Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 AL591806.2-201ENST00000433122 173 ntBASIC1.78□□□□□ -2.12
HOXA3O43365 snoU13.16-201ENST00000459350 104 ntBASIC1.78□□□□□ -2.12
HOXA3O43365 MIR5694-201ENST00000581190 76 ntBASIC1.78□□□□□ -2.12
HOXA3O43365 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC1.77□□□□□ -2.13
HOXA3O43365 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC1.77□□□□□ -2.13
HOXA3O43365 Y_RNA.85-201ENST00000363014 111 ntBASIC1.77□□□□□ -2.13
HOXA3O43365 SNORA63.5-201ENST00000363548 123 ntBASIC1.77□□□□□ -2.13
HOXA3O43365 Y_RNA.171-201ENST00000363760 102 ntBASIC1.77□□□□□ -2.13
HOXA3O43365 RNU6-1107P-201ENST00000364817 104 ntBASIC1.77□□□□□ -2.13
HOXA3O43365 SNORA67.3-201ENST00000384366 140 ntBASIC1.77□□□□□ -2.13
HOXA3O43365 MIR17-201ENST00000385012 84 ntBASIC1.77□□□□□ -2.13
HOXA3O43365 AL451046.2-201ENST00000403074 277 ntBASIC1.77□□□□□ -2.13
HOXA3O43365 snoU13.23-201ENST00000458863 104 ntBASIC1.77□□□□□ -2.13
HOXA3O43365 RNU7-6P-201ENST00000516845 62 ntBASIC1.77□□□□□ -2.13
HOXA3O43365 RNU6-1258P-201ENST00000516911 111 ntBASIC1.77□□□□□ -2.13
HOXA3O43365 MIR3163-201ENST00000581592 73 ntBASIC1.77□□□□□ -2.13
HOXA3O43365 MIR8055-201ENST00000610739 97 ntBASIC1.77□□□□□ -2.13
HOXA3O43365 AC008133.2-201ENST00000624540 351 ntBASIC1.77□□□□□ -2.13
HOXA3O43365 SNORA22.1-201ENST00000362701 134 ntBASIC1.76□□□□□ -2.13
HOXA3O43365 Y_RNA.362-201ENST00000365518 110 ntBASIC1.76□□□□□ -2.13
HOXA3O43365 Y_RNA.430-201ENST00000384081 110 ntBASIC1.76□□□□□ -2.13
HOXA3O43365 ATP6V0E1P3-201ENST00000420036 246 ntBASIC1.76□□□□□ -2.13
HOXA3O43365 RNU7-113P-201ENST00000459273 62 ntBASIC1.76□□□□□ -2.13
HOXA3O43365 AC108210.2-201ENST00000503681 201 ntBASIC1.76□□□□□ -2.13
HOXA3O43365 AC121758.2-201ENST00000553271 193 ntBASIC1.76□□□□□ -2.13
HOXA3O43365 AC015688.6-201ENST00000577737 104 ntBASIC1.76□□□□□ -2.13
HOXA3O43365 AL513534.2-201ENST00000603836 250 ntBASIC1.76□□□□□ -2.13
HOXA3O43365 AL035470.1-201ENST00000622571 220 ntBASIC1.76□□□□□ -2.13
HOXA3O43365 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC1.76□□□□□ -2.13
HOXA3O43365 AL589743.1-201ENST00000551932 2712 ntBASIC1.76□□□□□ -2.13
HOXA3O43365 AC003984.1-201ENST00000450977 4104 ntTSL 1 (best) BASIC1.76□□□□□ -2.13
HOXA3O43365 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC1.75□□□□□ -2.13
HOXA3O43365 Y_RNA.344-201ENST00000365381 112 ntBASIC1.75□□□□□ -2.13
HOXA3O43365 RNU6-147P-201ENST00000383983 107 ntBASIC1.75□□□□□ -2.13
HOXA3O43365 MIR548D2-201ENST00000384955 97 ntBASIC1.75□□□□□ -2.13
HOXA3O43365 HMGN1P33-201ENST00000432945 451 ntBASIC1.75□□□□□ -2.13
HOXA3O43365 IGHVII-40-1-201ENST00000517316 58 ntBASIC1.75□□□□□ -2.13
HOXA3O43365 IGHVIII-5-1-201ENST00000523059 99 ntBASIC1.75□□□□□ -2.13
HOXA3O43365 AC090616.3-202ENST00000583346 205 ntTSL 2 BASIC1.75□□□□□ -2.13
HOXA3O43365 AC103810.8-201ENST00000607347 118 ntBASIC1.75□□□□□ -2.13
HOXA3O43365 MIR219B-201ENST00000637023 88 ntBASIC1.75□□□□□ -2.13
HOXA3O43365 MIR6841-201ENST00000637129 72 ntBASIC1.75□□□□□ -2.13
HOXA3O43365 SNORD115-2-201ENST00000362842 82 ntBASIC1.74□□□□□ -2.13
HOXA3O43365 Y_RNA.116-201ENST00000363292 103 ntBASIC1.74□□□□□ -2.13
HOXA3O43365 SNORD115-20-201ENST00000365099 82 ntBASIC1.74□□□□□ -2.13
HOXA3O43365 MIR764-201ENST00000390811 85 ntBASIC1.74□□□□□ -2.13
HOXA3O43365 RPS3AP1-201ENST00000413190 320 ntBASIC1.74□□□□□ -2.13
HOXA3O43365 RPS23P4-201ENST00000487908 423 ntBASIC1.74□□□□□ -2.13
HOXA3O43365 RNU7-41P-201ENST00000515917 61 ntBASIC1.74□□□□□ -2.13
HOXA3O43365 RNA5SP200-201ENST00000516360 103 ntBASIC1.74□□□□□ -2.13
HOXA3O43365 RNU6-922P-201ENST00000516753 99 ntBASIC1.74□□□□□ -2.13
