Protein–RNA interactions for Protein: P48059

LIMS1, LIM and senescent cell antigen-like-containing domain protein 1, humanhuman

Predictions only

Length 325 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1P48059 SNORA4.2-201ENST00000365313 147 ntBASIC2.24□□□□□ -2.05
LIMS1P48059 MIR27B-201ENST00000385129 97 ntBASIC2.24□□□□□ -2.05
LIMS1P48059 RNU4-69P-201ENST00000410677 143 ntBASIC2.24□□□□□ -2.05
LIMS1P48059 RNU6-237P-201ENST00000515985 71 ntBASIC2.24□□□□□ -2.05
LIMS1P48059 AC121758.2-201ENST00000553271 193 ntBASIC2.24□□□□□ -2.05
LIMS1P48059 AC103810.6-201ENST00000606708 136 ntBASIC2.24□□□□□ -2.05
LIMS1P48059 MIR203B-201ENST00000636080 86 ntBASIC2.24□□□□□ -2.05
LIMS1P48059 CCSAP-202ENST00000366686 4399 ntTSL 2 BASIC2.24□□□□□ -2.05
LIMS1P48059 CFH-202ENST00000367429 4127 ntAPPRIS P1 TSL 1 (best) BASIC2.24□□□□□ -2.05
LIMS1P48059 CCPG1-203ENST00000442196 3453 ntAPPRIS P1 TSL 2 BASIC2.23□□□□□ -2.05
LIMS1P48059 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC2.23□□□□□ -2.05
LIMS1P48059 Y_RNA.290-201ENST00000364879 114 ntBASIC2.23□□□□□ -2.05
LIMS1P48059 RNU6-1031P-201ENST00000384773 107 ntBASIC2.23□□□□□ -2.05
LIMS1P48059 MIR452-201ENST00000385020 85 ntBASIC2.23□□□□□ -2.05
LIMS1P48059 SNORA26.6-201ENST00000391256 115 ntBASIC2.23□□□□□ -2.05
LIMS1P48059 RNU6-733P-201ENST00000410759 104 ntBASIC2.23□□□□□ -2.05
LIMS1P48059 RN7SKP192-201ENST00000411291 327 ntBASIC2.23□□□□□ -2.05
LIMS1P48059 PGBD4P5-201ENST00000445958 426 ntBASIC2.23□□□□□ -2.05
LIMS1P48059 RNU6ATAC9P-201ENST00000516210 116 ntBASIC2.23□□□□□ -2.05
LIMS1P48059 RNA5SP24-201ENST00000516478 95 ntBASIC2.23□□□□□ -2.05
LIMS1P48059 FAM71BP1-201ENST00000604431 523 ntBASIC2.23□□□□□ -2.05
LIMS1P48059 AC064859.1-201ENST00000624741 174 ntBASIC2.23□□□□□ -2.05
LIMS1P48059 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC2.22□□□□□ -2.05
LIMS1P48059 OSTN-201ENST00000339051 402 ntAPPRIS P1 TSL 1 (best) BASIC2.22□□□□□ -2.05
LIMS1P48059 Y_RNA.171-201ENST00000363760 102 ntBASIC2.22□□□□□ -2.05
LIMS1P48059 SNORA1.2-201ENST00000365189 134 ntBASIC2.22□□□□□ -2.05
LIMS1P48059 RNU6-409P-201ENST00000384114 104 ntBASIC2.22□□□□□ -2.05
LIMS1P48059 MIR597-201ENST00000384968 97 ntBASIC2.22□□□□□ -2.05
LIMS1P48059 RNU6-592P-201ENST00000411333 103 ntBASIC2.22□□□□□ -2.05
LIMS1P48059 AC004941.2-201ENST00000427009 228 ntBASIC2.22□□□□□ -2.05
LIMS1P48059 RNU7-26P-201ENST00000458980 63 ntBASIC2.22□□□□□ -2.05
LIMS1P48059 MIR1270-201ENST00000459320 83 ntBASIC2.22□□□□□ -2.05
