Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 Y_RNA.497-201ENST00000384447 98 ntBASIC1.57□□□□□ -2.16
CIITAP33076 Y_RNA.542-201ENST00000384641 111 ntBASIC1.57□□□□□ -2.16
CIITAP33076 MIR624-201ENST00000385217 97 ntBASIC1.57□□□□□ -2.16
CIITAP33076 RNA5SP272-201ENST00000516095 111 ntBASIC1.57□□□□□ -2.16
CIITAP33076 MIR4421-201ENST00000578133 69 ntBASIC1.57□□□□□ -2.16
CIITAP33076 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC1.57□□□□□ -2.16
CIITAP33076 AL121890.5-201ENST00000620848 304 ntBASIC1.57□□□□□ -2.16
CIITAP33076 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC1.57□□□□□ -2.16
CIITAP33076 SNORA25.7-201ENST00000364375 127 ntBASIC1.56□□□□□ -2.16
CIITAP33076 SNORD36C-201ENST00000516733 66 ntBASIC1.56□□□□□ -2.16
CIITAP33076 RNU2-60P-201ENST00000517290 128 ntBASIC1.56□□□□□ -2.16
CIITAP33076 AC112693.2-201ENST00000556538 232 ntBASIC1.56□□□□□ -2.16
CIITAP33076 FAM106DP-201ENST00000586416 501 ntBASIC1.56□□□□□ -2.16
CIITAP33076 AP001485.1-201ENST00000604799 199 ntBASIC1.56□□□□□ -2.16
CIITAP33076 AC134878.1-201ENST00000619901 243 ntBASIC1.56□□□□□ -2.16
CIITAP33076 SNORD1A-201ENST00000364968 72 ntBASIC1.55□□□□□ -2.16
CIITAP33076 MIR136-201ENST00000385207 82 ntBASIC1.55□□□□□ -2.16
CIITAP33076 SNORD28B-201ENST00000390993 75 ntBASIC1.55□□□□□ -2.16
CIITAP33076 U8.17-201ENST00000391292 132 ntBASIC1.55□□□□□ -2.16
CIITAP33076 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC1.55□□□□□ -2.16
CIITAP33076 RNA5SP61-201ENST00000516453 100 ntBASIC1.55□□□□□ -2.16
CIITAP33076 RNU6-426P-201ENST00000516464 97 ntBASIC1.55□□□□□ -2.16
CIITAP33076 SCARNA15-202ENST00000516881 127 ntBASIC1.55□□□□□ -2.16
CIITAP33076 RNU7-181P-201ENST00000517234 74 ntBASIC1.55□□□□□ -2.16
CIITAP33076 MIR548X2-201ENST00000579776 100 ntBASIC1.55□□□□□ -2.16
CIITAP33076 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC1.55□□□□□ -2.16
CIITAP33076 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.55□□□□□ -2.16
CIITAP33076 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC1.55□□□□□ -2.16
CIITAP33076 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.54□□□□□ -2.16
CIITAP33076 SNORA2.2-201ENST00000365473 135 ntBASIC1.54□□□□□ -2.16
CIITAP33076 RNA5SP259-201ENST00000365541 109 ntBASIC1.54□□□□□ -2.16
CIITAP33076 SNORD41-201ENST00000386967 70 ntBASIC1.54□□□□□ -2.16
CIITAP33076 RNA5SP127-201ENST00000411051 133 ntBASIC1.54□□□□□ -2.16
CIITAP33076 AC027119.1-201ENST00000440877 241 ntBASIC1.54□□□□□ -2.16
CIITAP33076 RNU1-92P-201ENST00000517017 135 ntBASIC1.54□□□□□ -2.16
CIITAP33076 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC1.54□□□□□ -2.16
CIITAP33076 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.54□□□□□ -2.16
CIITAP33076 AC090049.2-201ENST00000550377 109 ntBASIC1.54□□□□□ -2.16
CIITAP33076 MIR3937-201ENST00000580135 106 ntBASIC1.54□□□□□ -2.16
CIITAP33076 MIR548AR-201ENST00000582191 57 ntBASIC1.54□□□□□ -2.16
CIITAP33076 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC1.54□□□□□ -2.16
CIITAP33076 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC1.54□□□□□ -2.16
CIITAP33076 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC1.53□□□□□ -2.16
CIITAP33076 Y_RNA.52-201ENST00000362760 96 ntBASIC1.53□□□□□ -2.16
CIITAP33076 Y_RNA.224-201ENST00000364308 111 ntBASIC1.53□□□□□ -2.16
CIITAP33076 Y_RNA.410-201ENST00000383992 113 ntBASIC1.53□□□□□ -2.16
CIITAP33076 Y_RNA.488-201ENST00000384403 102 ntBASIC1.53□□□□□ -2.16
CIITAP33076 Y_RNA.568-201ENST00000384742 113 ntBASIC1.53□□□□□ -2.16
CIITAP33076 SNORD37.2-201ENST00000391075 66 ntBASIC1.53□□□□□ -2.16
