Protein–RNA interactions for Protein: P43246

MSH2, DNA mismatch repair protein Msh2, humanhuman

Predictions only

Length 934 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2P43246 AL035398.1-201ENST00000430869 322 ntBASIC0.98□□□□□ -2.25
MSH2P43246 RNU7-96P-201ENST00000459535 64 ntBASIC0.98□□□□□ -2.25
MSH2P43246 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC0.98□□□□□ -2.25
MSH2P43246 SNORD116-25-201ENST00000516517 92 ntBASIC0.98□□□□□ -2.25
MSH2P43246 AC130289.1-201ENST00000577321 73 ntBASIC0.98□□□□□ -2.25
MSH2P43246 AL365205.2-201ENST00000594586 68 ntBASIC0.98□□□□□ -2.25
MSH2P43246 Z83818.1-201ENST00000603584 150 ntBASIC0.98□□□□□ -2.25
MSH2P43246 AC106800.4-201ENST00000614905 153 ntBASIC0.98□□□□□ -2.25
MSH2P43246 MIR376A2-201ENST00000636782 80 ntBASIC0.98□□□□□ -2.25
MSH2P43246 Y_RNA.75-201ENST00000362927 97 ntBASIC0.97□□□□□ -2.25
MSH2P43246 RNU6-1292P-201ENST00000383856 107 ntBASIC0.97□□□□□ -2.25
MSH2P43246 Y_RNA.412-201ENST00000384001 104 ntBASIC0.97□□□□□ -2.25
MSH2P43246 RNU6-643P-201ENST00000384018 107 ntBASIC0.97□□□□□ -2.25
MSH2P43246 MT-TN-201ENST00000387400 73 ntBASIC0.97□□□□□ -2.25
MSH2P43246 AC090844.1-201ENST00000422019 156 ntBASIC0.97□□□□□ -2.25
MSH2P43246 RNU6-998P-201ENST00000515894 101 ntBASIC0.97□□□□□ -2.25
MSH2P43246 RNU6-379P-201ENST00000363813 104 ntBASIC0.96□□□□□ -2.26
MSH2P43246 SNORD113.3-201ENST00000364630 78 ntBASIC0.96□□□□□ -2.26
MSH2P43246 RNU1-36P-201ENST00000365130 165 ntBASIC0.96□□□□□ -2.26
MSH2P43246 RNU6-47P-201ENST00000383866 107 ntBASIC0.96□□□□□ -2.26
MSH2P43246 RNU6-125P-201ENST00000384505 107 ntBASIC0.96□□□□□ -2.26
MSH2P43246 SNORD111-201ENST00000408139 94 ntBASIC0.96□□□□□ -2.26
MSH2P43246 RNA5SP95-201ENST00000410319 137 ntBASIC0.96□□□□□ -2.26
MSH2P43246 RPS3AP1-201ENST00000413190 320 ntBASIC0.96□□□□□ -2.26
MSH2P43246 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC0.96□□□□□ -2.26
MSH2P43246 AL138752.1-201ENST00000452964 351 ntBASIC0.96□□□□□ -2.26
MSH2P43246 MIR5197-201ENST00000583721 112 ntBASIC0.96□□□□□ -2.26
MSH2P43246 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC0.96□□□□□ -2.26
MSH2P43246 MIR8055-201ENST00000610739 97 ntBASIC0.96□□□□□ -2.26
MSH2P43246 AC141273.2-201ENST00000618989 130 ntBASIC0.96□□□□□ -2.26
MSH2P43246 U6.106-201ENST00000636360 105 ntBASIC0.96□□□□□ -2.26
MSH2P43246 RNU6-1020P-201ENST00000363684 107 ntBASIC0.95□□□□□ -2.26
MSH2P43246 SNORA2B-201ENST00000384583 137 ntBASIC0.95□□□□□ -2.26
MSH2P43246 FABP5P4-201ENST00000437203 171 ntBASIC0.95□□□□□ -2.26
MSH2P43246 RNU2-11P-201ENST00000459191 187 ntBASIC0.95□□□□□ -2.26
MSH2P43246 RPL39P28-201ENST00000465655 155 ntBASIC0.95□□□□□ -2.26
MSH2P43246 MRPS18CP4-201ENST00000535821 231 ntBASIC0.95□□□□□ -2.26
MSH2P43246 AC211469.2-201ENST00000605461 205 ntBASIC0.95□□□□□ -2.26
MSH2P43246 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC0.94□□□□□ -2.26
MSH2P43246 MIR377-201ENST00000362145 69 ntBASIC0.94□□□□□ -2.26
MSH2P43246 Y_RNA.168-201ENST00000363740 102 ntBASIC0.94□□□□□ -2.26
MSH2P43246 SNORD114-27-201ENST00000363766 70 ntBASIC0.94□□□□□ -2.26
MSH2P43246 Y_RNA.274-201ENST00000364714 101 ntBASIC0.94□□□□□ -2.26
MSH2P43246 Y_RNA.515-201ENST00000384535 112 ntBASIC0.94□□□□□ -2.26
MSH2P43246 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC0.94□□□□□ -2.26
MSH2P43246 RNA5SP102-201ENST00000516865 106 ntBASIC0.94□□□□□ -2.26
MSH2P43246 AP000753.3-201ENST00000604083 169 ntBASIC0.94□□□□□ -2.26
MSH2P43246 RNU6-94P-201ENST00000607728 107 ntBASIC0.94□□□□□ -2.26
MSH2P43246 Z97988.1-201ENST00000637697 135 ntBASIC0.94□□□□□ -2.26