LIMS1P48059 RNU7-45P-201ENST00000459460 63 ntBASIC2.22□□□□□ -2.05
LIMS1P48059 RNA5SP320-201ENST00000516263 124 ntBASIC2.22□□□□□ -2.05
LIMS1P48059 SCARNA16.3-201ENST00000516595 184 ntBASIC2.22□□□□□ -2.05
LIMS1P48059 AL513534.2-201ENST00000603836 250 ntBASIC2.22□□□□□ -2.05
LIMS1P48059 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC2.22□□□□□ -2.05
LIMS1P48059 MIR6817-201ENST00000615588 66 ntBASIC2.22□□□□□ -2.05
LIMS1P48059 MIR1245B-201ENST00000636115 69 ntBASIC2.22□□□□□ -2.05
LIMS1P48059 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC2.22□□□□□ -2.05
LIMS1P48059 ICE2P2-201ENST00000483823 2787 ntBASIC2.22□□□□□ -2.05
LIMS1P48059 ZNF658B-202ENST00000615961 3375 ntBASIC2.22□□□□□ -2.05
LIMS1P48059 FGF7-201ENST00000267843 5467 ntAPPRIS P1 TSL 1 (best) BASIC2.21□□□□□ -2.05
LIMS1P48059 SAGE1-201ENST00000324447 2952 ntAPPRIS P2 TSL 5 BASIC2.21□□□□□ -2.06
LIMS1P48059 RGPD1-204ENST00000559485 5247 ntAPPRIS P2 TSL 1 (best) BASIC2.21□□□□□ -2.06
LIMS1P48059 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC2.21□□□□□ -2.06
LIMS1P48059 Y_RNA.155-201ENST00000363632 101 ntBASIC2.21□□□□□ -2.06
LIMS1P48059 RNA5SP68-201ENST00000363885 119 ntBASIC2.21□□□□□ -2.06
LIMS1P48059 Y_RNA.377-201ENST00000365644 108 ntBASIC2.21□□□□□ -2.06
LIMS1P48059 SNORA70.7-201ENST00000384159 133 ntBASIC2.21□□□□□ -2.06
LIMS1P48059 RNU1-52P-201ENST00000384190 164 ntBASIC2.21□□□□□ -2.06
LIMS1P48059 RNU6-679P-201ENST00000391003 106 ntBASIC2.21□□□□□ -2.06
LIMS1P48059 Y_RNA.593-201ENST00000410292 98 ntBASIC2.21□□□□□ -2.06
LIMS1P48059 RNU7-113P-201ENST00000459273 62 ntBASIC2.21□□□□□ -2.06
LIMS1P48059 snoMBII-202.2-201ENST00000517263 86 ntBASIC2.21□□□□□ -2.06
LIMS1P48059 AC012531.4-201ENST00000616509 177 ntBASIC2.21□□□□□ -2.06
LIMS1P48059 U4.3-201ENST00000621047 82 ntBASIC2.21□□□□□ -2.06
LIMS1P48059 PLD1-217ENST00000627725 174 ntTSL 5 BASIC2.21□□□□□ -2.06
LIMS1P48059 AC245060.5-201ENST00000610778 3293 ntBASIC2.21□□□□□ -2.06
LIMS1P48059 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC2.2□□□□□ -2.06
LIMS1P48059 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC2.2□□□□□ -2.06
LIMS1P48059 SNORA22.1-201ENST00000362701 134 ntBASIC2.2□□□□□ -2.06
LIMS1P48059 RNU6-170P-201ENST00000362832 104 ntBASIC2.2□□□□□ -2.06
LIMS1P48059 RNU1-51P-201ENST00000365345 176 ntBASIC2.2□□□□□ -2.06
LIMS1P48059 Y_RNA.430-201ENST00000384081 110 ntBASIC2.2□□□□□ -2.06