CIITAP33076 RNU6-460P-201ENST00000391158 108 ntBASIC1.53□□□□□ -2.16
CIITAP33076 AC009474.2-201ENST00000451383 136 ntBASIC1.53□□□□□ -2.16
CIITAP33076 SNORD123-201ENST00000459473 70 ntBASIC1.53□□□□□ -2.16
CIITAP33076 RNU2-13P-201ENST00000515909 113 ntBASIC1.53□□□□□ -2.16
CIITAP33076 SNORA25.12-201ENST00000516202 82 ntBASIC1.53□□□□□ -2.16
CIITAP33076 SNORA18.7-201ENST00000516910 131 ntBASIC1.53□□□□□ -2.16
CIITAP33076 AP003484.1-201ENST00000530974 250 ntBASIC1.53□□□□□ -2.16
CIITAP33076 MIR5197-201ENST00000583721 112 ntBASIC1.53□□□□□ -2.16
CIITAP33076 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC1.52□□□□□ -2.17
CIITAP33076 MTND5P32-201ENST00000560711 1802 ntBASIC1.52□□□□□ -2.17
CIITAP33076 SNORA7.1-201ENST00000363750 139 ntBASIC1.52□□□□□ -2.17
CIITAP33076 Y_RNA.440-201ENST00000384120 114 ntBASIC1.52□□□□□ -2.17
CIITAP33076 SNX2P2-201ENST00000424553 323 ntBASIC1.52□□□□□ -2.17
CIITAP33076 AL392103.1-201ENST00000447000 198 ntBASIC1.52□□□□□ -2.17
CIITAP33076 AC087499.4-201ENST00000448505 178 ntBASIC1.52□□□□□ -2.17
CIITAP33076 RPS29P29-201ENST00000456396 171 ntBASIC1.52□□□□□ -2.17
CIITAP33076 RNU1-123P-201ENST00000458950 160 ntBASIC1.52□□□□□ -2.17
CIITAP33076 RPS26P48-201ENST00000491713 339 ntBASIC1.52□□□□□ -2.17
CIITAP33076 SNORA31.4-201ENST00000516049 129 ntBASIC1.52□□□□□ -2.17
CIITAP33076 RNA5SP236-201ENST00000516169 116 ntBASIC1.52□□□□□ -2.17
CIITAP33076 SNORA18.4-201ENST00000516440 124 ntBASIC1.52□□□□□ -2.17
CIITAP33076 SNORA74.3-201ENST00000517108 154 ntBASIC1.52□□□□□ -2.17
CIITAP33076 AC131055.1-201ENST00000584626 316 ntBASIC1.52□□□□□ -2.17
CIITAP33076 MIR3660-201ENST00000584845 100 ntBASIC1.52□□□□□ -2.17
CIITAP33076 AL161722.3-201ENST00000605789 2983 ntBASIC1.51□□□□□ -2.17
CIITAP33076 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.51□□□□□ -2.17
CIITAP33076 RNU6-508P-201ENST00000363231 103 ntBASIC1.51□□□□□ -2.17
CIITAP33076 SNORD50.2-201ENST00000365465 70 ntBASIC1.51□□□□□ -2.17
CIITAP33076 RNU6-1189P-201ENST00000383958 107 ntBASIC1.51□□□□□ -2.17
CIITAP33076 SNORA20-201ENST00000384662 132 ntBASIC1.51□□□□□ -2.17
CIITAP33076 AC004223.1-201ENST00000479840 271 ntBASIC1.51□□□□□ -2.17
CIITAP33076 Y_RNA.686-201ENST00000516548 134 ntBASIC1.51□□□□□ -2.17
CIITAP33076 IGHVIII-67-2-201ENST00000519849 88 ntBASIC1.51□□□□□ -2.17
CIITAP33076 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC1.5□□□□□ -2.17
CIITAP33076 MIR489-201ENST00000384923 84 ntBASIC1.5□□□□□ -2.17
CIITAP33076 MIR758-201ENST00000390227 88 ntBASIC1.5□□□□□ -2.17
CIITAP33076 RNU6-257P-201ENST00000410238 98 ntBASIC1.5□□□□□ -2.17
CIITAP33076 RNU6-955P-201ENST00000410497 104 ntBASIC1.5□□□□□ -2.17
CIITAP33076 RNU6-704P-201ENST00000364162 103 ntBASIC1.49□□□□□ -2.17
CIITAP33076 Y_RNA.420-201ENST00000384043 110 ntBASIC1.49□□□□□ -2.17
CIITAP33076 MIR613-201ENST00000385248 95 ntBASIC1.49□□□□□ -2.17
CIITAP33076 SNORA40.5-201ENST00000391061 128 ntBASIC1.49□□□□□ -2.17
CIITAP33076 SNORA40.6-201ENST00000391153 128 ntBASIC1.49□□□□□ -2.17
CIITAP33076 MIR513C-201ENST00000401352 84 ntBASIC1.49□□□□□ -2.17
CIITAP33076 RPS29P23-201ENST00000458635 123 ntBASIC1.49□□□□□ -2.17
CIITAP33076 snoU13.25-201ENST00000458945 104 ntBASIC1.49□□□□□ -2.17
CIITAP33076 RPL30P7-201ENST00000479312 323 ntBASIC1.49□□□□□ -2.17
CIITAP33076 RNU6-922P-201ENST00000516753 99 ntBASIC1.49□□□□□ -2.17
CIITAP33076 AL513534.2-201ENST00000603836 250 ntBASIC1.49□□□□□ -2.17
CIITAP33076 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC1.49□□□□□ -2.17
CIITAP33076 SNORD115-34-201ENST00000362441 82 ntBASIC1.48□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 176.9 ms