Protein–RNA interactions for Protein: Q9P1Q0

VPS54, Vacuolar protein sorting-associated protein 54, humanhuman

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54Q9P1Q0 RNA5SP121-201ENST00000516537 101 ntBASIC0.57□□□□□ -2.32
VPS54Q9P1Q0 RNU6-229P-201ENST00000516614 102 ntBASIC0.57□□□□□ -2.32
VPS54Q9P1Q0 SNORD36C-201ENST00000516733 66 ntBASIC0.57□□□□□ -2.32
VPS54Q9P1Q0 Y_RNA.701-201ENST00000516812 110 ntBASIC0.57□□□□□ -2.32
VPS54Q9P1Q0 RNU6-1270P-201ENST00000517128 108 ntBASIC0.57□□□□□ -2.32
VPS54Q9P1Q0 MIR4264-201ENST00000583520 66 ntBASIC0.57□□□□□ -2.32
VPS54Q9P1Q0 AP000942.4-201ENST00000604811 241 ntBASIC0.57□□□□□ -2.32
VPS54Q9P1Q0 SNORA33.2-201ENST00000365413 134 ntBASIC0.56□□□□□ -2.32
VPS54Q9P1Q0 SNORA36.2-201ENST00000384004 127 ntBASIC0.56□□□□□ -2.32
VPS54Q9P1Q0 SNORA8.3-201ENST00000384679 139 ntBASIC0.56□□□□□ -2.32
VPS54Q9P1Q0 MIR548A2-201ENST00000384956 97 ntBASIC0.56□□□□□ -2.32
VPS54Q9P1Q0 MIR626-201ENST00000385032 94 ntBASIC0.56□□□□□ -2.32
VPS54Q9P1Q0 RNU6ATAC6P-201ENST00000408132 126 ntBASIC0.56□□□□□ -2.32
VPS54Q9P1Q0 AC092628.1-201ENST00000436250 252 ntBASIC0.56□□□□□ -2.32
VPS54Q9P1Q0 snoU13.18-201ENST00000459483 104 ntBASIC0.56□□□□□ -2.32
VPS54Q9P1Q0 RNU6-977P-201ENST00000516411 103 ntBASIC0.56□□□□□ -2.32
VPS54Q9P1Q0 RNU4-54P-201ENST00000516428 129 ntBASIC0.56□□□□□ -2.32
VPS54Q9P1Q0 RNU6-365P-201ENST00000517113 106 ntBASIC0.56□□□□□ -2.32
VPS54Q9P1Q0 Y_RNA.275-201ENST00000364726 110 ntBASIC0.55□□□□□ -2.32
VPS54Q9P1Q0 SNORD24-201ENST00000383884 75 ntBASIC0.55□□□□□ -2.32
VPS54Q9P1Q0 RNY1P8-201ENST00000383970 114 ntBASIC0.55□□□□□ -2.32
VPS54Q9P1Q0 SNORA27-201ENST00000384323 126 ntBASIC0.55□□□□□ -2.32
VPS54Q9P1Q0 MT-TT-201ENST00000387460 66 ntBASIC0.55□□□□□ -2.32
VPS54Q9P1Q0 AC113618.1-201ENST00000416747 285 ntBASIC0.55□□□□□ -2.32
VPS54Q9P1Q0 HMGN1P33-201ENST00000432945 451 ntBASIC0.55□□□□□ -2.32
VPS54Q9P1Q0 MTCYBP6-201ENST00000441810 138 ntBASIC0.55□□□□□ -2.32
VPS54Q9P1Q0 RNU6-1132P-201ENST00000459214 107 ntBASIC0.55□□□□□ -2.32
VPS54Q9P1Q0 RNU6-1153P-201ENST00000516760 105 ntBASIC0.55□□□□□ -2.32
VPS54Q9P1Q0 MIR4771-2-201ENST00000577758 74 ntBASIC0.55□□□□□ -2.32
VPS54Q9P1Q0 MIR5688-201ENST00000580619 83 ntBASIC0.55□□□□□ -2.32
VPS54Q9P1Q0 MIR4771-1-201ENST00000582617 74 ntBASIC0.55□□□□□ -2.32
VPS54Q9P1Q0 MIR8055-201ENST00000610739 97 ntBASIC0.55□□□□□ -2.32
VPS54Q9P1Q0 uc_338.6-201ENST00000613544 171 ntBASIC0.55□□□□□ -2.32
