Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 DEFB122-202ENST00000569013 197 ntBASIC2.24□□□□□ -2.05
RNF4P78317 AL137847.3-201ENST00000611521 109 ntBASIC2.24□□□□□ -2.05
RNF4P78317 ATP11C-201ENST00000327569 6115 ntAPPRIS P3 TSL 1 (best) BASIC2.24□□□□□ -2.05
RNF4P78317 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC2.24□□□□□ -2.05
RNF4P78317 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC2.24□□□□□ -2.05
RNF4P78317 RNU6-1123P-201ENST00000362347 106 ntBASIC2.23□□□□□ -2.05
RNF4P78317 RNU6-1319P-201ENST00000390855 104 ntBASIC2.23□□□□□ -2.05
RNF4P78317 RNU6-747P-201ENST00000390928 104 ntBASIC2.23□□□□□ -2.05
RNF4P78317 RNU6-241P-201ENST00000391148 104 ntBASIC2.23□□□□□ -2.05
RNF4P78317 RNU6-177P-201ENST00000411257 104 ntBASIC2.23□□□□□ -2.05
RNF4P78317 RNA5SP281-201ENST00000516504 135 ntBASIC2.23□□□□□ -2.05
RNF4P78317 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC2.23□□□□□ -2.05
RNF4P78317 MIR5009-201ENST00000578736 100 ntBASIC2.23□□□□□ -2.05
RNF4P78317 SNORD53-201ENST00000579969 78 ntBASIC2.23□□□□□ -2.05
RNF4P78317 AL020996.3-201ENST00000606617 222 ntBASIC2.23□□□□□ -2.05
RNF4P78317 RNU6-94P-201ENST00000607728 107 ntBASIC2.23□□□□□ -2.05
RNF4P78317 MIR1291-201ENST00000627649 87 ntBASIC2.23□□□□□ -2.05
RNF4P78317 TXLNGY-201ENST00000253320 7299 ntTSL 2 BASIC2.23□□□□□ -2.05
RNF4P78317 AC016717.2-201ENST00000609089 5141 ntBASIC2.22□□□□□ -2.05
RNF4P78317 RNU6-1255P-201ENST00000363434 112 ntBASIC2.22□□□□□ -2.05
RNF4P78317 SNORA16B-201ENST00000364674 135 ntBASIC2.22□□□□□ -2.05
RNF4P78317 SNORA51.10-201ENST00000384418 136 ntBASIC2.22□□□□□ -2.05
RNF4P78317 TRAJ26-201ENST00000390511 60 ntAPPRIS P1 BASIC2.22□□□□□ -2.05
RNF4P78317 SNORA26.6-201ENST00000391256 115 ntBASIC2.22□□□□□ -2.05
RNF4P78317 RPL39P25-201ENST00000449384 154 ntBASIC2.22□□□□□ -2.05
RNF4P78317 AC026436.1-201ENST00000510537 270 ntBASIC2.22□□□□□ -2.05
RNF4P78317 RNA5SP24-201ENST00000516478 95 ntBASIC2.22□□□□□ -2.05
RNF4P78317 IGHVII-40-1-201ENST00000517316 58 ntBASIC2.22□□□□□ -2.05
RNF4P78317 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC2.22□□□□□ -2.05
RNF4P78317 RNA5SP289-201ENST00000362332 137 ntBASIC2.21□□□□□ -2.06
RNF4P78317 Y_RNA.470-201ENST00000384307 117 ntBASIC2.21□□□□□ -2.06
RNF4P78317 RNU7-73P-201ENST00000458743 63 ntBASIC2.21□□□□□ -2.06
RNF4P78317 AC141557.1-201ENST00000540982 400 ntBASIC2.21□□□□□ -2.06
RNF4P78317 MIR4435-1-201ENST00000582552 80 ntBASIC2.21□□□□□ -2.06
RNF4P78317 AC046143.2-201ENST00000609789 160 ntBASIC2.21□□□□□ -2.06
RNF4P78317 AC087741.2-201ENST00000619415 172 ntBASIC2.21□□□□□ -2.06
RNF4P78317 MIR6717-201ENST00000622747 73 ntBASIC2.21□□□□□ -2.06
RNF4P78317 AL162726.3-218ENST00000636401 95 ntBASIC2.21□□□□□ -2.06
RNF4P78317 MIR6841-201ENST00000637129 72 ntBASIC2.21□□□□□ -2.06
RNF4P78317 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC2.21□□□□□ -2.06
RNF4P78317 FAR1-204ENST00000532502 5820 ntTSL 2 BASIC2.2□□□□□ -2.06
RNF4P78317 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC2.2□□□□□ -2.06
RNF4P78317 SNORD114-30-201ENST00000364448 72 ntBASIC2.2□□□□□ -2.06
RNF4P78317 RNU6-816P-201ENST00000390914 107 ntBASIC2.2□□□□□ -2.06
RNF4P78317 RNU6-1268P-201ENST00000391214 107 ntBASIC2.2□□□□□ -2.06
RNF4P78317 RNU6-1239P-201ENST00000391310 107 ntBASIC2.2□□□□□ -2.06
RNF4P78317 AC004965.1-201ENST00000413033 213 ntBASIC2.2□□□□□ -2.06
RNF4P78317 RPS27P21-201ENST00000486977 252 ntBASIC2.2□□□□□ -2.06
RNF4P78317 AC113410.1-201ENST00000505029 247 ntBASIC2.2□□□□□ -2.06
RNF4P78317 DNAJC19P9-201ENST00000555084 351 ntBASIC2.2□□□□□ -2.06