HOXA3O43365 AC015712.3-201ENST00000559380 164 ntBASIC1.74□□□□□ -2.13
HOXA3O43365 TTK-202ENST00000369798 3010 ntAPPRIS P3 TSL 1 (best) BASIC1.74□□□□□ -2.13
HOXA3O43365 Y_RNA.49-201ENST00000362714 112 ntBASIC1.73□□□□□ -2.13
HOXA3O43365 SNORA1.1-201ENST00000364671 133 ntBASIC1.73□□□□□ -2.13
HOXA3O43365 Y_RNA.299-201ENST00000364973 94 ntBASIC1.73□□□□□ -2.13
HOXA3O43365 RNA5SP37-201ENST00000365420 130 ntBASIC1.73□□□□□ -2.13
HOXA3O43365 RNU4-52P-201ENST00000384209 138 ntBASIC1.73□□□□□ -2.13
HOXA3O43365 RNU6-106P-201ENST00000384405 107 ntBASIC1.73□□□□□ -2.13
HOXA3O43365 SNORD41-201ENST00000386967 70 ntBASIC1.73□□□□□ -2.13
HOXA3O43365 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC1.73□□□□□ -2.13
HOXA3O43365 AC113410.1-201ENST00000505029 247 ntBASIC1.73□□□□□ -2.13
HOXA3O43365 uc_338.28-201ENST00000612082 187 ntBASIC1.73□□□□□ -2.13
HOXA3O43365 AC087741.2-201ENST00000619415 172 ntBASIC1.73□□□□□ -2.13
HOXA3O43365 MIR4251-201ENST00000635819 61 ntBASIC1.73□□□□□ -2.13
HOXA3O43365 RICTOR-202ENST00000357387 9543 ntAPPRIS P1 TSL 1 (best) BASIC1.73□□□□□ -2.13
HOXA3O43365 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC1.73□□□□□ -2.13
HOXA3O43365 LCORL-202ENST00000382224 4984 ntAPPRIS ALT2 TSL 5 BASIC1.73□□□□□ -2.13
HOXA3O43365 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC1.72□□□□□ -2.13
HOXA3O43365 AC130466.1-201ENST00000636354 4683 ntTSL 5 BASIC1.72□□□□□ -2.13
HOXA3O43365 AL596028.1-201ENST00000326971 197 ntBASIC1.72□□□□□ -2.13
HOXA3O43365 RNU6-1014P-201ENST00000383940 103 ntBASIC1.72□□□□□ -2.13
HOXA3O43365 Y_RNA.470-201ENST00000384307 117 ntBASIC1.72□□□□□ -2.13
HOXA3O43365 RNU6-482P-201ENST00000391068 107 ntBASIC1.72□□□□□ -2.13
HOXA3O43365 RPL39P34-201ENST00000477141 156 ntBASIC1.72□□□□□ -2.13
HOXA3O43365 AC090255.1-201ENST00000495779 349 ntBASIC1.72□□□□□ -2.13
HOXA3O43365 RNU6ATAC9P-201ENST00000516210 116 ntBASIC1.72□□□□□ -2.13
HOXA3O43365 RNA5SP33-201ENST00000516687 98 ntBASIC1.72□□□□□ -2.13
HOXA3O43365 MIR3613-201ENST00000579844 87 ntBASIC1.72□□□□□ -2.13
HOXA3O43365 MIR548AO-201ENST00000579992 96 ntBASIC1.72□□□□□ -2.13
HOXA3O43365 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC1.72□□□□□ -2.13
HOXA3O43365 Y_RNA.323-201ENST00000365157 109 ntBASIC1.71□□□□□ -2.14
HOXA3O43365 RNU4-69P-201ENST00000410677 143 ntBASIC1.71□□□□□ -2.14
HOXA3O43365 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC1.71□□□□□ -2.14
HOXA3O43365 AL031737.1-201ENST00000450125 223 ntBASIC1.71□□□□□ -2.14
HOXA3O43365 snoU13.9-201ENST00000458927 103 ntBASIC1.71□□□□□ -2.14
HOXA3O43365 RPL23AP42-201ENST00000471152 471 ntBASIC1.71□□□□□ -2.14
HOXA3O43365 AC068339.1-201ENST00000526965 141 ntBASIC1.71□□□□□ -2.14
HOXA3O43365 RNU6-94P-201ENST00000607728 107 ntBASIC1.71□□□□□ -2.14
HOXA3O43365 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC1.71□□□□□ -2.14
HOXA3O43365 MIR8063-201ENST00000621930 81 ntBASIC1.71□□□□□ -2.14
HOXA3O43365 Z97988.1-201ENST00000637697 135 ntBASIC1.71□□□□□ -2.14
HOXA3O43365 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC1.7□□□□□ -2.14
HOXA3O43365 MIR450A1-201ENST00000362262 91 ntBASIC1.7□□□□□ -2.14
HOXA3O43365 RNU6-554P-201ENST00000410466 106 ntBASIC1.7□□□□□ -2.14
HOXA3O43365 AL356379.1-201ENST00000414105 126 ntBASIC1.7□□□□□ -2.14
HOXA3O43365 HMGN2P23-201ENST00000456759 269 ntBASIC1.7□□□□□ -2.14
HOXA3O43365 RNA5SP233-201ENST00000459153 113 ntBASIC1.7□□□□□ -2.14
HOXA3O43365 AC104435.1-201ENST00000483483 166 ntBASIC1.7□□□□□ -2.14
HOXA3O43365 MIR5009-201ENST00000578736 100 ntBASIC1.7□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 176.2 ms