00000516270 127 ntBASIC0.62□□□□□ -2.31
CDX1P47902 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC0.62□□□□□ -2.31
CDX1P47902 MIR6866-201ENST00000638146 69 ntBASIC0.62□□□□□ -2.31
CDX1P47902 RNU6-369P-201ENST00000362515 102 ntBASIC0.61□□□□□ -2.31
CDX1P47902 Y_RNA.308-201ENST00000365043 101 ntBASIC0.61□□□□□ -2.31
CDX1P47902 Y_RNA.354-201ENST00000365448 111 ntBASIC0.61□□□□□ -2.31
CDX1P47902 SNORA36.2-201ENST00000384004 127 ntBASIC0.61□□□□□ -2.31
CDX1P47902 Y_RNA.542-201ENST00000384641 111 ntBASIC0.61□□□□□ -2.31
CDX1P47902 Y_RNA.556-201ENST00000384677 113 ntBASIC0.61□□□□□ -2.31
CDX1P47902 MIR489-201ENST00000384923 84 ntBASIC0.61□□□□□ -2.31
CDX1P47902 MIR520H-201ENST00000385126 88 ntBASIC0.61□□□□□ -2.31
CDX1P47902 Y_RNA.618-201ENST00000410949 107 ntBASIC0.61□□□□□ -2.31
CDX1P47902 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC0.61□□□□□ -2.31
CDX1P47902 RNU6-1132P-201ENST00000459214 107 ntBASIC0.61□□□□□ -2.31
CDX1P47902 RNU7-80P-201ENST00000459562 61 ntBASIC0.61□□□□□ -2.31
CDX1P47902 MIR4744-201ENST00000581563 82 ntBASIC0.61□□□□□ -2.31
CDX1P47902 MIR4676-201ENST00000583078 72 ntBASIC0.61□□□□□ -2.31
CDX1P47902 DLEU2_5.2-201ENST00000610606 84 ntBASIC0.61□□□□□ -2.31
CDX1P47902 MIR6740-201ENST00000618268 113 ntBASIC0.61□□□□□ -2.31
CDX1P47902 AC010332.2-201ENST00000613083 1904 ntBASIC0.61□□□□□ -2.31
CDX1P47902 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC0.6□□□□□ -2.31
CDX1P47902 Y_RNA.65-201ENST00000362846 100 ntBASIC0.6□□□□□ -2.31
CDX1P47902 SNORD27-201ENST00000363981 72 ntBASIC0.6□□□□□ -2.31
CDX1P47902 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC0.6□□□□□ -2.31
CDX1P47902 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.6□□□□□ -2.31
CDX1P47902 RNA5SP261-201ENST00000410536 106 ntBASIC0.6□□□□□ -2.31
CDX1P47902 RNU6-1190P-201ENST00000410811 104 ntBASIC0.6□□□□□ -2.31
CDX1P47902 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC0.6□□□□□ -2.31
CDX1P47902 MTND5P15-201ENST00000434246 349 ntBASIC0.6□□□□□ -2.31
CDX1P47902 MIR18B-201ENST00000454574 71 ntBASIC0.6□□□□□ -2.31
CDX1P47902 RNY3P16-201ENST00000516338 101 ntBASIC0.6□□□□□ -2.31
CDX1P47902 Y_RNA.454-201ENST00000384224 113 ntBASIC0.59□□□□□ -2.31
CDX1P47902 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.59□□□□□ -2.31
CDX1P47902 RNU6-1165P-201ENST00000410119 107 ntBASIC0.59□□□□□ -2.31
CDX1P47902 snoU13.2-201ENST00000459201 104 ntBASIC0.59□□□□□ -2.31
CDX1P47902 RNU7-70P-201ENST00000516941 66 ntBASIC0.59□□□□□ -2.31
CDX1P47902 MIR5000-201ENST00000577717 103 ntBASIC0.59□□□□□ -2.31
CDX1P47902 MIR4804-201ENST00000581683 73 ntBASIC0.59□□□□□ -2.31
CDX1P47902 AC020891.4-201ENST00000605745 93 ntBASIC0.59□□□□□ -2.31
CDX1P47902 SNORD12C-201ENST00000386307 89 ntBASIC0.58□□□□□ -2.32
Retrieved 100 of 98,524 protein–RNA pairs in 175 ms