Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 SNORD58C-201ENST00000365223 64 ntBASIC1.16□□□□□ -2.22
COL4A4P53420 Y_RNA.348-201ENST00000365403 103 ntBASIC1.16□□□□□ -2.22
COL4A4P53420 MIR561-201ENST00000385216 97 ntBASIC1.16□□□□□ -2.22
COL4A4P53420 RNU2-48P-201ENST00000410694 191 ntBASIC1.16□□□□□ -2.22
COL4A4P53420 RNA5SP136-201ENST00000410906 107 ntBASIC1.16□□□□□ -2.22
COL4A4P53420 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC1.16□□□□□ -2.22
COL4A4P53420 AL049830.1-201ENST00000468034 425 ntBASIC1.16□□□□□ -2.22
COL4A4P53420 RPS26P48-201ENST00000491713 339 ntBASIC1.16□□□□□ -2.22
COL4A4P53420 OR9P1P-201ENST00000496431 281 ntBASIC1.16□□□□□ -2.22
COL4A4P53420 RNU6-586P-201ENST00000517265 104 ntBASIC1.16□□□□□ -2.22
COL4A4P53420 AP001318.4-201ENST00000616637 121 ntBASIC1.16□□□□□ -2.22
COL4A4P53420 MIR1248-201ENST00000629190 106 ntBASIC1.16□□□□□ -2.22
COL4A4P53420 MIR330-201ENST00000362196 94 ntBASIC1.16□□□□□ -2.22
COL4A4P53420 RNU6-1084P-201ENST00000362498 107 ntBASIC1.16□□□□□ -2.22
COL4A4P53420 Y_RNA.49-201ENST00000362714 112 ntBASIC1.16□□□□□ -2.22
COL4A4P53420 RNU4-38P-201ENST00000364472 129 ntBASIC1.16□□□□□ -2.22
COL4A4P53420 Y_RNA.281-201ENST00000364774 94 ntBASIC1.16□□□□□ -2.22
COL4A4P53420 RNU6-905P-201ENST00000384434 107 ntBASIC1.16□□□□□ -2.22
COL4A4P53420 AC099677.2-201ENST00000436385 175 ntBASIC1.16□□□□□ -2.22
COL4A4P53420 AF228730.3-201ENST00000436691 102 ntBASIC1.16□□□□□ -2.22
COL4A4P53420 RPS26P45-201ENST00000471748 340 ntBASIC1.16□□□□□ -2.22
COL4A4P53420 RNU7-172P-201ENST00000517125 64 ntBASIC1.16□□□□□ -2.22
COL4A4P53420 MIR4662B-201ENST00000579498 81 ntBASIC1.16□□□□□ -2.22
COL4A4P53420 AC006254.2-201ENST00000603259 279 ntBASIC1.16□□□□□ -2.22
COL4A4P53420 AL022345.2-201ENST00000606307 135 ntBASIC1.16□□□□□ -2.22
COL4A4P53420 AL137067.1-201ENST00000615933 120 ntBASIC1.16□□□□□ -2.22
COL4A4P53420 U6.95-201ENST00000636931 70 ntBASIC1.16□□□□□ -2.22
COL4A4P53420 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC1.16□□□□□ -2.22
COL4A4P53420 SNORA63.5-201ENST00000363548 123 ntBASIC1.15□□□□□ -2.23
COL4A4P53420 RNU11-5P-201ENST00000391216 129 ntBASIC1.15□□□□□ -2.23
COL4A4P53420 MIR891A-201ENST00000401237 79 ntBASIC1.15□□□□□ -2.23
COL4A4P53420 RNU6-1186P-201ENST00000410429 97 ntBASIC1.15□□□□□ -2.23
COL4A4P53420 AC093423.2-201ENST00000429074 437 ntTSL 3 BASIC1.15□□□□□ -2.23
COL4A4P53420 RNA5SP233-201ENST00000459153 113 ntBASIC1.15□□□□□ -2.23
COL4A4P53420 RNU7-94P-201ENST00000459576 63 ntBASIC1.15□□□□□ -2.23
COL4A4P53420 RNU6-781P-201ENST00000516377 101 ntBASIC1.15□□□□□ -2.23
COL4A4P53420 RNU2-34P-201ENST00000516534 121 ntBASIC1.15□□□□□ -2.23
COL4A4P53420 Y_RNA.694-201ENST00000516677 117 ntBASIC1.15□□□□□ -2.23
COL4A4P53420 Y_RNA.714-201ENST00000517065 90 ntBASIC1.15□□□□□ -2.23
COL4A4P53420 CYP3A137P-201ENST00000562436 69 ntBASIC1.15□□□□□ -2.23
COL4A4P53420 MIR3129-201ENST00000581095 76 ntBASIC1.15□□□□□ -2.23
COL4A4P53420 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC1.15□□□□□ -2.23
COL4A4P53420 AC134878.1-201ENST00000619901 243 ntBASIC1.15□□□□□ -2.23
COL4A4P53420 AC106754.2-201ENST00000623006 233 ntBASIC1.15□□□□□ -2.23
COL4A4P53420 AC018630.2-201ENST00000534866 2403 ntBASIC1.15□□□□□ -2.23
COL4A4P53420 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC1.15□□□□□ -2.23
COL4A4P53420 AC245060.5-201ENST00000610778 3293 ntBASIC1.14□□□□□ -2.23
COL4A4P53420 RNU6-349P-201ENST00000362402 107 ntBASIC1.14□□□□□ -2.23
COL4A4P53420 Y_RNA.52-201ENST00000362760 96 ntBASIC1.14□□□□□ -2.23
COL4A4P53420 Y_RNA.242-201ENST00000364473 110 ntBASIC1.14□□□□□ -2.23
