Protein–RNA interactions for Protein: P22670

RFX1, MHC class II regulatory factor RFX1, humanhuman

Predictions only

Length 979 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX1P22670 UHMK1-204ENST00000545294 8117 ntTSL 2 BASIC2.72□□□□□ -1.97
RFX1P22670 AC080100.1-201ENST00000624239 5356 ntBASIC2.72□□□□□ -1.97
RFX1P22670 FGF7-201ENST00000267843 5467 ntAPPRIS P1 TSL 1 (best) BASIC2.72□□□□□ -1.97
RFX1P22670 Y_RNA.85-201ENST00000363014 111 ntBASIC2.72□□□□□ -1.97
RFX1P22670 SNORD114-30-201ENST00000364448 72 ntBASIC2.72□□□□□ -1.97
RFX1P22670 RNU6-1107P-201ENST00000364817 104 ntBASIC2.72□□□□□ -1.97
RFX1P22670 SNORA31.15-201ENST00000516771 132 ntBASIC2.72□□□□□ -1.97
RFX1P22670 AC022523.2-201ENST00000561045 150 ntBASIC2.72□□□□□ -1.97
RFX1P22670 U4.3-201ENST00000621047 82 ntBASIC2.72□□□□□ -1.97
RFX1P22670 KPNA5-202ENST00000368564 11311 ntAPPRIS P1 TSL 1 (best) BASIC2.72□□□□□ -1.97
RFX1P22670 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC2.72□□□□□ -1.97
RFX1P22670 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC2.71□□□□□ -1.98
RFX1P22670 AL022718.1-201ENST00000412004 84 ntBASIC2.71□□□□□ -1.98
RFX1P22670 POLR2J4-204ENST00000418424 324 ntBASIC2.71□□□□□ -1.98
RFX1P22670 snoU13.23-201ENST00000458863 104 ntBASIC2.71□□□□□ -1.98
RFX1P22670 AC108752.1-201ENST00000484679 576 ntTSL 5 BASIC2.71□□□□□ -1.98
RFX1P22670 RNU6-322P-201ENST00000516010 103 ntBASIC2.71□□□□□ -1.98
RFX1P22670 DNAJC19P9-201ENST00000555084 351 ntBASIC2.71□□□□□ -1.98
RFX1P22670 AC103810.6-201ENST00000606708 136 ntBASIC2.71□□□□□ -1.98
RFX1P22670 SAGE1-201ENST00000324447 2952 ntAPPRIS P2 TSL 5 BASIC2.7□□□□□ -1.98
RFX1P22670 SNORA6-201ENST00000384033 151 ntBASIC2.7□□□□□ -1.98
RFX1P22670 Y_RNA.430-201ENST00000384081 110 ntBASIC2.7□□□□□ -1.98
RFX1P22670 MIR27B-201ENST00000385129 97 ntBASIC2.7□□□□□ -1.98
RFX1P22670 RNA5SP89-201ENST00000410300 108 ntBASIC2.7□□□□□ -1.98
RFX1P22670 AL512326.2-201ENST00000426359 151 ntBASIC2.7□□□□□ -1.98
RFX1P22670 AC004812.1-201ENST00000540773 146 ntBASIC2.7□□□□□ -1.98
RFX1P22670 SNORA77B-201ENST00000578179 125 ntBASIC2.7□□□□□ -1.98
RFX1P22670 MIR4648-201ENST00000580107 72 ntBASIC2.7□□□□□ -1.98
RFX1P22670 AL035470.1-201ENST00000622571 220 ntBASIC2.7□□□□□ -1.98
RFX1P22670 XPO4-202ENST00000400602 9884 ntAPPRIS ALT1 TSL 5 BASIC2.69□□□□□ -1.98
RFX1P22670 Y_RNA.116-201ENST00000363292 103 ntBASIC2.69□□□□□ -1.98
RFX1P22670 Y_RNA.362-201ENST00000365518 110 ntBASIC2.69□□□□□ -1.98
RFX1P22670 Y_RNA.531-201ENST00000384589 121 ntBASIC2.69□□□□□ -1.98
RFX1P22670 TRAJ26-201ENST00000390511 60 ntAPPRIS P1 BASIC2.69□□□□□ -1.98
RFX1P22670 snoU13.16-201ENST00000459350 104 ntBASIC2.69□□□□□ -1.98
RFX1P22670 AC234781.5-201ENST00000508429 271 ntBASIC2.69□□□□□ -1.98
RFX1P22670 Y_RNA.676-201ENST00000516393 96 ntBASIC2.69□□□□□ -1.98
