Protein–RNA interactions for Protein: Q9H2Z4

NKX2-4, Homeobox protein Nkx-2.4, humanhuman

Predictions only

Length 354 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-4Q9H2Z4 Y_RNA.81-201ENST00000362997 102 ntBASIC2.19□□□□□ -2.06
NKX2-4Q9H2Z4 SNORA16B-201ENST00000364674 135 ntBASIC2.19□□□□□ -2.06
NKX2-4Q9H2Z4 Y_RNA.370-201ENST00000365589 108 ntBASIC2.19□□□□□ -2.06
NKX2-4Q9H2Z4 MIRLET7F2-201ENST00000385277 83 ntBASIC2.19□□□□□ -2.06
NKX2-4Q9H2Z4 MIR548A3-201ENST00000385297 97 ntBASIC2.19□□□□□ -2.06
NKX2-4Q9H2Z4 RNA5SP181-201ENST00000410246 98 ntBASIC2.19□□□□□ -2.06
NKX2-4Q9H2Z4 RNA5SP136-201ENST00000410906 107 ntBASIC2.19□□□□□ -2.06
NKX2-4Q9H2Z4 AL035398.1-201ENST00000430869 322 ntBASIC2.19□□□□□ -2.06
NKX2-4Q9H2Z4 RNU6-919P-201ENST00000516731 104 ntBASIC2.19□□□□□ -2.06
NKX2-4Q9H2Z4 SNORA31.15-201ENST00000516771 132 ntBASIC2.19□□□□□ -2.06
NKX2-4Q9H2Z4 AL670379.3-201ENST00000605040 251 ntBASIC2.19□□□□□ -2.06
NKX2-4Q9H2Z4 SAMD9L-201ENST00000318238 7134 ntAPPRIS P1 TSL 1 (best) BASIC2.19□□□□□ -2.06
NKX2-4Q9H2Z4 RNY1P10-201ENST00000363268 113 ntBASIC2.18□□□□□ -2.06
NKX2-4Q9H2Z4 RNA5SP190-201ENST00000365222 118 ntBASIC2.18□□□□□ -2.06
NKX2-4Q9H2Z4 SNORA70.7-201ENST00000384159 133 ntBASIC2.18□□□□□ -2.06
NKX2-4Q9H2Z4 Y_RNA.494-201ENST00000384432 111 ntBASIC2.18□□□□□ -2.06
NKX2-4Q9H2Z4 Y_RNA.528-201ENST00000384575 108 ntBASIC2.18□□□□□ -2.06
NKX2-4Q9H2Z4 SNORA48.3-201ENST00000391081 134 ntBASIC2.18□□□□□ -2.06
NKX2-4Q9H2Z4 SNORD123-201ENST00000459473 70 ntBASIC2.18□□□□□ -2.06
NKX2-4Q9H2Z4 RNU6-998P-201ENST00000515894 101 ntBASIC2.18□□□□□ -2.06
NKX2-4Q9H2Z4 SUMO2P16-201ENST00000519475 264 ntBASIC2.18□□□□□ -2.06
NKX2-4Q9H2Z4 AL359821.1-201ENST00000605519 182 ntBASIC2.18□□□□□ -2.06
NKX2-4Q9H2Z4 MIR6129-201ENST00000616087 109 ntBASIC2.18□□□□□ -2.06
NKX2-4Q9H2Z4 AC106754.2-201ENST00000623006 233 ntBASIC2.18□□□□□ -2.06
NKX2-4Q9H2Z4 MIR203B-201ENST00000636080 86 ntBASIC2.18□□□□□ -2.06
NKX2-4Q9H2Z4 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC2.18□□□□□ -2.06
NKX2-4Q9H2Z4 MTND5P18-201ENST00000445624 1801 ntBASIC2.17□□□□□ -2.06
NKX2-4Q9H2Z4 AP000648.3-201ENST00000623539 4507 ntBASIC2.17□□□□□ -2.06
NKX2-4Q9H2Z4 AC004965.1-201ENST00000413033 213 ntBASIC2.17□□□□□ -2.06
NKX2-4Q9H2Z4 AL035461.1-201ENST00000421490 332 ntBASIC2.17□□□□□ -2.06
NKX2-4Q9H2Z4 AC021443.1-201ENST00000604478 211 ntBASIC2.17□□□□□ -2.06
NKX2-4Q9H2Z4 AL773524.1-201ENST00000614065 229 ntBASIC2.17□□□□□ -2.06
