Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 SNORD115-29-201ENST00000362834 82 ntBASIC1.07□□□□□ -2.24
HNF4AP41235 SNORD115-9-201ENST00000362912 82 ntBASIC1.07□□□□□ -2.24
HNF4AP41235 SNORD115-21-201ENST00000362963 81 ntBASIC1.07□□□□□ -2.24
HNF4AP41235 SNORD115-14-201ENST00000363090 81 ntBASIC1.07□□□□□ -2.24
HNF4AP41235 SNORD115-13-201ENST00000363358 82 ntBASIC1.07□□□□□ -2.24
HNF4AP41235 SNORD115-41-201ENST00000363608 82 ntBASIC1.07□□□□□ -2.24
HNF4AP41235 SNORD115-11-201ENST00000363616 82 ntBASIC1.07□□□□□ -2.24
HNF4AP41235 SNORD115-5-201ENST00000363633 82 ntBASIC1.07□□□□□ -2.24
HNF4AP41235 SNORD115-39-201ENST00000363694 82 ntBASIC1.07□□□□□ -2.24
HNF4AP41235 Y_RNA.170-201ENST00000363746 110 ntBASIC1.07□□□□□ -2.24
HNF4AP41235 SNORD115-4-201ENST00000363810 82 ntBASIC1.07□□□□□ -2.24
HNF4AP41235 SNORD115-16-201ENST00000363887 82 ntBASIC1.07□□□□□ -2.24
HNF4AP41235 SNORD115-6-201ENST00000363942 82 ntBASIC1.07□□□□□ -2.24
HNF4AP41235 RNU6-151P-201ENST00000364158 107 ntBASIC1.07□□□□□ -2.24
HNF4AP41235 SNORD115-42-201ENST00000364273 82 ntBASIC1.07□□□□□ -2.24
HNF4AP41235 SNORD115-15-201ENST00000364809 81 ntBASIC1.07□□□□□ -2.24
HNF4AP41235 SNORD115-1-201ENST00000364961 82 ntBASIC1.07□□□□□ -2.24
HNF4AP41235 SNORD115-26-201ENST00000365067 82 ntBASIC1.07□□□□□ -2.24
HNF4AP41235 SNORD115-10-201ENST00000365073 81 ntBASIC1.07□□□□□ -2.24
HNF4AP41235 SNORA1.2-201ENST00000365189 134 ntBASIC1.07□□□□□ -2.24
HNF4AP41235 RNU6-53P-201ENST00000365367 106 ntBASIC1.07□□□□□ -2.24
HNF4AP41235 SNORD115-43-201ENST00000365503 82 ntBASIC1.07□□□□□ -2.24
HNF4AP41235 SNORD115-36-201ENST00000365629 82 ntBASIC1.07□□□□□ -2.24
HNF4AP41235 RNU6-449P-201ENST00000383914 107 ntBASIC1.07□□□□□ -2.24
HNF4AP41235 SNORD116-18-201ENST00000383961 92 ntBASIC1.07□□□□□ -2.24
HNF4AP41235 SNORA27-201ENST00000384323 126 ntBASIC1.07□□□□□ -2.24
HNF4AP41235 MIR624-201ENST00000385217 97 ntBASIC1.07□□□□□ -2.24
HNF4AP41235 RNA5SP127-201ENST00000411051 133 ntBASIC1.07□□□□□ -2.24
HNF4AP41235 TRMT112P2-201ENST00000512910 132 ntBASIC1.07□□□□□ -2.24
HNF4AP41235 RNU6-1212P-201ENST00000517023 104 ntBASIC1.07□□□□□ -2.24
HNF4AP41235 IGHVIII-67-2-201ENST00000519849 88 ntBASIC1.07□□□□□ -2.24
HNF4AP41235 MIR3646-201ENST00000578301 84 ntBASIC1.07□□□□□ -2.24
HNF4AP41235 MIR5197-201ENST00000583721 112 ntBASIC1.07□□□□□ -2.24
HNF4AP41235 SNORD115-40-201ENST00000606510 82 ntBASIC1.07□□□□□ -2.24
HNF4AP41235 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC1.07□□□□□ -2.24
HNF4AP41235 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC1.07□□□□□ -2.24
HNF4AP41235 RNU4-11P-201ENST00000365287 132 ntBASIC1.06□□□□□ -2.24
HNF4AP41235 SNORA22-201ENST00000383907 134 ntBASIC1.06□□□□□ -2.24
HNF4AP41235 SNORA22C-201ENST00000384614 134 ntBASIC1.06□□□□□ -2.24
HNF4AP41235 Y_RNA.537-201ENST00000384626 109 ntBASIC1.06□□□□□ -2.24
HNF4AP41235 POLR2J4-204ENST00000418424 324 ntBASIC1.06□□□□□ -2.24
HNF4AP41235 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC1.06□□□□□ -2.24
HNF4AP41235 RNU6-1053P-201ENST00000515930 101 ntBASIC1.06□□□□□ -2.24
HNF4AP41235 SNORD79.1-201ENST00000516069 84 ntBASIC1.06□□□□□ -2.24
HNF4AP41235 SCARNA15-202ENST00000516881 127 ntBASIC1.06□□□□□ -2.24
HNF4AP41235 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC1.06□□□□□ -2.24
HNF4AP41235 AC243994.1-201ENST00000618627 109 ntBASIC1.06□□□□□ -2.24
HNF4AP41235 Y_RNA.778-201ENST00000620203 90 ntBASIC1.06□□□□□ -2.24
HNF4AP41235 AC008133.2-201ENST00000624540 351 ntBASIC1.06□□□□□ -2.24
HNF4AP41235 MTND1P7-201ENST00000632801 297 ntBASIC1.06□□□□□ -2.24
