Protein–RNA interactions for Protein: P04114

APOB, Apolipoprotein B-100, humanhuman

Known RBP Predictions only

Length 4,563 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOBP04114 SNORA69-201ENST00000383895 132 ntBASIC-1.52□□□□□ -2.65
APOBP04114 EEF1A1P40-201ENST00000412883 573 ntBASIC-1.52□□□□□ -2.65
APOBP04114 AC009878.1-201ENST00000621819 340 ntBASIC-1.52□□□□□ -2.65
APOBP04114 AC091931.1-201ENST00000623488 728 ntBASIC-1.52□□□□□ -2.65
APOBP04114 Y_RNA.298-201ENST00000364960 107 ntBASIC-1.53□□□□□ -2.65
APOBP04114 RNU7-140P-201ENST00000459546 60 ntBASIC-1.53□□□□□ -2.65
APOBP04114 SNORA25.10-201ENST00000515926 124 ntBASIC-1.53□□□□□ -2.65
APOBP04114 MIR548AG2-201ENST00000581228 64 ntBASIC-1.53□□□□□ -2.65
APOBP04114 AC092574.1-201ENST00000609771 420 ntBASIC-1.53□□□□□ -2.65
APOBP04114 AL607023.1-201ENST00000620045 248 ntBASIC-1.53□□□□□ -2.65
APOBP04114 TIMM9P2-201ENST00000419324 266 ntBASIC-1.53□□□□□ -2.65
APOBP04114 AC093730.1-201ENST00000508825 448 ntTSL 3 BASIC-1.53□□□□□ -2.65
APOBP04114 AC097716.1-201ENST00000509136 180 ntTSL 2 BASIC-1.53□□□□□ -2.65
APOBP04114 5S_rRNA.13-201ENST00000622298 123 ntBASIC-1.53□□□□□ -2.65
APOBP04114 PLSCR5-AS1-201ENST00000473817 450 ntTSL 3 BASIC-1.53□□□□□ -2.65
APOBP04114 MIR302B-201ENST00000362188 73 ntBASIC-1.54□□□□□ -2.66
APOBP04114 Y_RNA.199-201ENST00000364014 102 ntBASIC-1.54□□□□□ -2.66
APOBP04114 RNY1P13-201ENST00000365030 105 ntBASIC-1.54□□□□□ -2.66
APOBP04114 AC098479.1-201ENST00000609225 154 ntBASIC-1.54□□□□□ -2.66
APOBP04114 Y_RNA.440-201ENST00000384120 114 ntBASIC-1.54□□□□□ -2.66
APOBP04114 AL357793.1-201ENST00000448412 401 ntTSL 5 BASIC-1.54□□□□□ -2.66
APOBP04114 MTND2P6-201ENST00000455337 1030 ntBASIC-1.54□□□□□ -2.66
APOBP04114 MTCO2P29-201ENST00000465212 189 ntBASIC-1.54□□□□□ -2.66
APOBP04114 RNU7-25P-201ENST00000516544 62 ntBASIC-1.54□□□□□ -2.66
APOBP04114 MIR4308-201ENST00000580634 81 ntBASIC-1.54□□□□□ -2.66
APOBP04114 Y_RNA.812-201ENST00000610788 101 ntBASIC-1.54□□□□□ -2.66
APOBP04114 Y_RNA.784-201ENST00000613803 101 ntBASIC-1.54□□□□□ -2.66
APOBP04114 Y_RNA.787-201ENST00000616522 101 ntBASIC-1.54□□□□□ -2.66
APOBP04114 Y_RNA.780-201ENST00000617336 101 ntBASIC-1.54□□□□□ -2.66
APOBP04114 Y_RNA.801-201ENST00000619005 101 ntBASIC-1.54□□□□□ -2.66
APOBP04114 AL157770.1-201ENST00000623049 439 ntBASIC-1.54□□□□□ -2.66
APOBP04114 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC-1.54□□□□□ -2.66
