Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 MIR3133-201ENST00000583157 78 ntBASIC1.67□□□□□ -2.14
PCDHA3Q9Y5H8 MIR8081-201ENST00000611533 95 ntBASIC1.67□□□□□ -2.14
PCDHA3Q9Y5H8 RNA5SP99-201ENST00000364020 114 ntBASIC1.66□□□□□ -2.14
PCDHA3Q9Y5H8 SNORA70.7-201ENST00000384159 133 ntBASIC1.66□□□□□ -2.14
PCDHA3Q9Y5H8 SUMO1P3-201ENST00000439961 304 ntBASIC1.66□□□□□ -2.14
PCDHA3Q9Y5H8 RNU7-96P-201ENST00000459535 64 ntBASIC1.66□□□□□ -2.14
PCDHA3Q9Y5H8 RNU7-80P-201ENST00000459562 61 ntBASIC1.66□□□□□ -2.14
PCDHA3Q9Y5H8 RPS29P24-201ENST00000486345 171 ntBASIC1.66□□□□□ -2.14
PCDHA3Q9Y5H8 RNU6-346P-201ENST00000516288 111 ntBASIC1.66□□□□□ -2.14
PCDHA3Q9Y5H8 MIR502-201ENST00000606349 86 ntBASIC1.66□□□□□ -2.14
PCDHA3Q9Y5H8 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC1.66□□□□□ -2.14
PCDHA3Q9Y5H8 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.65□□□□□ -2.15
PCDHA3Q9Y5H8 Y_RNA.120-201ENST00000363304 110 ntBASIC1.65□□□□□ -2.15
PCDHA3Q9Y5H8 RNY1P11-201ENST00000363759 113 ntBASIC1.65□□□□□ -2.15
PCDHA3Q9Y5H8 Y_RNA.343-201ENST00000365354 112 ntBASIC1.65□□□□□ -2.15
PCDHA3Q9Y5H8 SNORD50.2-201ENST00000365465 70 ntBASIC1.65□□□□□ -2.15
PCDHA3Q9Y5H8 MIR320A-201ENST00000385302 82 ntBASIC1.65□□□□□ -2.15
PCDHA3Q9Y5H8 RPS27P16-201ENST00000425758 201 ntBASIC1.65□□□□□ -2.15
PCDHA3Q9Y5H8 SNORD111.1-201ENST00000516421 86 ntBASIC1.65□□□□□ -2.15
PCDHA3Q9Y5H8 SNORA25.15-201ENST00000516487 89 ntBASIC1.65□□□□□ -2.15
PCDHA3Q9Y5H8 RNU6-1149P-201ENST00000516810 97 ntBASIC1.65□□□□□ -2.15
PCDHA3Q9Y5H8 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.65□□□□□ -2.15
PCDHA3Q9Y5H8 AL512310.8-201ENST00000550183 120 ntBASIC1.65□□□□□ -2.15
PCDHA3Q9Y5H8 MIR4791-201ENST00000607666 84 ntBASIC1.65□□□□□ -2.15
PCDHA3Q9Y5H8 AC008133.2-201ENST00000624540 351 ntBASIC1.65□□□□□ -2.15
PCDHA3Q9Y5H8 MTND5P32-201ENST00000560711 1802 ntBASIC1.65□□□□□ -2.15
PCDHA3Q9Y5H8 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1.65□□□□□ -2.15
PCDHA3Q9Y5H8 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.64□□□□□ -2.15
PCDHA3Q9Y5H8 Y_RNA.351-201ENST00000365436 96 ntBASIC1.64□□□□□ -2.15
PCDHA3Q9Y5H8 Y_RNA.454-201ENST00000384224 113 ntBASIC1.64□□□□□ -2.15
PCDHA3Q9Y5H8 RPS29P29-201ENST00000456396 171 ntBASIC1.64□□□□□ -2.15
PCDHA3Q9Y5H8 RNU6-998P-201ENST00000515894 101 ntBASIC1.64□□□□□ -2.15
PCDHA3Q9Y5H8 SNORA25.12-201ENST00000516202 82 ntBASIC1.64□□□□□ -2.15
