Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 MIR376A2-201ENST00000636782 80 ntBASIC1.38□□□□□ -2.19
HDAC4P56524 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC1.38□□□□□ -2.19
HDAC4P56524 Y_RNA.240-201ENST00000364469 95 ntBASIC1.37□□□□□ -2.19
HDAC4P56524 RNU6-643P-201ENST00000384018 107 ntBASIC1.37□□□□□ -2.19
HDAC4P56524 RNU6-342P-201ENST00000384521 104 ntBASIC1.37□□□□□ -2.19
HDAC4P56524 U8.17-201ENST00000391292 132 ntBASIC1.37□□□□□ -2.19
HDAC4P56524 PCNPP3-201ENST00000393579 471 ntBASIC1.37□□□□□ -2.19
HDAC4P56524 AF228730.3-201ENST00000436691 102 ntBASIC1.37□□□□□ -2.19
HDAC4P56524 RPL39P39-201ENST00000455840 151 ntBASIC1.37□□□□□ -2.19
HDAC4P56524 RNU6-504P-201ENST00000516568 104 ntBASIC1.37□□□□□ -2.19
HDAC4P56524 AC019288.1-201ENST00000557918 224 ntBASIC1.37□□□□□ -2.19
HDAC4P56524 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC1.36□□□□□ -2.19
HDAC4P56524 SEPT7P4-201ENST00000437076 306 ntBASIC1.36□□□□□ -2.19
HDAC4P56524 RNU7-41P-201ENST00000515917 61 ntBASIC1.36□□□□□ -2.19
HDAC4P56524 AC107958.3-201ENST00000553410 431 ntTSL 3 BASIC1.36□□□□□ -2.19
HDAC4P56524 MIR4431-201ENST00000579990 94 ntBASIC1.36□□□□□ -2.19
HDAC4P56524 MIR3660-201ENST00000584845 100 ntBASIC1.36□□□□□ -2.19
HDAC4P56524 Y_RNA.37-201ENST00000362606 108 ntBASIC1.35□□□□□ -2.19
HDAC4P56524 SNORD115-28-201ENST00000363931 81 ntBASIC1.35□□□□□ -2.19
HDAC4P56524 RNU6-312P-201ENST00000364629 107 ntBASIC1.35□□□□□ -2.19
HDAC4P56524 SNORA25.8-201ENST00000364831 128 ntBASIC1.35□□□□□ -2.19
HDAC4P56524 SNORA26-201ENST00000391286 122 ntBASIC1.35□□□□□ -2.19
HDAC4P56524 RNU2-13P-201ENST00000515909 113 ntBASIC1.35□□□□□ -2.19
HDAC4P56524 MIR378D2-201ENST00000580636 98 ntBASIC1.35□□□□□ -2.19
HDAC4P56524 MIR4764-201ENST00000580680 88 ntBASIC1.35□□□□□ -2.19
HDAC4P56524 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC1.35□□□□□ -2.19
HDAC4P56524 FTX_2.1-201ENST00000618816 94 ntBASIC1.35□□□□□ -2.19
HDAC4P56524 MIR570-201ENST00000384917 97 ntBASIC1.34□□□□□ -2.19
HDAC4P56524 SNORD77.3-201ENST00000391113 65 ntBASIC1.34□□□□□ -2.19
HDAC4P56524 SNORA40.6-201ENST00000391153 128 ntBASIC1.34□□□□□ -2.19
HDAC4P56524 SNORD36C-201ENST00000516733 66 ntBASIC1.34□□□□□ -2.19
HDAC4P56524 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC1.34□□□□□ -2.19
HDAC4P56524 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC1.34□□□□□ -2.19
HDAC4P56524 Y_RNA.441-201ENST00000384123 112 ntBASIC1.33□□□□□ -2.2
HDAC4P56524 RNU6-947P-201ENST00000516264 106 ntBASIC1.33□□□□□ -2.2
HDAC4P56524 RNU7-43P-201ENST00000516554 64 ntBASIC1.33□□□□□ -2.2
HDAC4P56524 AL365205.2-201ENST00000594586 68 ntBASIC1.33□□□□□ -2.2
HDAC4P56524 RNA5SP327-201ENST00000362494 101 ntBASIC1.32□□□□□ -2.2
HDAC4P56524 Y_RNA.150-201ENST00000363562 102 ntBASIC1.32□□□□□ -2.2
HDAC4P56524 RNU4-84P-201ENST00000364200 139 ntBASIC1.32□□□□□ -2.2
HDAC4P56524 RNU6-1336P-201ENST00000383886 109 ntBASIC1.32□□□□□ -2.2
HDAC4P56524 MIR598-201ENST00000384868 97 ntBASIC1.32□□□□□ -2.2
HDAC4P56524 MIR520C-201ENST00000385005 87 ntBASIC1.32□□□□□ -2.2
HDAC4P56524 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC1.32□□□□□ -2.2
HDAC4P56524 AC006461.1-201ENST00000412637 326 ntBASIC1.32□□□□□ -2.2
HDAC4P56524 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC1.32□□□□□ -2.2
HDAC4P56524 RNU6-182P-201ENST00000516970 105 ntBASIC1.32□□□□□ -2.2
HDAC4P56524 MIR3129-201ENST00000581095 76 ntBASIC1.32□□□□□ -2.2
HDAC4P56524 Y_RNA.354-201ENST00000365448 111 ntBASIC1.31□□□□□ -2.2
HDAC4P56524 RNU6-768P-201ENST00000384683 107 ntBASIC1.31□□□□□ -2.2