APOBP04114 AL354751.2-201ENST00000415471 210 ntBASIC-1.54□□□□□ -2.66
APOBP04114 ZNRD1-AS1_1.6-201ENST00000610339 68 ntBASIC-1.54□□□□□ -2.66
APOBP04114 RNU6-79P-201ENST00000362511 107 ntBASIC-1.55□□□□□ -2.66
APOBP04114 SNORD114-7-201ENST00000362520 77 ntBASIC-1.55□□□□□ -2.66
APOBP04114 AC063965.1-201ENST00000416679 499 ntTSL 3 BASIC-1.55□□□□□ -2.66
APOBP04114 TRAJ51-201ENST00000504127 63 ntBASIC-1.55□□□□□ -2.66
APOBP04114 AP000542.1-201ENST00000448473 371 ntBASIC-1.55□□□□□ -2.66
APOBP04114 RNU6-150P-201ENST00000516237 95 ntBASIC-1.55□□□□□ -2.66
APOBP04114 SNORD115-8-201ENST00000363856 82 ntBASIC-1.55□□□□□ -2.66
APOBP04114 SNORD115-38-201ENST00000365037 82 ntBASIC-1.55□□□□□ -2.66
APOBP04114 RNU6-434P-201ENST00000384376 107 ntBASIC-1.55□□□□□ -2.66
APOBP04114 RNU7-96P-201ENST00000459535 64 ntBASIC-1.55□□□□□ -2.66
APOBP04114 AC108729.2-201ENST00000476543 840 ntBASIC-1.55□□□□□ -2.66
APOBP04114 MIR6888-201ENST00000621977 67 ntBASIC-1.55□□□□□ -2.66
APOBP04114 AC008507.4-201ENST00000585464 127 ntBASIC-1.56□□□□□ -2.66
APOBP04114 U6.115-201ENST00000636045 103 ntBASIC-1.56□□□□□ -2.66
APOBP04114 Y_RNA.143-201ENST00000363520 106 ntBASIC-1.56□□□□□ -2.66
APOBP04114 RNU6-1057P-201ENST00000517162 102 ntBASIC-1.56□□□□□ -2.66
APOBP04114 AC091144.1-201ENST00000519573 138 ntBASIC-1.56□□□□□ -2.66
APOBP04114 AL157955.1-201ENST00000554433 331 ntTSL 3 BASIC-1.56□□□□□ -2.66
APOBP04114 AC245884.10-201ENST00000597355 337 ntBASIC-1.56□□□□□ -2.66
APOBP04114 SNORD114-10-201ENST00000363409 72 ntBASIC-1.56□□□□□ -2.66
APOBP04114 RNU6-61P-201ENST00000365528 109 ntBASIC-1.56□□□□□ -2.66
APOBP04114 SNORD116-9-201ENST00000384000 95 ntBASIC-1.56□□□□□ -2.66
APOBP04114 RNU6-571P-201ENST00000384128 107 ntBASIC-1.56□□□□□ -2.66
APOBP04114 SNORD116-3-201ENST00000384287 95 ntBASIC-1.56□□□□□ -2.66
APOBP04114 SNORD116-8-201ENST00000384365 95 ntBASIC-1.56□□□□□ -2.66
APOBP04114 SNORD116-7-201ENST00000384404 95 ntBASIC-1.56□□□□□ -2.66
APOBP04114 SNORD116-5-201ENST00000384462 95 ntBASIC-1.56□□□□□ -2.66
APOBP04114 PIGP-205ENST00000399103 656 ntAPPRIS P1 TSL 1 (best) BASIC-1.56□□□□□ -2.66
APOBP04114 RNU6-1208P-201ENST00000459588 107 ntBASIC-1.56□□□□□ -2.66
APOBP04114 MIR4464-201ENST00000580818 92 ntBASIC-1.56□□□□□ -2.66
APOBP04114 AC009480.1-201ENST00000402410 412 ntTSL 3 BASIC-1.57□□□□□ -2.66
APOBP04114 MTND1P12-201ENST00000455231 147 ntBASIC-1.57□□□□□ -2.66
