Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 RNU6-181P-201ENST00000363225 107 ntBASIC-1.15□□□□□ -2.59
USF3Q68DE3 Y_RNA.228-201ENST00000364346 98 ntBASIC-1.15□□□□□ -2.59
USF3Q68DE3 AC097635.1-201ENST00000450678 155 ntBASIC-1.15□□□□□ -2.59
USF3Q68DE3 RNU6-531P-201ENST00000516694 104 ntBASIC-1.15□□□□□ -2.59
USF3Q68DE3 RNU6-445P-201ENST00000516949 107 ntBASIC-1.15□□□□□ -2.59
USF3Q68DE3 MIR2681-201ENST00000581814 105 ntBASIC-1.15□□□□□ -2.59
USF3Q68DE3 AC006927.3-201ENST00000638789 384 ntBASIC-1.15□□□□□ -2.59
USF3Q68DE3 Y_RNA.785-201ENST00000384290 109 ntBASIC-1.15□□□□□ -2.59
USF3Q68DE3 AC073415.1-201ENST00000449240 153 ntBASIC-1.15□□□□□ -2.59
USF3Q68DE3 Y_RNA.715-201ENST00000517082 110 ntBASIC-1.15□□□□□ -2.59
USF3Q68DE3 MIR4424-201ENST00000585257 86 ntBASIC-1.15□□□□□ -2.59
USF3Q68DE3 AC022441.3-201ENST00000605737 136 ntBASIC-1.15□□□□□ -2.59
USF3Q68DE3 RNU7-10P-201ENST00000607194 63 ntBASIC-1.15□□□□□ -2.59
USF3Q68DE3 MIR6717-201ENST00000622747 73 ntBASIC-1.15□□□□□ -2.59
USF3Q68DE3 RNA5SP133-201ENST00000363368 119 ntBASIC-1.16□□□□□ -2.59
USF3Q68DE3 RNY1P13-201ENST00000365030 105 ntBASIC-1.16□□□□□ -2.59
USF3Q68DE3 MIR147A-201ENST00000385079 72 ntBASIC-1.16□□□□□ -2.59
USF3Q68DE3 AC091951.2-201ENST00000500762 203 ntBASIC-1.16□□□□□ -2.59
USF3Q68DE3 RNU6-1012P-201ENST00000516606 109 ntBASIC-1.16□□□□□ -2.59
USF3Q68DE3 AC141846.1-201ENST00000568348 142 ntBASIC-1.16□□□□□ -2.59
USF3Q68DE3 AC092378.2-202ENST00000569328 445 ntTSL 3 BASIC-1.16□□□□□ -2.59
USF3Q68DE3 AC073534.2-201ENST00000620377 381 ntBASIC-1.16□□□□□ -2.59
USF3Q68DE3 RNA5SP403-201ENST00000363598 108 ntBASIC-1.16□□□□□ -2.6
USF3Q68DE3 Y_RNA.232-201ENST00000364369 96 ntBASIC-1.16□□□□□ -2.6
USF3Q68DE3 RNU6-1310P-201ENST00000384153 107 ntBASIC-1.16□□□□□ -2.6
USF3Q68DE3 AC063965.1-201ENST00000416679 499 ntTSL 3 BASIC-1.16□□□□□ -2.6
USF3Q68DE3 MTND1P27-201ENST00000451117 902 ntBASIC-1.16□□□□□ -2.6
USF3Q68DE3 MCHR2-AS1-203ENST00000451220 429 ntTSL 3 BASIC-1.16□□□□□ -2.6
USF3Q68DE3 RNU7-116P-201ENST00000516940 62 ntBASIC-1.16□□□□□ -2.6
USF3Q68DE3 SNORA40.17-201ENST00000517256 115 ntBASIC-1.16□□□□□ -2.6
USF3Q68DE3 AC127455.1-201ENST00000565496 145 ntBASIC-1.16□□□□□ -2.6
USF3Q68DE3 RNU6-456P-201ENST00000384493 107 ntBASIC-1.17□□□□□ -2.6
USF3Q68DE3 ACA59.1-201ENST00000515966 143 ntBASIC-1.17□□□□□ -2.6