MSH2P43246 RNU6-580P-201ENST00000365159 107 ntBASIC0.93□□□□□ -2.26
MSH2P43246 Y_RNA.351-201ENST00000365436 96 ntBASIC0.93□□□□□ -2.26
MSH2P43246 Y_RNA.476-201ENST00000384347 108 ntBASIC0.93□□□□□ -2.26
MSH2P43246 MIR548I3-201ENST00000408378 149 ntBASIC0.93□□□□□ -2.26
MSH2P43246 RNU2-64P-201ENST00000411315 191 ntBASIC0.93□□□□□ -2.26
MSH2P43246 AC244023.1-201ENST00000426884 112 ntBASIC0.93□□□□□ -2.26
MSH2P43246 Y_RNA.676-201ENST00000516393 96 ntBASIC0.93□□□□□ -2.26
MSH2P43246 MIR4264-201ENST00000583520 66 ntBASIC0.93□□□□□ -2.26
MSH2P43246 AC242498.1-201ENST00000604134 111 ntBASIC0.93□□□□□ -2.26
MSH2P43246 AC078938.1-201ENST00000620993 318 ntBASIC0.93□□□□□ -2.26
MSH2P43246 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC0.93□□□□□ -2.26
MSH2P43246 MIR342-201ENST00000362212 99 ntBASIC0.92□□□□□ -2.26
MSH2P43246 Y_RNA.552-201ENST00000384665 112 ntBASIC0.92□□□□□ -2.26
MSH2P43246 RNU6ATAC3P-201ENST00000387974 126 ntBASIC0.92□□□□□ -2.26
MSH2P43246 RNU6-205P-201ENST00000390858 107 ntBASIC0.92□□□□□ -2.26
MSH2P43246 AC006461.1-201ENST00000412637 326 ntBASIC0.92□□□□□ -2.26
MSH2P43246 HMGN1P33-201ENST00000432945 451 ntBASIC0.92□□□□□ -2.26
MSH2P43246 PSMC1P5-201ENST00000512850 177 ntBASIC0.92□□□□□ -2.26
MSH2P43246 RNU6-388P-201ENST00000517012 105 ntBASIC0.92□□□□□ -2.26
MSH2P43246 RNU6-389P-201ENST00000517048 105 ntBASIC0.92□□□□□ -2.26
MSH2P43246 MIR4431-201ENST00000579990 94 ntBASIC0.92□□□□□ -2.26
MSH2P43246 MIR8070-201ENST00000616510 88 ntBASIC0.92□□□□□ -2.26
MSH2P43246 Y_RNA.233-201ENST00000364407 101 ntBASIC0.91□□□□□ -2.26
MSH2P43246 SNORA1.1-201ENST00000364671 133 ntBASIC0.91□□□□□ -2.26
MSH2P43246 Y_RNA.297-201ENST00000364950 91 ntBASIC0.91□□□□□ -2.26
MSH2P43246 SNORA25.9-201ENST00000365087 128 ntBASIC0.91□□□□□ -2.26
MSH2P43246 SNORD38B-201ENST00000384690 67 ntBASIC0.91□□□□□ -2.26
MSH2P43246 MIR608-201ENST00000384820 100 ntBASIC0.91□□□□□ -2.26
MSH2P43246 RNU6ATAC23P-201ENST00000408448 123 ntBASIC0.91□□□□□ -2.26
MSH2P43246 RNU6-994P-201ENST00000410507 111 ntBASIC0.91□□□□□ -2.26
MSH2P43246 RNU6-1190P-201ENST00000410811 104 ntBASIC0.91□□□□□ -2.26
MSH2P43246 RNA5SP127-201ENST00000411051 133 ntBASIC0.91□□□□□ -2.26
MSH2P43246 RNU7-80P-201ENST00000459562 61 ntBASIC0.91□□□□□ -2.26
MSH2P43246 RNA5SP255-201ENST00000516370 107 ntBASIC0.91□□□□□ -2.26
MSH2P43246 IGHVIII-67-2-201ENST00000519849 88 ntBASIC0.91□□□□□ -2.26
MSH2P43246 SNORD38B-202ENST00000625943 69 ntBASIC0.91□□□□□ -2.26
MSH2P43246 RNU6-312P-201ENST00000364629 107 ntBASIC0.9□□□□□ -2.27
MSH2P43246 Y_RNA.454-201ENST00000384224 113 ntBASIC0.9□□□□□ -2.27
MSH2P43246 MIR624-201ENST00000385217 97 ntBASIC0.9□□□□□ -2.27
MSH2P43246 SEPT7P4-201ENST00000437076 306 ntBASIC0.9□□□□□ -2.27
MSH2P43246 Y_RNA.644-201ENST00000459006 113 ntBASIC0.9□□□□□ -2.27
MSH2P43246 RNU6-1219P-201ENST00000516143 112 ntBASIC0.9□□□□□ -2.27
MSH2P43246 Y_RNA.674-201ENST00000516362 113 ntBASIC0.9□□□□□ -2.27
MSH2P43246 AC022559.1-201ENST00000520905 205 ntBASIC0.9□□□□□ -2.27
MSH2P43246 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC0.9□□□□□ -2.27
MSH2P43246 AC013244.2-201ENST00000603396 103 ntBASIC0.9□□□□□ -2.27
MSH2P43246 MIR6857-201ENST00000613267 93 ntBASIC0.9□□□□□ -2.27
MSH2P43246 AC091932.4-201ENST00000623386 200 ntBASIC0.9□□□□□ -2.27
MSH2P43246 MIR302B-201ENST00000362188 73 ntBASIC0.89□□□□□ -2.27
MSH2P43246 SNORA25.7-201ENST00000364375 127 ntBASIC0.89□□□□□ -2.27
MSH2P43246 RNU6-602P-201ENST00000411155 105 ntBASIC0.89□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 134.8 ms