NKX2-4Q9H2Z4 EYS-211ENST00000503581 10589 ntAPPRIS P3 TSL 5 BASIC2.17□□□□□ -2.06
NKX2-4Q9H2Z4 RNU6-661P-201ENST00000362409 107 ntBASIC2.16□□□□□ -2.06
NKX2-4Q9H2Z4 Y_RNA.116-201ENST00000363292 103 ntBASIC2.16□□□□□ -2.06
NKX2-4Q9H2Z4 MIR518E-201ENST00000385252 88 ntBASIC2.16□□□□□ -2.06
NKX2-4Q9H2Z4 AC244636.1-201ENST00000421152 228 ntBASIC2.16□□□□□ -2.06
NKX2-4Q9H2Z4 RNU7-67P-201ENST00000459003 62 ntBASIC2.16□□□□□ -2.06
NKX2-4Q9H2Z4 RNU6ATAC9P-201ENST00000516210 116 ntBASIC2.16□□□□□ -2.06
NKX2-4Q9H2Z4 MIR4446-201ENST00000578505 67 ntBASIC2.16□□□□□ -2.06
NKX2-4Q9H2Z4 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC2.16□□□□□ -2.06
NKX2-4Q9H2Z4 WWP1P1-201ENST00000466609 2769 ntBASIC2.15□□□□□ -2.06
NKX2-4Q9H2Z4 SNORA6-201ENST00000384033 151 ntBASIC2.15□□□□□ -2.07
NKX2-4Q9H2Z4 RNU6-429P-201ENST00000384582 108 ntBASIC2.15□□□□□ -2.07
NKX2-4Q9H2Z4 RNU6-1067P-201ENST00000384752 107 ntBASIC2.15□□□□□ -2.07
NKX2-4Q9H2Z4 MIR194-1-201ENST00000384892 85 ntBASIC2.15□□□□□ -2.07
NKX2-4Q9H2Z4 RNU4-62P-201ENST00000410125 130 ntBASIC2.15□□□□□ -2.07
NKX2-4Q9H2Z4 AC003989.2-201ENST00000440224 169 ntBASIC2.15□□□□□ -2.07
NKX2-4Q9H2Z4 JTBP1-201ENST00000441314 247 ntBASIC2.15□□□□□ -2.07
NKX2-4Q9H2Z4 RPL23AP6-201ENST00000446637 472 ntBASIC2.15□□□□□ -2.07
NKX2-4Q9H2Z4 Y_RNA.649-201ENST00000459077 103 ntBASIC2.15□□□□□ -2.07
NKX2-4Q9H2Z4 RNU2-11P-201ENST00000459191 187 ntBASIC2.15□□□□□ -2.07
NKX2-4Q9H2Z4 SNORA25.15-201ENST00000516487 89 ntBASIC2.15□□□□□ -2.07
NKX2-4Q9H2Z4 MIR548AR-201ENST00000582191 57 ntBASIC2.15□□□□□ -2.07
NKX2-4Q9H2Z4 SENP7-206ENST00000394094 4703 ntAPPRIS ALT2 TSL 1 (best) BASIC2.15□□□□□ -2.07
NKX2-4Q9H2Z4 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC2.14□□□□□ -2.07
NKX2-4Q9H2Z4 RNU4-16P-201ENST00000364737 141 ntBASIC2.14□□□□□ -2.07
NKX2-4Q9H2Z4 RNU6-439P-201ENST00000384188 106 ntBASIC2.14□□□□□ -2.07
NKX2-4Q9H2Z4 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC2.14□□□□□ -2.07
NKX2-4Q9H2Z4 SNORD28B-201ENST00000390993 75 ntBASIC2.14□□□□□ -2.07
NKX2-4Q9H2Z4 RNU7-164P-201ENST00000459221 62 ntBASIC2.14□□□□□ -2.07
NKX2-4Q9H2Z4 COX6CP6-201ENST00000490840 228 ntBASIC2.14□□□□□ -2.07
NKX2-4Q9H2Z4 AC095038.3-201ENST00000634439 195 ntBASIC2.14□□□□□ -2.07
NKX2-4Q9H2Z4 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC2.14□□□□□ -2.07
NKX2-4Q9H2Z4 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC2.14□□□□□ -2.07
NKX2-4Q9H2Z4 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC2.14□□□□□ -2.07
NKX2-4Q9H2Z4 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC2.14□□□□□ -2.07