USF3Q68DE3 RNU7-13P-201ENST00000516413 62 ntBASIC-1.17□□□□□ -2.6
USF3Q68DE3 DEFB131B-201ENST00000530210 213 ntAPPRIS P1 TSL 1 (best) BASIC-1.17□□□□□ -2.6
USF3Q68DE3 AL080274.1-201ENST00000605565 220 ntBASIC-1.17□□□□□ -2.6
USF3Q68DE3 RNU6-653P-201ENST00000363074 106 ntBASIC-1.17□□□□□ -2.6
USF3Q68DE3 Y_RNA.114-201ENST00000363265 113 ntBASIC-1.17□□□□□ -2.6
USF3Q68DE3 RNU5E-5P-201ENST00000365379 116 ntBASIC-1.17□□□□□ -2.6
USF3Q68DE3 MTCYBP8-201ENST00000422855 651 ntBASIC-1.17□□□□□ -2.6
USF3Q68DE3 RNU7-180P-201ENST00000459240 63 ntBASIC-1.17□□□□□ -2.6
USF3Q68DE3 Y_RNA.631-201ENST00000459607 101 ntBASIC-1.17□□□□□ -2.6
USF3Q68DE3 RNU6-276P-201ENST00000516114 96 ntBASIC-1.17□□□□□ -2.6
USF3Q68DE3 AC100767.1-201ENST00000528178 123 ntBASIC-1.17□□□□□ -2.6
USF3Q68DE3 AL354950.2-201ENST00000617939 290 ntBASIC-1.17□□□□□ -2.6
USF3Q68DE3 RNU4-92P-201ENST00000363783 136 ntBASIC-1.18□□□□□ -2.6
USF3Q68DE3 RNU6-961P-201ENST00000363893 105 ntBASIC-1.18□□□□□ -2.6
USF3Q68DE3 RNU6-1082P-201ENST00000364574 107 ntBASIC-1.18□□□□□ -2.6
USF3Q68DE3 SNORD115-35-201ENST00000365122 82 ntBASIC-1.18□□□□□ -2.6
USF3Q68DE3 Y_RNA.378-201ENST00000365652 113 ntBASIC-1.18□□□□□ -2.6
USF3Q68DE3 RNU6-154P-201ENST00000384306 106 ntBASIC-1.18□□□□□ -2.6
USF3Q68DE3 SNORA18-201ENST00000384416 132 ntBASIC-1.18□□□□□ -2.6
USF3Q68DE3 MIR517A-201ENST00000385001 87 ntBASIC-1.18□□□□□ -2.6
USF3Q68DE3 AC098614.3-201ENST00000438957 440 ntBASIC-1.18□□□□□ -2.6
USF3Q68DE3 SNORA19.3-201ENST00000516165 130 ntBASIC-1.18□□□□□ -2.6
USF3Q68DE3 AC100801.1-202ENST00000518266 371 ntTSL 3 BASIC-1.18□□□□□ -2.6
USF3Q68DE3 AC122108.2-201ENST00000611946 526 ntBASIC-1.18□□□□□ -2.6
USF3Q68DE3 ST7-OT4_4.1-201ENST00000614993 213 ntBASIC-1.18□□□□□ -2.6
USF3Q68DE3 RNU6-1209P-201ENST00000363655 107 ntBASIC-1.19□□□□□ -2.6
USF3Q68DE3 Y_RNA.310-201ENST00000365063 113 ntBASIC-1.19□□□□□ -2.6
USF3Q68DE3 Y_RNA.446-201ENST00000384178 104 ntBASIC-1.19□□□□□ -2.6
USF3Q68DE3 Y_RNA.456-201ENST00000384232 111 ntBASIC-1.19□□□□□ -2.6
USF3Q68DE3 MTATP6P13-201ENST00000438531 667 ntBASIC-1.19□□□□□ -2.6
USF3Q68DE3 UBE2V1P7-201ENST00000446395 340 ntBASIC-1.19□□□□□ -2.6
USF3Q68DE3 RNU7-53P-201ENST00000516705 60 ntBASIC-1.19□□□□□ -2.6
USF3Q68DE3 AL138960.2-201ENST00000625145 535 ntBASIC-1.19□□□□□ -2.6
