Protein–RNA interactions for Protein: Q9UKF6

CPSF3, Cleavage and polyadenylation specificity factor subunit 3, humanhuman

Known RBP Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3Q9UKF6 AC087499.4-201ENST00000448505 178 ntBASIC0.87□□□□□ -2.27
CPSF3Q9UKF6 SNORD127-201ENST00000458892 86 ntBASIC0.87□□□□□ -2.27
CPSF3Q9UKF6 ACA64.5-201ENST00000516207 127 ntBASIC0.87□□□□□ -2.27
CPSF3Q9UKF6 RNU6-327P-201ENST00000516270 127 ntBASIC0.87□□□□□ -2.27
CPSF3Q9UKF6 MIR2115-201ENST00000516657 100 ntBASIC0.87□□□□□ -2.27
CPSF3Q9UKF6 SNORD36C-201ENST00000516733 66 ntBASIC0.87□□□□□ -2.27
CPSF3Q9UKF6 AP000942.4-201ENST00000604811 241 ntBASIC0.87□□□□□ -2.27
CPSF3Q9UKF6 UGP2-230ENST00000626380 276 ntTSL 5 BASIC0.87□□□□□ -2.27
CPSF3Q9UKF6 MT-ATP8-201ENST00000361851 207 ntAPPRIS P1 BASIC0.86□□□□□ -2.27
CPSF3Q9UKF6 Y_RNA.54-201ENST00000362766 105 ntBASIC0.86□□□□□ -2.27
CPSF3Q9UKF6 Y_RNA.224-201ENST00000364308 111 ntBASIC0.86□□□□□ -2.27
CPSF3Q9UKF6 SNORD113.3-201ENST00000364630 78 ntBASIC0.86□□□□□ -2.27
CPSF3Q9UKF6 RNU6-396P-201ENST00000365369 105 ntBASIC0.86□□□□□ -2.27
CPSF3Q9UKF6 RNU6-1335P-201ENST00000365426 107 ntBASIC0.86□□□□□ -2.27
CPSF3Q9UKF6 RNY3P5-201ENST00000384127 102 ntBASIC0.86□□□□□ -2.27
CPSF3Q9UKF6 SNORA2B-201ENST00000384583 137 ntBASIC0.86□□□□□ -2.27
CPSF3Q9UKF6 SNORD111-201ENST00000408139 94 ntBASIC0.86□□□□□ -2.27
CPSF3Q9UKF6 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.86□□□□□ -2.27
CPSF3Q9UKF6 AC090844.1-201ENST00000422019 156 ntBASIC0.86□□□□□ -2.27
CPSF3Q9UKF6 MTCYBP9-201ENST00000431021 303 ntBASIC0.86□□□□□ -2.27
CPSF3Q9UKF6 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC0.86□□□□□ -2.27
CPSF3Q9UKF6 AC107297.1-201ENST00000459991 176 ntBASIC0.86□□□□□ -2.27
CPSF3Q9UKF6 RNU6-197P-201ENST00000516680 100 ntBASIC0.86□□□□□ -2.27
CPSF3Q9UKF6 AP003484.1-201ENST00000530974 250 ntBASIC0.86□□□□□ -2.27
CPSF3Q9UKF6 AC097639.2-201ENST00000603159 172 ntBASIC0.86□□□□□ -2.27
CPSF3Q9UKF6 SNORD45.3-201ENST00000363836 72 ntBASIC0.85□□□□□ -2.27
CPSF3Q9UKF6 Y_RNA.432-201ENST00000384087 111 ntBASIC0.85□□□□□ -2.27
CPSF3Q9UKF6 RNU6-125P-201ENST00000384505 107 ntBASIC0.85□□□□□ -2.27
CPSF3Q9UKF6 Y_RNA.562-201ENST00000384695 113 ntBASIC0.85□□□□□ -2.27
CPSF3Q9UKF6 SNORA40.5-201ENST00000391061 128 ntBASIC0.85□□□□□ -2.27
CPSF3Q9UKF6 RNU2-70P-201ENST00000410718 179 ntBASIC0.85□□□□□ -2.27
CPSF3Q9UKF6 AC004941.2-201ENST00000427009 228 ntBASIC0.85□□□□□ -2.27