HNF4AP41235 LEKR1-212ENST00000640869 237 ntTSL 5 BASIC1.06□□□□□ -2.24
HNF4AP41235 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC1.05□□□□□ -2.24
HNF4AP41235 SNORA24-201ENST00000384096 131 ntBASIC1.05□□□□□ -2.24
HNF4AP41235 Y_RNA.497-201ENST00000384447 98 ntBASIC1.05□□□□□ -2.24
HNF4AP41235 SNORA80D-201ENST00000384488 135 ntBASIC1.05□□□□□ -2.24
HNF4AP41235 SNORD37.2-201ENST00000391075 66 ntBASIC1.05□□□□□ -2.24
HNF4AP41235 SNORA75.5-201ENST00000391291 81 ntBASIC1.05□□□□□ -2.24
HNF4AP41235 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC1.05□□□□□ -2.24
HNF4AP41235 AC107297.1-201ENST00000459991 176 ntBASIC1.05□□□□□ -2.24
HNF4AP41235 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.05□□□□□ -2.24
HNF4AP41235 RNU6-958P-201ENST00000516995 106 ntBASIC1.05□□□□□ -2.24
HNF4AP41235 MIR4295-201ENST00000585286 85 ntBASIC1.05□□□□□ -2.24
HNF4AP41235 MTND5P32-201ENST00000560711 1802 ntBASIC1.05□□□□□ -2.24
HNF4AP41235 Y_RNA.52-201ENST00000362760 96 ntBASIC1.04□□□□□ -2.24
HNF4AP41235 SNORA25.3-201ENST00000363205 127 ntBASIC1.04□□□□□ -2.24
HNF4AP41235 Y_RNA.251-201ENST00000364551 99 ntBASIC1.04□□□□□ -2.24
HNF4AP41235 SNORD114-24-201ENST00000365029 72 ntBASIC1.04□□□□□ -2.24
HNF4AP41235 Y_RNA.351-201ENST00000365436 96 ntBASIC1.04□□□□□ -2.24
HNF4AP41235 RNU6-321P-201ENST00000410912 106 ntBASIC1.04□□□□□ -2.24
HNF4AP41235 RNU7-197P-201ENST00000458836 62 ntBASIC1.04□□□□□ -2.24
HNF4AP41235 RNU7-67P-201ENST00000459003 62 ntBASIC1.04□□□□□ -2.24
HNF4AP41235 RPS29P24-201ENST00000486345 171 ntBASIC1.04□□□□□ -2.24
HNF4AP41235 RNU7-200P-201ENST00000516105 62 ntBASIC1.04□□□□□ -2.24
HNF4AP41235 RNU6-1149P-201ENST00000516810 97 ntBASIC1.04□□□□□ -2.24
HNF4AP41235 AP003716.2-201ENST00000528260 108 ntBASIC1.04□□□□□ -2.24
HNF4AP41235 AC112693.2-201ENST00000556538 232 ntBASIC1.04□□□□□ -2.24
HNF4AP41235 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC1.04□□□□□ -2.24
HNF4AP41235 MIR4251-201ENST00000635819 61 ntBASIC1.04□□□□□ -2.24
HNF4AP41235 MIR342-201ENST00000362212 99 ntBASIC1.03□□□□□ -2.24
HNF4AP41235 RNU6-1062P-201ENST00000383908 107 ntBASIC1.03□□□□□ -2.24
HNF4AP41235 Y_RNA.400-201ENST00000383963 111 ntBASIC1.03□□□□□ -2.24
HNF4AP41235 SNORA51.10-201ENST00000384418 136 ntBASIC1.03□□□□□ -2.24
HNF4AP41235 Y_RNA.506-201ENST00000384494 102 ntBASIC1.03□□□□□ -2.24
HNF4AP41235 RNU6-1067P-201ENST00000384752 107 ntBASIC1.03□□□□□ -2.24
HNF4AP41235 MIR200A-201ENST00000384875 90 ntBASIC1.03□□□□□ -2.24
HNF4AP41235 RNU6-913P-201ENST00000390913 95 ntBASIC1.03□□□□□ -2.24
HNF4AP41235 MIR1302-7-201ENST00000408841 72 ntBASIC1.03□□□□□ -2.24
HNF4AP41235 AC002429.1-201ENST00000437672 148 ntBASIC1.03□□□□□ -2.24
HNF4AP41235 AC087343.1-201ENST00000477341 475 ntBASIC1.03□□□□□ -2.24
HNF4AP41235 RNU6-998P-201ENST00000515894 101 ntBASIC1.03□□□□□ -2.24
HNF4AP41235 RNU6-346P-201ENST00000516288 111 ntBASIC1.03□□□□□ -2.24
HNF4AP41235 RNU2-60P-201ENST00000517290 128 ntBASIC1.03□□□□□ -2.24
HNF4AP41235 MIR548AO-201ENST00000579992 96 ntBASIC1.03□□□□□ -2.24
HNF4AP41235 AC131055.1-201ENST00000584626 316 ntBASIC1.03□□□□□ -2.24
HNF4AP41235 PRELID3BP2-201ENST00000605362 201 ntBASIC1.03□□□□□ -2.24
HNF4AP41235 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC1.03□□□□□ -2.25
HNF4AP41235 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC1.02□□□□□ -2.25
HNF4AP41235 RNU6-508P-201ENST00000363231 103 ntBASIC1.02□□□□□ -2.25
HNF4AP41235 Y_RNA.215-201ENST00000364204 112 ntBASIC1.02□□□□□ -2.25
HNF4AP41235 Y_RNA.363-201ENST00000365529 113 ntBASIC1.02□□□□□ -2.25
Retrieved 100 of 98,524 protein–RNA pairs in 15.8 ms