VPS54Q9P1Q0 MIR6513-201ENST00000621188 64 ntBASIC0.55□□□□□ -2.32
VPS54Q9P1Q0 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.55□□□□□ -2.32
VPS54Q9P1Q0 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC0.55□□□□□ -2.32
VPS54Q9P1Q0 RNU6-740P-201ENST00000364734 105 ntBASIC0.54□□□□□ -2.32
VPS54Q9P1Q0 RNU6-639P-201ENST00000384074 107 ntBASIC0.54□□□□□ -2.32
VPS54Q9P1Q0 Y_RNA.512-201ENST00000384518 102 ntBASIC0.54□□□□□ -2.32
VPS54Q9P1Q0 SNORD38B-201ENST00000384690 67 ntBASIC0.54□□□□□ -2.32
VPS54Q9P1Q0 MIR520F-201ENST00000384824 87 ntBASIC0.54□□□□□ -2.32
VPS54Q9P1Q0 MIR520H-201ENST00000385126 88 ntBASIC0.54□□□□□ -2.32
VPS54Q9P1Q0 RNU6-651P-201ENST00000411040 105 ntBASIC0.54□□□□□ -2.32
VPS54Q9P1Q0 AF228730.3-201ENST00000436691 102 ntBASIC0.54□□□□□ -2.32
VPS54Q9P1Q0 AL138752.1-201ENST00000452964 351 ntBASIC0.54□□□□□ -2.32
VPS54Q9P1Q0 AL353742.1-201ENST00000453455 224 ntTSL 3 BASIC0.54□□□□□ -2.32
VPS54Q9P1Q0 RNU7-73P-201ENST00000458743 63 ntBASIC0.54□□□□□ -2.32
VPS54Q9P1Q0 RNU7-62P-201ENST00000458856 62 ntBASIC0.54□□□□□ -2.32
VPS54Q9P1Q0 MIR6515-201ENST00000619843 57 ntBASIC0.54□□□□□ -2.32
VPS54Q9P1Q0 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC0.54□□□□□ -2.32
VPS54Q9P1Q0 SNORD38B-202ENST00000625943 69 ntBASIC0.54□□□□□ -2.32
VPS54Q9P1Q0 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC0.53□□□□□ -2.32
VPS54Q9P1Q0 RNU6-888P-201ENST00000363010 101 ntBASIC0.53□□□□□ -2.32
VPS54Q9P1Q0 RPS29P24-201ENST00000486345 171 ntBASIC0.53□□□□□ -2.32
VPS54Q9P1Q0 RNU6-504P-201ENST00000516568 104 ntBASIC0.53□□□□□ -2.32
VPS54Q9P1Q0 AC020891.4-201ENST00000605745 93 ntBASIC0.53□□□□□ -2.32
VPS54Q9P1Q0 uc_338.17-201ENST00000619633 179 ntBASIC0.53□□□□□ -2.32
VPS54Q9P1Q0 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC0.53□□□□□ -2.32
VPS54Q9P1Q0 Y_RNA.44-201ENST00000362676 108 ntBASIC0.52□□□□□ -2.33
VPS54Q9P1Q0 Y_RNA.91-201ENST00000363042 107 ntBASIC0.52□□□□□ -2.33
VPS54Q9P1Q0 RNU6-1309P-201ENST00000363305 108 ntBASIC0.52□□□□□ -2.33
VPS54Q9P1Q0 Y_RNA.237-201ENST00000364439 102 ntBASIC0.52□□□□□ -2.33
VPS54Q9P1Q0 RNU6-945P-201ENST00000383947 107 ntBASIC0.52□□□□□ -2.33
VPS54Q9P1Q0 RNU6-1109P-201ENST00000391187 107 ntBASIC0.52□□□□□ -2.33
VPS54Q9P1Q0 Y_RNA.622-201ENST00000411091 108 ntBASIC0.52□□□□□ -2.33
VPS54Q9P1Q0 SNRPGP8-201ENST00000454064 226 ntBASIC0.52□□□□□ -2.33
VPS54Q9P1Q0 TRBVB-201ENST00000477100 408 ntBASIC0.52□□□□□ -2.33