APOBP04114 Y_RNA.601-201ENST00000410500 113 ntBASIC-1.57□□□□□ -2.66
APOBP04114 Y_RNA.809-201ENST00000516058 95 ntBASIC-1.57□□□□□ -2.66
APOBP04114 RNU4ATAC8P-201ENST00000516196 109 ntBASIC-1.57□□□□□ -2.66
APOBP04114 AC023796.2-201ENST00000545410 451 ntTSL 3 BASIC-1.57□□□□□ -2.66
APOBP04114 Y_RNA.509-201ENST00000384506 99 ntBASIC-1.57□□□□□ -2.66
APOBP04114 SNORA20-201ENST00000384662 132 ntBASIC-1.57□□□□□ -2.66
APOBP04114 RNU6-913P-201ENST00000390913 95 ntBASIC-1.57□□□□□ -2.66
APOBP04114 Z83846.1-201ENST00000446798 265 ntBASIC-1.57□□□□□ -2.66
APOBP04114 RNU6-336P-201ENST00000364891 107 ntBASIC-1.57□□□□□ -2.66
APOBP04114 MIR519A1-201ENST00000385257 85 ntBASIC-1.57□□□□□ -2.66
APOBP04114 MIR216B-201ENST00000390186 82 ntBASIC-1.57□□□□□ -2.66
APOBP04114 AC008568.1-203ENST00000433406 765 ntTSL 3 BASIC-1.57□□□□□ -2.66
APOBP04114 AC092755.1-201ENST00000441746 97 ntTSL 3 BASIC-1.57□□□□□ -2.66
APOBP04114 RNU7-79P-201ENST00000516082 62 ntBASIC-1.57□□□□□ -2.66
APOBP04114 Y_RNA.704-201ENST00000516851 102 ntBASIC-1.57□□□□□ -2.66
APOBP04114 RNU4-80P-201ENST00000363200 141 ntBASIC-1.58□□□□□ -2.66
APOBP04114 Y_RNA.123-201ENST00000363338 102 ntBASIC-1.58□□□□□ -2.66
APOBP04114 AC097510.1-201ENST00000510945 133 ntBASIC-1.58□□□□□ -2.66
APOBP04114 RNU6-1290P-201ENST00000362957 109 ntBASIC-1.58□□□□□ -2.66
APOBP04114 Y_RNA.353-201ENST00000365440 108 ntBASIC-1.58□□□□□ -2.66
APOBP04114 RPL39P5-202ENST00000512505 151 ntBASIC-1.58□□□□□ -2.66
APOBP04114 RNU6-266P-201ENST00000364225 107 ntBASIC-1.58□□□□□ -2.66
APOBP04114 SNORA15B-2-201ENST00000384058 135 ntBASIC-1.58□□□□□ -2.66
APOBP04114 SNORA15B-1-201ENST00000384334 135 ntBASIC-1.58□□□□□ -2.66
APOBP04114 MTND4LP14-201ENST00000429447 288 ntBASIC-1.58□□□□□ -2.66
APOBP04114 U7.5-201ENST00000517224 61 ntBASIC-1.58□□□□□ -2.66
APOBP04114 AC022616.6-201ENST00000520479 119 ntBASIC-1.58□□□□□ -2.66
APOBP04114 AP002782.1-201ENST00000623107 614 ntBASIC-1.58□□□□□ -2.66
APOBP04114 SNORD115-30-201ENST00000364117 82 ntBASIC-1.59□□□□□ -2.66
APOBP04114 PCDH9-AS1-201ENST00000430861 532 ntTSL 2 BASIC-1.59□□□□□ -2.66
APOBP04114 Y_RNA.701-201ENST00000516812 110 ntBASIC-1.59□□□□□ -2.66
APOBP04114 snoU13.10-201ENST00000459301 103 ntBASIC-1.59□□□□□ -2.66
APOBP04114 RNU6-1114P-201ENST00000516022 107 ntBASIC-1.59□□□□□ -2.66
APOBP04114 AC007671.2-201ENST00000637344 619 ntBASIC-1.59□□□□□ -2.66
Retrieved 100 of 98,524 protein–RNA pairs in 193.8 ms