HDAC4P56524 SNORA79-201ENST00000408376 140 ntBASIC1.31□□□□□ -2.2
HDAC4P56524 RNU6-1135P-201ENST00000411083 103 ntBASIC1.31□□□□□ -2.2
HDAC4P56524 AC087499.4-201ENST00000448505 178 ntBASIC1.31□□□□□ -2.2
HDAC4P56524 RPS26P48-201ENST00000491713 339 ntBASIC1.31□□□□□ -2.2
HDAC4P56524 SNORA18.4-201ENST00000516440 124 ntBASIC1.31□□□□□ -2.2
HDAC4P56524 RNU7-121P-201ENST00000516604 62 ntBASIC1.31□□□□□ -2.2
HDAC4P56524 RNU6-1223P-201ENST00000517124 104 ntBASIC1.31□□□□□ -2.2
HDAC4P56524 AP003716.2-201ENST00000528260 108 ntBASIC1.31□□□□□ -2.2
HDAC4P56524 PVT1_3.1-201ENST00000620853 95 ntBASIC1.31□□□□□ -2.2
HDAC4P56524 RNU6-53P-201ENST00000365367 106 ntBASIC1.3□□□□□ -2.2
HDAC4P56524 Y_RNA.363-201ENST00000365529 113 ntBASIC1.3□□□□□ -2.2
HDAC4P56524 RNU6-886P-201ENST00000384319 105 ntBASIC1.3□□□□□ -2.2
HDAC4P56524 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC1.3□□□□□ -2.2
HDAC4P56524 RNU6-1054P-201ENST00000411293 104 ntBASIC1.3□□□□□ -2.2
HDAC4P56524 AC048334.1-201ENST00000477975 159 ntBASIC1.3□□□□□ -2.2
HDAC4P56524 Y_RNA.662-201ENST00000516028 97 ntBASIC1.3□□□□□ -2.2
HDAC4P56524 RNU7-40P-201ENST00000516397 64 ntBASIC1.3□□□□□ -2.2
HDAC4P56524 SNORD116-25-201ENST00000516517 92 ntBASIC1.3□□□□□ -2.2
HDAC4P56524 AP003484.1-201ENST00000530974 250 ntBASIC1.3□□□□□ -2.2
HDAC4P56524 AC134878.1-201ENST00000619901 243 ntBASIC1.3□□□□□ -2.2
HDAC4P56524 AC008133.2-201ENST00000624540 351 ntBASIC1.3□□□□□ -2.2
HDAC4P56524 UGP2-230ENST00000626380 276 ntTSL 5 BASIC1.3□□□□□ -2.2
HDAC4P56524 RNY1P11-201ENST00000363759 113 ntBASIC1.29□□□□□ -2.2
HDAC4P56524 RNA5SP48-201ENST00000363969 126 ntBASIC1.29□□□□□ -2.2
HDAC4P56524 Y_RNA.370-201ENST00000365589 108 ntBASIC1.29□□□□□ -2.2
HDAC4P56524 SNORA24-201ENST00000384096 131 ntBASIC1.29□□□□□ -2.2
HDAC4P56524 MIR1302-7-201ENST00000408841 72 ntBASIC1.29□□□□□ -2.2
HDAC4P56524 SNORA31.4-201ENST00000516049 129 ntBASIC1.29□□□□□ -2.2
HDAC4P56524 RN7SKP179-201ENST00000516126 217 ntBASIC1.29□□□□□ -2.2
HDAC4P56524 AC090821.2-201ENST00000523552 176 ntBASIC1.29□□□□□ -2.2
HDAC4P56524 MIR4791-201ENST00000607666 84 ntBASIC1.29□□□□□ -2.2
HDAC4P56524 MIR3658-201ENST00000636291 56 ntBASIC1.29□□□□□ -2.2
HDAC4P56524 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC1.29□□□□□ -2.2
HDAC4P56524 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.29□□□□□ -2.2
HDAC4P56524 SNORD115-34-201ENST00000362441 82 ntBASIC1.28□□□□□ -2.2
HDAC4P56524 SNORD115-12-201ENST00000362583 82 ntBASIC1.28□□□□□ -2.2
HDAC4P56524 SNORD115-29-201ENST00000362834 82 ntBASIC1.28□□□□□ -2.2
HDAC4P56524 SNORD115-9-201ENST00000362912 82 ntBASIC1.28□□□□□ -2.2
HDAC4P56524 SNORD115-21-201ENST00000362963 81 ntBASIC1.28□□□□□ -2.2
HDAC4P56524 SNORD115-14-201ENST00000363090 81 ntBASIC1.28□□□□□ -2.2
HDAC4P56524 SNORD115-13-201ENST00000363358 82 ntBASIC1.28□□□□□ -2.2
HDAC4P56524 SNORD115-41-201ENST00000363608 82 ntBASIC1.28□□□□□ -2.2
HDAC4P56524 SNORD115-11-201ENST00000363616 82 ntBASIC1.28□□□□□ -2.2
HDAC4P56524 SNORD115-5-201ENST00000363633 82 ntBASIC1.28□□□□□ -2.2
HDAC4P56524 SNORD115-39-201ENST00000363694 82 ntBASIC1.28□□□□□ -2.2
HDAC4P56524 SNORD115-4-201ENST00000363810 82 ntBASIC1.28□□□□□ -2.2
HDAC4P56524 SNORD115-16-201ENST00000363887 82 ntBASIC1.28□□□□□ -2.2
HDAC4P56524 SNORD115-6-201ENST00000363942 82 ntBASIC1.28□□□□□ -2.2
HDAC4P56524 SNORD115-42-201ENST00000364273 82 ntBASIC1.28□□□□□ -2.2
HDAC4P56524 Y_RNA.241-201ENST00000364470 117 ntBASIC1.28□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 175 ms