PCDHA3Q9Y5H8 AC243994.1-201ENST00000618627 109 ntBASIC1.64□□□□□ -2.15
PCDHA3Q9Y5H8 AP001340.1-201ENST00000624405 217 ntBASIC1.64□□□□□ -2.15
PCDHA3Q9Y5H8 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC1.63□□□□□ -2.15
PCDHA3Q9Y5H8 RNU6-774P-201ENST00000363238 107 ntBASIC1.63□□□□□ -2.15
PCDHA3Q9Y5H8 Y_RNA.568-201ENST00000384742 113 ntBASIC1.63□□□□□ -2.15
PCDHA3Q9Y5H8 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC1.63□□□□□ -2.15
PCDHA3Q9Y5H8 MTATP6P21-201ENST00000440681 189 ntBASIC1.63□□□□□ -2.15
PCDHA3Q9Y5H8 RPL39P39-201ENST00000455840 151 ntBASIC1.63□□□□□ -2.15
PCDHA3Q9Y5H8 RNA5SP236-201ENST00000516169 116 ntBASIC1.63□□□□□ -2.15
PCDHA3Q9Y5H8 RNU6-970P-201ENST00000516312 107 ntBASIC1.63□□□□□ -2.15
PCDHA3Q9Y5H8 AL121890.5-201ENST00000620848 304 ntBASIC1.63□□□□□ -2.15
PCDHA3Q9Y5H8 SNORD18B-201ENST00000365659 72 ntBASIC1.62□□□□□ -2.15
PCDHA3Q9Y5H8 SNORA51.10-201ENST00000384418 136 ntBASIC1.62□□□□□ -2.15
PCDHA3Q9Y5H8 MIR613-201ENST00000385248 95 ntBASIC1.62□□□□□ -2.15
PCDHA3Q9Y5H8 AL603914.1-201ENST00000401964 204 ntBASIC1.62□□□□□ -2.15
PCDHA3Q9Y5H8 AL035398.1-201ENST00000430869 322 ntBASIC1.62□□□□□ -2.15
PCDHA3Q9Y5H8 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC1.62□□□□□ -2.15
PCDHA3Q9Y5H8 AL392103.1-201ENST00000447000 198 ntBASIC1.62□□□□□ -2.15
PCDHA3Q9Y5H8 RNU7-41P-201ENST00000515917 61 ntBASIC1.62□□□□□ -2.15
PCDHA3Q9Y5H8 RNU7-53P-201ENST00000516705 60 ntBASIC1.62□□□□□ -2.15
PCDHA3Q9Y5H8 RNU2-60P-201ENST00000517290 128 ntBASIC1.62□□□□□ -2.15
PCDHA3Q9Y5H8 MIR4285-201ENST00000581001 85 ntBASIC1.62□□□□□ -2.15
PCDHA3Q9Y5H8 AL096861.1-201ENST00000610899 123 ntBASIC1.62□□□□□ -2.15
PCDHA3Q9Y5H8 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC1.61□□□□□ -2.15
PCDHA3Q9Y5H8 RNU1-17P-201ENST00000363022 152 ntBASIC1.61□□□□□ -2.15
PCDHA3Q9Y5H8 RNU6-997P-201ENST00000384725 107 ntBASIC1.61□□□□□ -2.15
PCDHA3Q9Y5H8 MIR570-201ENST00000384917 97 ntBASIC1.61□□□□□ -2.15
PCDHA3Q9Y5H8 RNU7-73P-201ENST00000458743 63 ntBASIC1.61□□□□□ -2.15
PCDHA3Q9Y5H8 RNU7-67P-201ENST00000459003 62 ntBASIC1.61□□□□□ -2.15
PCDHA3Q9Y5H8 snoU13.16-201ENST00000459350 104 ntBASIC1.61□□□□□ -2.15
PCDHA3Q9Y5H8 AL133373.1-201ENST00000497098 94 ntBASIC1.61□□□□□ -2.15
PCDHA3Q9Y5H8 RNU6-426P-201ENST00000516464 97 ntBASIC1.61□□□□□ -2.15
PCDHA3Q9Y5H8 RNU7-70P-201ENST00000516941 66 ntBASIC1.61□□□□□ -2.15
PCDHA3Q9Y5H8 RNU6-165P-201ENST00000517170 99 ntBASIC1.61□□□□□ -2.15