VPS54Q9P1Q0 RNU6-1299P-201ENST00000516316 100 ntBASIC0.52□□□□□ -2.33
VPS54Q9P1Q0 AC018659.1-201ENST00000551083 169 ntBASIC0.52□□□□□ -2.33
VPS54Q9P1Q0 MIR4804-201ENST00000581683 73 ntBASIC0.52□□□□□ -2.33
VPS54Q9P1Q0 MIR4676-201ENST00000583078 72 ntBASIC0.52□□□□□ -2.33
VPS54Q9P1Q0 AP001282.2-201ENST00000616149 309 ntBASIC0.52□□□□□ -2.33
VPS54Q9P1Q0 MIR6740-201ENST00000618268 113 ntBASIC0.52□□□□□ -2.33
VPS54Q9P1Q0 Y_RNA.66-201ENST00000362862 102 ntBASIC0.51□□□□□ -2.33
VPS54Q9P1Q0 Y_RNA.634-201ENST00000364811 113 ntBASIC0.51□□□□□ -2.33
VPS54Q9P1Q0 MIR573-201ENST00000384964 99 ntBASIC0.51□□□□□ -2.33
VPS54Q9P1Q0 RNU2-70P-201ENST00000410718 179 ntBASIC0.51□□□□□ -2.33
VPS54Q9P1Q0 RNU6-1190P-201ENST00000410811 104 ntBASIC0.51□□□□□ -2.33
VPS54Q9P1Q0 AC114737.2-201ENST00000421583 173 ntBASIC0.51□□□□□ -2.33
VPS54Q9P1Q0 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC0.51□□□□□ -2.33
VPS54Q9P1Q0 RNU7-53P-201ENST00000516705 60 ntBASIC0.51□□□□□ -2.33
VPS54Q9P1Q0 RNU6-453P-201ENST00000516819 85 ntBASIC0.51□□□□□ -2.33
VPS54Q9P1Q0 AC044792.1-201ENST00000593294 196 ntBASIC0.51□□□□□ -2.33
VPS54Q9P1Q0 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.51□□□□□ -2.33
VPS54Q9P1Q0 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.51□□□□□ -2.33
VPS54Q9P1Q0 Z97988.1-201ENST00000637697 135 ntBASIC0.51□□□□□ -2.33
VPS54Q9P1Q0 MIR342-201ENST00000362212 99 ntBASIC0.5□□□□□ -2.33
VPS54Q9P1Q0 Y_RNA.7-201ENST00000362352 102 ntBASIC0.5□□□□□ -2.33
VPS54Q9P1Q0 snoU2_19.4-201ENST00000364329 80 ntBASIC0.5□□□□□ -2.33
VPS54Q9P1Q0 RNU6-484P-201ENST00000384016 107 ntBASIC0.5□□□□□ -2.33
VPS54Q9P1Q0 MIR588-201ENST00000384900 83 ntBASIC0.5□□□□□ -2.33
VPS54Q9P1Q0 RNU6-126P-201ENST00000516685 103 ntBASIC0.5□□□□□ -2.33
VPS54Q9P1Q0 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC0.5□□□□□ -2.33
VPS54Q9P1Q0 AC015818.4-201ENST00000580931 353 ntTSL 5 BASIC0.5□□□□□ -2.33
VPS54Q9P1Q0 AC010332.2-201ENST00000613083 1904 ntBASIC0.5□□□□□ -2.33
VPS54Q9P1Q0 RNU6-238P-201ENST00000363313 106 ntBASIC0.49□□□□□ -2.33
VPS54Q9P1Q0 SNORA1.1-201ENST00000364671 133 ntBASIC0.49□□□□□ -2.33
VPS54Q9P1Q0 RNU6-1237P-201ENST00000384777 107 ntBASIC0.49□□□□□ -2.33
VPS54Q9P1Q0 RNU6-1228P-201ENST00000391014 107 ntBASIC0.49□□□□□ -2.33
VPS54Q9P1Q0 RNU2-55P-201ENST00000411146 174 ntBASIC0.49□□□□□ -2.33
Retrieved 100 of 98,524 protein–RNA pairs in 108.6 ms