USF3Q68DE3 SATB1-AS1-243ENST00000627546 589 ntTSL 5 BASIC-1.19□□□□□ -2.6
USF3Q68DE3 MIR342-201ENST00000362212 99 ntBASIC-1.19□□□□□ -2.6
USF3Q68DE3 RNU6-931P-201ENST00000363850 107 ntBASIC-1.19□□□□□ -2.6
USF3Q68DE3 Y_RNA.204-201ENST00000364112 102 ntBASIC-1.19□□□□□ -2.6
USF3Q68DE3 SNORD114-17-201ENST00000364699 75 ntBASIC-1.19□□□□□ -2.6
USF3Q68DE3 RNU2-14P-201ENST00000411053 191 ntBASIC-1.19□□□□□ -2.6
USF3Q68DE3 RNU6-732P-201ENST00000516033 103 ntBASIC-1.19□□□□□ -2.6
USF3Q68DE3 RN7SKP299-201ENST00000606679 301 ntBASIC-1.19□□□□□ -2.6
USF3Q68DE3 MIR6818-201ENST00000621576 65 ntBASIC-1.19□□□□□ -2.6
USF3Q68DE3 MIR302B-201ENST00000362188 73 ntBASIC-1.2□□□□□ -2.6
USF3Q68DE3 RNY4P7-201ENST00000364600 96 ntBASIC-1.2□□□□□ -2.6
USF3Q68DE3 RNU6-790P-201ENST00000384479 105 ntBASIC-1.2□□□□□ -2.6
USF3Q68DE3 RNU6-880P-201ENST00000384526 107 ntBASIC-1.2□□□□□ -2.6
USF3Q68DE3 Y_RNA.637-201ENST00000459424 114 ntBASIC-1.2□□□□□ -2.6
USF3Q68DE3 AC008243.1-201ENST00000504955 389 ntTSL 3 BASIC-1.2□□□□□ -2.6
USF3Q68DE3 CCDC34P1-201ENST00000507441 517 ntBASIC-1.2□□□□□ -2.6
USF3Q68DE3 RNU6-983P-201ENST00000516004 103 ntBASIC-1.2□□□□□ -2.6
USF3Q68DE3 AC008536.2-201ENST00000607284 349 ntBASIC-1.2□□□□□ -2.6
USF3Q68DE3 MIR6502-201ENST00000617296 76 ntBASIC-1.2□□□□□ -2.6
USF3Q68DE3 Y_RNA.497-201ENST00000384447 98 ntBASIC-1.2□□□□□ -2.6
USF3Q68DE3 ZRANB2-AS2-201ENST00000411721 518 ntTSL 3 BASIC-1.2□□□□□ -2.6
USF3Q68DE3 AL356010.1-201ENST00000456364 102 ntBASIC-1.2□□□□□ -2.6
USF3Q68DE3 SNORD42A-201ENST00000459584 64 ntBASIC-1.2□□□□□ -2.6
USF3Q68DE3 TRAJ51-201ENST00000504127 63 ntBASIC-1.2□□□□□ -2.6
USF3Q68DE3 RNU6-1332P-201ENST00000516666 104 ntBASIC-1.2□□□□□ -2.6
USF3Q68DE3 YWHAEP2-201ENST00000580066 112 ntBASIC-1.2□□□□□ -2.6
USF3Q68DE3 AL357078.3-201ENST00000607528 618 ntBASIC-1.2□□□□□ -2.6
USF3Q68DE3 MIR335-201ENST00000362173 94 ntBASIC-1.21□□□□□ -2.6
USF3Q68DE3 RNU6-660P-201ENST00000364566 109 ntBASIC-1.21□□□□□ -2.6
USF3Q68DE3 RNY4P34-201ENST00000364779 95 ntBASIC-1.21□□□□□ -2.6
USF3Q68DE3 RNU6-1201P-201ENST00000384227 107 ntBASIC-1.21□□□□□ -2.6
USF3Q68DE3 RNU6-83P-201ENST00000384568 112 ntBASIC-1.21□□□□□ -2.6
USF3Q68DE3 RNU6-429P-201ENST00000384582 108 ntBASIC-1.21□□□□□ -2.6
USF3Q68DE3 RNU6-1257P-201ENST00000384625 110 ntBASIC-1.21□□□□□ -2.6
Retrieved 100 of 98,524 protein–RNA pairs in 108.4 ms