COL4A4P53420 SNORD61-201ENST00000384252 73 ntBASIC1.14□□□□□ -2.23
COL4A4P53420 MIR562-201ENST00000384894 95 ntBASIC1.14□□□□□ -2.23
COL4A4P53420 MIR548A2-201ENST00000384956 97 ntBASIC1.14□□□□□ -2.23
COL4A4P53420 SNORA12.1-201ENST00000390873 148 ntBASIC1.14□□□□□ -2.23
COL4A4P53420 AL117342.1-201ENST00000404861 406 ntBASIC1.14□□□□□ -2.23
COL4A4P53420 MIR1253-201ENST00000408273 105 ntBASIC1.14□□□□□ -2.23
COL4A4P53420 MIR1263-201ENST00000408324 86 ntBASIC1.14□□□□□ -2.23
COL4A4P53420 AC123900.1-201ENST00000420390 96 ntBASIC1.14□□□□□ -2.23
COL4A4P53420 RPS29P24-201ENST00000486345 171 ntBASIC1.14□□□□□ -2.23
COL4A4P53420 SNORD33.1-201ENST00000516213 88 ntBASIC1.14□□□□□ -2.23
COL4A4P53420 RNU7-99P-201ENST00000516271 62 ntBASIC1.14□□□□□ -2.23
COL4A4P53420 SCARNA11.3-201ENST00000517276 130 ntBASIC1.14□□□□□ -2.23
COL4A4P53420 AC007012.1-201ENST00000567192 175 ntBASIC1.14□□□□□ -2.23
COL4A4P53420 AC245884.12-201ENST00000615364 59 ntBASIC1.14□□□□□ -2.23
COL4A4P53420 AC090517.3-201ENST00000625170 141 ntBASIC1.14□□□□□ -2.23
COL4A4P53420 MIR7515-201ENST00000637837 67 ntBASIC1.14□□□□□ -2.23
COL4A4P53420 Y_RNA.203-201ENST00000364106 102 ntBASIC1.13□□□□□ -2.23
COL4A4P53420 Y_RNA.410-201ENST00000383992 113 ntBASIC1.13□□□□□ -2.23
COL4A4P53420 MIR520G-201ENST00000385064 90 ntBASIC1.13□□□□□ -2.23
COL4A4P53420 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC1.13□□□□□ -2.23
COL4A4P53420 MIR1302-4-201ENST00000408701 150 ntBASIC1.13□□□□□ -2.23
COL4A4P53420 AC008134.1-201ENST00000420943 193 ntBASIC1.13□□□□□ -2.23
COL4A4P53420 AL591704.2-201ENST00000421658 181 ntBASIC1.13□□□□□ -2.23
COL4A4P53420 AL163195.1-201ENST00000496941 348 ntBASIC1.13□□□□□ -2.23
COL4A4P53420 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC1.13□□□□□ -2.23
COL4A4P53420 LINC02064-201ENST00000506492 470 ntTSL 5 BASIC1.13□□□□□ -2.23
COL4A4P53420 RNU1-142P-201ENST00000516682 145 ntBASIC1.13□□□□□ -2.23
COL4A4P53420 RNU6-341P-201ENST00000516973 96 ntBASIC1.13□□□□□ -2.23
COL4A4P53420 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC1.13□□□□□ -2.23
COL4A4P53420 MIR7157-201ENST00000635801 60 ntBASIC1.13□□□□□ -2.23
COL4A4P53420 MIR338-201ENST00000636369 67 ntBASIC1.13□□□□□ -2.23
COL4A4P53420 AC010487.4-201ENST00000637027 61 ntBASIC1.13□□□□□ -2.23
COL4A4P53420 GS1-279B7.1-204ENST00000641809 378 ntBASIC1.13□□□□□ -2.23
COL4A4P53420 AL442644.1-201ENST00000454390 3105 ntBASIC1.13□□□□□ -2.23
COL4A4P53420 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC1.13□□□□□ -2.23
COL4A4P53420 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC1.13□□□□□ -2.23
COL4A4P53420 MIR450A1-201ENST00000362262 91 ntBASIC1.13□□□□□ -2.23
COL4A4P53420 RNY4P6-201ENST00000363667 96 ntBASIC1.13□□□□□ -2.23
COL4A4P53420 Y_RNA.253-201ENST00000364562 112 ntBASIC1.13□□□□□ -2.23
COL4A4P53420 RNU6-294P-201ENST00000364999 102 ntBASIC1.13□□□□□ -2.23
COL4A4P53420 RNU6-1292P-201ENST00000383856 107 ntBASIC1.13□□□□□ -2.23
COL4A4P53420 Y_RNA.495-201ENST00000384435 112 ntBASIC1.13□□□□□ -2.23
COL4A4P53420 AC016909.1-201ENST00000415916 166 ntBASIC1.13□□□□□ -2.23
COL4A4P53420 SNRPGP10-201ENST00000432323 225 ntBASIC1.13□□□□□ -2.23
COL4A4P53420 AL031737.1-201ENST00000450125 223 ntBASIC1.13□□□□□ -2.23
COL4A4P53420 COX6CP6-201ENST00000490840 228 ntBASIC1.13□□□□□ -2.23
COL4A4P53420 AC011406.1-201ENST00000512440 370 ntBASIC1.13□□□□□ -2.23
COL4A4P53420 Y_RNA.666-201ENST00000516187 112 ntBASIC1.13□□□□□ -2.23
COL4A4P53420 SCARNA15-202ENST00000516881 127 ntBASIC1.13□□□□□ -2.23
COL4A4P53420 AC007751.1-201ENST00000529260 376 ntBASIC1.13□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 104.5 ms