CPSF3Q9UKF6 snoU13.16-201ENST00000459350 104 ntBASIC0.85□□□□□ -2.27
CPSF3Q9UKF6 RNU6-504P-201ENST00000516568 104 ntBASIC0.85□□□□□ -2.27
CPSF3Q9UKF6 AC108706.1-201ENST00000611053 297 ntBASIC0.85□□□□□ -2.27
CPSF3Q9UKF6 AL442067.1-201ENST00000613261 223 ntBASIC0.85□□□□□ -2.27
CPSF3Q9UKF6 Y_RNA.288-201ENST00000364854 92 ntBASIC0.84□□□□□ -2.27
CPSF3Q9UKF6 RNU4-17P-201ENST00000365598 141 ntBASIC0.84□□□□□ -2.27
CPSF3Q9UKF6 MIR146A-201ENST00000385201 99 ntBASIC0.84□□□□□ -2.27
CPSF3Q9UKF6 RNU6-1228P-201ENST00000391014 107 ntBASIC0.84□□□□□ -2.27
CPSF3Q9UKF6 AL035398.1-201ENST00000430869 322 ntBASIC0.84□□□□□ -2.27
CPSF3Q9UKF6 AF228730.3-201ENST00000436691 102 ntBASIC0.84□□□□□ -2.27
CPSF3Q9UKF6 RNU7-67P-201ENST00000459003 62 ntBASIC0.84□□□□□ -2.27
CPSF3Q9UKF6 RNA5SP153-201ENST00000516498 76 ntBASIC0.84□□□□□ -2.27
CPSF3Q9UKF6 MIR6788-201ENST00000618842 66 ntBASIC0.84□□□□□ -2.27
CPSF3Q9UKF6 AC134878.1-201ENST00000619901 243 ntBASIC0.84□□□□□ -2.27
CPSF3Q9UKF6 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC0.84□□□□□ -2.28
CPSF3Q9UKF6 HSBP1P2-201ENST00000299671 229 ntBASIC0.83□□□□□ -2.28
CPSF3Q9UKF6 Y_RNA.168-201ENST00000363740 102 ntBASIC0.83□□□□□ -2.28
CPSF3Q9UKF6 SNORA27-201ENST00000384323 126 ntBASIC0.83□□□□□ -2.28
CPSF3Q9UKF6 MIR605-201ENST00000385078 83 ntBASIC0.83□□□□□ -2.28
CPSF3Q9UKF6 MT-TN-201ENST00000387400 73 ntBASIC0.83□□□□□ -2.28
CPSF3Q9UKF6 RNU6-913P-201ENST00000390913 95 ntBASIC0.83□□□□□ -2.28
CPSF3Q9UKF6 SNORA26-201ENST00000391286 122 ntBASIC0.83□□□□□ -2.28
CPSF3Q9UKF6 MIR548J-201ENST00000408833 112 ntBASIC0.83□□□□□ -2.28
CPSF3Q9UKF6 AC006461.1-201ENST00000412637 326 ntBASIC0.83□□□□□ -2.28
CPSF3Q9UKF6 PSMC1P5-201ENST00000512850 177 ntBASIC0.83□□□□□ -2.28
CPSF3Q9UKF6 RNU6-561P-201ENST00000516222 102 ntBASIC0.83□□□□□ -2.28
CPSF3Q9UKF6 Y_RNA.668-201ENST00000516233 93 ntBASIC0.83□□□□□ -2.28
CPSF3Q9UKF6 RNU6-958P-201ENST00000516995 106 ntBASIC0.83□□□□□ -2.28
CPSF3Q9UKF6 CYP3A137P-201ENST00000562436 69 ntBASIC0.83□□□□□ -2.28
CPSF3Q9UKF6 MIR6866-201ENST00000638146 69 ntBASIC0.83□□□□□ -2.28
CPSF3Q9UKF6 MIR377-201ENST00000362145 69 ntBASIC0.82□□□□□ -2.28
CPSF3Q9UKF6 Y_RNA.162-201ENST00000363683 102 ntBASIC0.82□□□□□ -2.28
CPSF3Q9UKF6 Y_RNA.199-201ENST00000364014 102 ntBASIC0.82□□□□□ -2.28
CPSF3Q9UKF6 Y_RNA.262-201ENST00000364641 102 ntBASIC0.82□□□□□ -2.28