PCDHA3Q9Y5H8 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC1.61□□□□□ -2.15
PCDHA3Q9Y5H8 MIR3192-201ENST00000584920 77 ntBASIC1.61□□□□□ -2.15
PCDHA3Q9Y5H8 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC1.61□□□□□ -2.15
PCDHA3Q9Y5H8 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC1.61□□□□□ -2.15
PCDHA3Q9Y5H8 RNA5SP48-201ENST00000363969 126 ntBASIC1.6□□□□□ -2.15
PCDHA3Q9Y5H8 RNA5SP190-201ENST00000365222 118 ntBASIC1.6□□□□□ -2.15
PCDHA3Q9Y5H8 RNU6-460P-201ENST00000391158 108 ntBASIC1.6□□□□□ -2.15
PCDHA3Q9Y5H8 RNA5SP458-201ENST00000516188 119 ntBASIC1.6□□□□□ -2.15
PCDHA3Q9Y5H8 RNU6-958P-201ENST00000516995 106 ntBASIC1.6□□□□□ -2.15
PCDHA3Q9Y5H8 MIR3683-201ENST00000580847 82 ntBASIC1.6□□□□□ -2.15
PCDHA3Q9Y5H8 DLEU2_5.2-201ENST00000610606 84 ntBASIC1.6□□□□□ -2.15
PCDHA3Q9Y5H8 MIR4251-201ENST00000635819 61 ntBASIC1.6□□□□□ -2.15
PCDHA3Q9Y5H8 U8.1-201ENST00000362843 134 ntBASIC1.59□□□□□ -2.15
PCDHA3Q9Y5H8 Y_RNA.420-201ENST00000384043 110 ntBASIC1.59□□□□□ -2.15
PCDHA3Q9Y5H8 MIR1304-201ENST00000408243 91 ntBASIC1.59□□□□□ -2.15
PCDHA3Q9Y5H8 AC023790.1-201ENST00000482174 347 ntBASIC1.59□□□□□ -2.15
PCDHA3Q9Y5H8 RNU6-947P-201ENST00000516264 106 ntBASIC1.59□□□□□ -2.15
PCDHA3Q9Y5H8 AP001328.1-201ENST00000528550 176 ntBASIC1.59□□□□□ -2.15
PCDHA3Q9Y5H8 BX248123.2-201ENST00000606318 124 ntBASIC1.59□□□□□ -2.15
PCDHA3Q9Y5H8 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC1.59□□□□□ -2.15
PCDHA3Q9Y5H8 AC091932.4-201ENST00000623386 200 ntBASIC1.59□□□□□ -2.15
PCDHA3Q9Y5H8 AC010332.2-201ENST00000613083 1904 ntBASIC1.59□□□□□ -2.15
PCDHA3Q9Y5H8 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.58□□□□□ -2.16
PCDHA3Q9Y5H8 Y_RNA.140-201ENST00000363474 103 ntBASIC1.58□□□□□ -2.16
PCDHA3Q9Y5H8 RNU1-133P-201ENST00000364867 167 ntBASIC1.58□□□□□ -2.16
PCDHA3Q9Y5H8 RNU6-187P-201ENST00000384139 106 ntBASIC1.58□□□□□ -2.16
PCDHA3Q9Y5H8 RNU6-1054P-201ENST00000411293 104 ntBASIC1.58□□□□□ -2.16
PCDHA3Q9Y5H8 RNU2-11P-201ENST00000459191 187 ntBASIC1.58□□□□□ -2.16
PCDHA3Q9Y5H8 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC1.58□□□□□ -2.16
PCDHA3Q9Y5H8 AP000648.3-201ENST00000623539 4507 ntBASIC1.58□□□□□ -2.16
PCDHA3Q9Y5H8 RNU6-704P-201ENST00000364162 103 ntBASIC1.57□□□□□ -2.16
PCDHA3Q9Y5H8 RNU6-915P-201ENST00000364943 103 ntBASIC1.57□□□□□ -2.16
PCDHA3Q9Y5H8 snoU13.25-201ENST00000458945 104 ntBASIC1.57□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 173.5 ms