RNF4P78317 MIR3152-201ENST00000579801 74 ntBASIC2.2□□□□□ -2.06
RNF4P78317 AC067747.1-201ENST00000608026 250 ntBASIC2.2□□□□□ -2.06
RNF4P78317 AC008133.2-201ENST00000624540 351 ntBASIC2.2□□□□□ -2.06
RNF4P78317 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC2.2□□□□□ -2.06
RNF4P78317 MIR1255B1-201ENST00000636325 63 ntBASIC2.2□□□□□ -2.06
RNF4P78317 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC2.19□□□□□ -2.06
RNF4P78317 Y_RNA.537-201ENST00000384626 109 ntBASIC2.19□□□□□ -2.06
RNF4P78317 MIR194-1-201ENST00000384892 85 ntBASIC2.19□□□□□ -2.06
RNF4P78317 RNA5SP508-201ENST00000411327 119 ntBASIC2.19□□□□□ -2.06
RNF4P78317 MIR4764-201ENST00000580680 88 ntBASIC2.19□□□□□ -2.06
RNF4P78317 MIR548AE2-201ENST00000583456 67 ntBASIC2.19□□□□□ -2.06
RNF4P78317 Y_RNA.773-201ENST00000607168 90 ntBASIC2.19□□□□□ -2.06
RNF4P78317 RNA5SP259-201ENST00000365541 109 ntBASIC2.18□□□□□ -2.06
RNF4P78317 RNU6-1067P-201ENST00000384752 107 ntBASIC2.18□□□□□ -2.06
RNF4P78317 MIR590-201ENST00000385008 97 ntBASIC2.18□□□□□ -2.06
RNF4P78317 RNY4P30-201ENST00000410216 95 ntBASIC2.18□□□□□ -2.06
RNF4P78317 RNA5SP261-201ENST00000410536 106 ntBASIC2.18□□□□□ -2.06
RNF4P78317 RNU6-109P-201ENST00000516364 107 ntBASIC2.18□□□□□ -2.06
RNF4P78317 RNU6-184P-201ENST00000516514 107 ntBASIC2.18□□□□□ -2.06
RNF4P78317 RNU6ATAC12P-201ENST00000516542 115 ntBASIC2.18□□□□□ -2.06
RNF4P78317 RNA5SP33-201ENST00000516687 98 ntBASIC2.18□□□□□ -2.06
RNF4P78317 MIR3618-201ENST00000580330 88 ntBASIC2.18□□□□□ -2.06
RNF4P78317 XPO4-202ENST00000400602 9884 ntAPPRIS ALT1 TSL 5 BASIC2.18□□□□□ -2.06
RNF4P78317 SENP7-206ENST00000394094 4703 ntAPPRIS ALT2 TSL 1 (best) BASIC2.17□□□□□ -2.06
RNF4P78317 ZNF658B-202ENST00000615961 3375 ntBASIC2.17□□□□□ -2.06
RNF4P78317 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC2.17□□□□□ -2.06
RNF4P78317 MIR21-201ENST00000362134 72 ntBASIC2.17□□□□□ -2.06
RNF4P78317 Y_RNA.348-201ENST00000365403 103 ntBASIC2.17□□□□□ -2.06
RNF4P78317 SNORA32-201ENST00000384072 121 ntBASIC2.17□□□□□ -2.06
RNF4P78317 MIR520C-201ENST00000385005 87 ntBASIC2.17□□□□□ -2.06
RNF4P78317 MIR513A1-201ENST00000385138 129 ntBASIC2.17□□□□□ -2.06
RNF4P78317 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC2.17□□□□□ -2.06
RNF4P78317 RNU4-69P-201ENST00000410677 143 ntBASIC2.17□□□□□ -2.06
RNF4P78317 RNU4-53P-201ENST00000410828 140 ntBASIC2.17□□□□□ -2.06
RNF4P78317 RNU6-893P-201ENST00000458841 100 ntBASIC2.17□□□□□ -2.06
RNF4P78317 AC008413.1-201ENST00000511864 177 ntBASIC2.17□□□□□ -2.06
RNF4P78317 RNU7-43P-201ENST00000516554 64 ntBASIC2.17□□□□□ -2.06
RNF4P78317 AL590808.1-201ENST00000618696 141 ntBASIC2.17□□□□□ -2.06
RNF4P78317 ARHGAP5-202ENST00000345122 9604 ntAPPRIS P3 TSL 5 BASIC2.16□□□□□ -2.06
RNF4P78317 RICTOR-202ENST00000357387 9543 ntAPPRIS P1 TSL 1 (best) BASIC2.16□□□□□ -2.06
RNF4P78317 ZDBF2-202ENST00000611847 9890 ntTSL 5 BASIC2.16□□□□□ -2.06
RNF4P78317 RNU6-661P-201ENST00000362409 107 ntBASIC2.16□□□□□ -2.06
RNF4P78317 RNU6-640P-201ENST00000363693 105 ntBASIC2.16□□□□□ -2.06
RNF4P78317 SNORA1.1-201ENST00000364671 133 ntBASIC2.16□□□□□ -2.06
RNF4P78317 RNU6-1113P-201ENST00000384348 107 ntBASIC2.16□□□□□ -2.06
RNF4P78317 RNU6-905P-201ENST00000384434 107 ntBASIC2.16□□□□□ -2.06
RNF4P78317 AL023284.1-201ENST00000403956 276 ntBASIC2.16□□□□□ -2.06
RNF4P78317 snoU13.16-201ENST00000459350 104 ntBASIC2.16□□□□□ -2.06
RNF4P78317 AC079804.2-201ENST00000490376 200 ntBASIC2.16□□□□□ -2.06
RNF4P78317 Y_RNA.694-201ENST00000516677 117 ntBASIC2.16□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 272.3 ms