CPSF3Q9UKF6 Y_RNA.292-201ENST00000364904 97 ntBASIC0.82□□□□□ -2.28
CPSF3Q9UKF6 RNU6-205P-201ENST00000390858 107 ntBASIC0.82□□□□□ -2.28
CPSF3Q9UKF6 SNORD89-201ENST00000390981 114 ntBASIC0.82□□□□□ -2.28
CPSF3Q9UKF6 MIR548H3-201ENST00000408771 118 ntBASIC0.82□□□□□ -2.28
CPSF3Q9UKF6 RNU6-994P-201ENST00000410507 111 ntBASIC0.82□□□□□ -2.28
CPSF3Q9UKF6 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC0.82□□□□□ -2.28
CPSF3Q9UKF6 RNU7-73P-201ENST00000458743 63 ntBASIC0.82□□□□□ -2.28
CPSF3Q9UKF6 RNU6-1132P-201ENST00000459214 107 ntBASIC0.82□□□□□ -2.28
CPSF3Q9UKF6 RPS29P24-201ENST00000486345 171 ntBASIC0.82□□□□□ -2.28
CPSF3Q9UKF6 AC013244.2-201ENST00000603396 103 ntBASIC0.82□□□□□ -2.28
CPSF3Q9UKF6 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC0.81□□□□□ -2.28
CPSF3Q9UKF6 Y_RNA.23-201ENST00000362496 106 ntBASIC0.81□□□□□ -2.28
CPSF3Q9UKF6 RNU6-580P-201ENST00000365159 107 ntBASIC0.81□□□□□ -2.28
CPSF3Q9UKF6 SNORA1-201ENST00000384107 130 ntBASIC0.81□□□□□ -2.28
CPSF3Q9UKF6 U7.7-201ENST00000459276 60 ntBASIC0.81□□□□□ -2.28
CPSF3Q9UKF6 MTND1P19-201ENST00000511780 315 ntBASIC0.81□□□□□ -2.28
CPSF3Q9UKF6 RNU6-1045P-201ENST00000516321 107 ntBASIC0.81□□□□□ -2.28
CPSF3Q9UKF6 Y_RNA.116-201ENST00000363292 103 ntBASIC0.8□□□□□ -2.28
CPSF3Q9UKF6 MIR100-201ENST00000385259 80 ntBASIC0.8□□□□□ -2.28
CPSF3Q9UKF6 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC0.8□□□□□ -2.28
CPSF3Q9UKF6 AC244023.1-201ENST00000426884 112 ntBASIC0.8□□□□□ -2.28
CPSF3Q9UKF6 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC0.8□□□□□ -2.28
CPSF3Q9UKF6 snoU13.21-201ENST00000459368 105 ntBASIC0.8□□□□□ -2.28
CPSF3Q9UKF6 RNY3P16-201ENST00000516338 101 ntBASIC0.8□□□□□ -2.28
CPSF3Q9UKF6 RNU6-1110P-201ENST00000516462 101 ntBASIC0.8□□□□□ -2.28
CPSF3Q9UKF6 MIR4264-201ENST00000583520 66 ntBASIC0.8□□□□□ -2.28
CPSF3Q9UKF6 MIR4719-201ENST00000585233 84 ntBASIC0.8□□□□□ -2.28
CPSF3Q9UKF6 AP000753.3-201ENST00000604083 169 ntBASIC0.8□□□□□ -2.28
CPSF3Q9UKF6 AC242498.1-201ENST00000604134 111 ntBASIC0.8□□□□□ -2.28
CPSF3Q9UKF6 AL353765.1-201ENST00000605514 183 ntBASIC0.8□□□□□ -2.28
CPSF3Q9UKF6 MIR8055-201ENST00000610739 97 ntBASIC0.8□□□□□ -2.28
CPSF3Q9UKF6 7SK.10-201ENST00000621414 298 ntBASIC0.8□□□□□ -2.28
CPSF3Q9UKF6 MIR376A2-201ENST00000636782 80 ntBASIC0.8□□□□□ -2.28
CPSF3Q9UKF6 SNORD27-201ENST00000363981 72 ntBASIC0.79□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 240.1 ms