NKX2-4Q9H2Z4 RNA5SP259-201ENST00000365541 109 ntBASIC2.13□□□□□ -2.07
NKX2-4Q9H2Z4 RNU6-44P-201ENST00000384045 107 ntBASIC2.13□□□□□ -2.07
NKX2-4Q9H2Z4 SNORD116-21-201ENST00000384507 92 ntBASIC2.13□□□□□ -2.07
NKX2-4Q9H2Z4 AP1B1P2-201ENST00000416196 106 ntBASIC2.13□□□□□ -2.07
NKX2-4Q9H2Z4 RPS29P29-201ENST00000456396 171 ntBASIC2.13□□□□□ -2.07
NKX2-4Q9H2Z4 RNU6-322P-201ENST00000516010 103 ntBASIC2.13□□□□□ -2.07
NKX2-4Q9H2Z4 RNU6-917P-201ENST00000516294 104 ntBASIC2.13□□□□□ -2.07
NKX2-4Q9H2Z4 RNY4P20-201ENST00000516678 93 ntBASIC2.13□□□□□ -2.07
NKX2-4Q9H2Z4 RNU7-53P-201ENST00000516705 60 ntBASIC2.13□□□□□ -2.07
NKX2-4Q9H2Z4 RNU6-958P-201ENST00000516995 106 ntBASIC2.13□□□□□ -2.07
NKX2-4Q9H2Z4 SNORA74.3-201ENST00000517108 154 ntBASIC2.13□□□□□ -2.07
NKX2-4Q9H2Z4 RNA5SP402-201ENST00000517148 110 ntBASIC2.13□□□□□ -2.07
NKX2-4Q9H2Z4 SNRPGP19-201ENST00000603826 189 ntBASIC2.13□□□□□ -2.07
NKX2-4Q9H2Z4 AL049779.4-201ENST00000604500 156 ntBASIC2.13□□□□□ -2.07
NKX2-4Q9H2Z4 FO624990.1-201ENST00000636373 85 ntBASIC2.13□□□□□ -2.07
NKX2-4Q9H2Z4 AC005336.3-201ENST00000623833 2679 ntBASIC2.13□□□□□ -2.07
NKX2-4Q9H2Z4 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC2.13□□□□□ -2.07
NKX2-4Q9H2Z4 LCORL-202ENST00000382224 4984 ntAPPRIS ALT2 TSL 5 BASIC2.12□□□□□ -2.07
NKX2-4Q9H2Z4 MIR548A1-201ENST00000385041 97 ntBASIC2.12□□□□□ -2.07
NKX2-4Q9H2Z4 MIR513A1-201ENST00000385138 129 ntBASIC2.12□□□□□ -2.07
NKX2-4Q9H2Z4 MIR4713-201ENST00000582691 75 ntBASIC2.12□□□□□ -2.07
NKX2-4Q9H2Z4 MIR4305-201ENST00000583252 102 ntBASIC2.12□□□□□ -2.07
NKX2-4Q9H2Z4 HSPE1P19-201ENST00000603327 295 ntBASIC2.12□□□□□ -2.07
NKX2-4Q9H2Z4 AC243994.1-201ENST00000618627 109 ntBASIC2.12□□□□□ -2.07
NKX2-4Q9H2Z4 RGPD1-204ENST00000559485 5247 ntAPPRIS P2 TSL 1 (best) BASIC2.12□□□□□ -2.07
NKX2-4Q9H2Z4 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC2.12□□□□□ -2.07
NKX2-4Q9H2Z4 AL391516.1-201ENST00000554380 2449 ntBASIC2.11□□□□□ -2.07
NKX2-4Q9H2Z4 AC003984.1-201ENST00000450977 4104 ntTSL 1 (best) BASIC2.11□□□□□ -2.07
NKX2-4Q9H2Z4 Y_RNA.298-201ENST00000364960 107 ntBASIC2.11□□□□□ -2.07
NKX2-4Q9H2Z4 AL161935.2-201ENST00000414627 60 ntBASIC2.11□□□□□ -2.07
NKX2-4Q9H2Z4 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC2.11□□□□□ -2.07
NKX2-4Q9H2Z4 RNU2-13P-201ENST00000515909 113 ntBASIC2.11□□□□□ -2.07
NKX2-4Q9H2Z4 RNU7-43P-201ENST00000516554 64 ntBASIC2.11□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 246.1 ms