LIMS1P48059 Y_RNA.470-201ENST00000384307 117 ntBASIC2.2□□□□□ -2.06
LIMS1P48059 MIR504-201ENST00000385065 83 ntBASIC2.2□□□□□ -2.06
LIMS1P48059 MIR605-201ENST00000385078 83 ntBASIC2.2□□□□□ -2.06
LIMS1P48059 RNA5SP465-201ENST00000391195 109 ntBASIC2.2□□□□□ -2.06
LIMS1P48059 AC008413.1-201ENST00000511864 177 ntBASIC2.2□□□□□ -2.06
LIMS1P48059 RNU7-61P-201ENST00000515897 61 ntBASIC2.2□□□□□ -2.06
LIMS1P48059 RNU7-12P-201ENST00000516030 62 ntBASIC2.2□□□□□ -2.06
LIMS1P48059 RNU6-638P-201ENST00000516582 104 ntBASIC2.2□□□□□ -2.06
LIMS1P48059 MIR3126-201ENST00000577443 74 ntBASIC2.2□□□□□ -2.06
LIMS1P48059 RNY1P10-201ENST00000363268 113 ntBASIC2.19□□□□□ -2.06
LIMS1P48059 SNORA38-201ENST00000363946 132 ntBASIC2.19□□□□□ -2.06
LIMS1P48059 RNU6-1134P-201ENST00000365156 101 ntBASIC2.19□□□□□ -2.06
LIMS1P48059 Y_RNA.370-201ENST00000365589 108 ntBASIC2.19□□□□□ -2.06
LIMS1P48059 RNU6-573P-201ENST00000383938 106 ntBASIC2.19□□□□□ -2.06
LIMS1P48059 SNORA6-201ENST00000384033 151 ntBASIC2.19□□□□□ -2.06
LIMS1P48059 MIR516B2-201ENST00000385190 85 ntBASIC2.19□□□□□ -2.06
LIMS1P48059 MIR136-201ENST00000385207 82 ntBASIC2.19□□□□□ -2.06
LIMS1P48059 SNORA48.1-201ENST00000390879 135 ntBASIC2.19□□□□□ -2.06
LIMS1P48059 RPS29P29-201ENST00000456396 171 ntBASIC2.19□□□□□ -2.06
LIMS1P48059 RNU7-73P-201ENST00000458743 63 ntBASIC2.19□□□□□ -2.06
LIMS1P48059 RNVU1-2-201ENST00000516326 135 ntBASIC2.19□□□□□ -2.06
LIMS1P48059 Y_RNA.685-201ENST00000516532 108 ntBASIC2.19□□□□□ -2.06
LIMS1P48059 RNU6-1018P-201ENST00000516577 106 ntBASIC2.19□□□□□ -2.06
LIMS1P48059 RNU7-53P-201ENST00000516705 60 ntBASIC2.19□□□□□ -2.06
LIMS1P48059 RNA5SP437-201ENST00000517249 129 ntBASIC2.19□□□□□ -2.06
LIMS1P48059 IGHVIII-5-1-201ENST00000523059 99 ntBASIC2.19□□□□□ -2.06
LIMS1P48059 SUB1P4-201ENST00000566062 339 ntBASIC2.19□□□□□ -2.06
LIMS1P48059 MIR3152-201ENST00000579801 74 ntBASIC2.19□□□□□ -2.06
LIMS1P48059 SNORD53-201ENST00000579969 78 ntBASIC2.19□□□□□ -2.06
LIMS1P48059 MIR548AE2-201ENST00000583456 67 ntBASIC2.19□□□□□ -2.06
LIMS1P48059 XPO4-202ENST00000400602 9884 ntAPPRIS ALT1 TSL 5 BASIC2.19□□□□□ -2.06
LIMS1P48059 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC2.18□□□□□ -2.06
LIMS1P48059 STX7-202ENST00000367941 15791 ntAPPRIS P1 TSL 1 (best) BASIC2.18□□□□□ -2.06
LIMS1P48059 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC2.18□□□□□ -2.06
LIMS1P48059 U8.2-201ENST00000363156 134 ntBASIC2.18□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 183.5 ms