RFX1P22670 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC2.69□□□□□ -1.98
RFX1P22670 MIR4287-201ENST00000579398 78 ntBASIC2.69□□□□□ -1.98
RFX1P22670 MIR3163-201ENST00000581592 73 ntBASIC2.69□□□□□ -1.98
RFX1P22670 AC010297.1-201ENST00000623948 149 ntBASIC2.69□□□□□ -1.98
RFX1P22670 MIR4679-1-201ENST00000637619 75 ntBASIC2.69□□□□□ -1.98
RFX1P22670 AL589743.1-201ENST00000551932 2712 ntBASIC2.69□□□□□ -1.98
RFX1P22670 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC2.69□□□□□ -1.98
RFX1P22670 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC2.69□□□□□ -1.98
RFX1P22670 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC2.68□□□□□ -1.98
RFX1P22670 SNORA63.5-201ENST00000363548 123 ntBASIC2.68□□□□□ -1.98
RFX1P22670 RNU6-106P-201ENST00000384405 107 ntBASIC2.68□□□□□ -1.98
RFX1P22670 MIR513A1-201ENST00000385138 129 ntBASIC2.68□□□□□ -1.98
RFX1P22670 RNU6-913P-201ENST00000390913 95 ntBASIC2.68□□□□□ -1.98
RFX1P22670 SNORA26.6-201ENST00000391256 115 ntBASIC2.68□□□□□ -1.98
RFX1P22670 AL023284.1-201ENST00000403956 276 ntBASIC2.68□□□□□ -1.98
RFX1P22670 RNU6-168P-201ENST00000516189 101 ntBASIC2.68□□□□□ -1.98
RFX1P22670 IGHVII-40-1-201ENST00000517316 58 ntBASIC2.68□□□□□ -1.98
RFX1P22670 MIR4764-201ENST00000580680 88 ntBASIC2.68□□□□□ -1.98
RFX1P22670 AC090616.3-202ENST00000583346 205 ntTSL 2 BASIC2.68□□□□□ -1.98
RFX1P22670 AL020996.3-201ENST00000606617 222 ntBASIC2.68□□□□□ -1.98
RFX1P22670 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC2.68□□□□□ -1.98
RFX1P22670 SAMD9L-201ENST00000318238 7134 ntAPPRIS P1 TSL 1 (best) BASIC2.68□□□□□ -1.98
RFX1P22670 RNA5SP289-201ENST00000362332 137 ntBASIC2.67□□□□□ -1.98
RFX1P22670 RNU6-439P-201ENST00000384188 106 ntBASIC2.67□□□□□ -1.98
RFX1P22670 RNU6-482P-201ENST00000391068 107 ntBASIC2.67□□□□□ -1.98
RFX1P22670 AL591806.2-201ENST00000433122 173 ntBASIC2.67□□□□□ -1.98
RFX1P22670 MIR4299-201ENST00000577899 72 ntBASIC2.67□□□□□ -1.98
RFX1P22670 AL513534.2-201ENST00000603836 250 ntBASIC2.67□□□□□ -1.98
RFX1P22670 MIR8074-201ENST00000615081 81 ntBASIC2.67□□□□□ -1.98
RFX1P22670 MIR6717-201ENST00000622747 73 ntBASIC2.67□□□□□ -1.98
RFX1P22670 AC016717.2-201ENST00000609089 5141 ntBASIC2.67□□□□□ -1.98
RFX1P22670 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC2.67□□□□□ -1.98
RFX1P22670 Y_RNA.309-201ENST00000365046 111 ntBASIC2.66□□□□□ -1.98
RFX1P22670 SNORA51.10-201ENST00000384418 136 ntBASIC2.66□□□□□ -1.98
RFX1P22670 SNORA67.4-201ENST00000384688 142 ntBASIC2.66□□□□□ -1.98
RFX1P22670 MIR548D2-201ENST00000384955 97 ntBASIC2.66□□□□□ -1.98
RFX1P22670 MIR17-201ENST00000385012 84 ntBASIC2.66□□□□□ -1.98
RFX1P22670 AL451046.2-201ENST00000403074 277 ntBASIC2.66□□□□□ -1.98
RFX1P22670 AL031737.1-201ENST00000450125 223 ntBASIC2.66□□□□□ -1.98
RFX1P22670 AC015712.3-201ENST00000559380 164 ntBASIC2.66□□□□□ -1.98
RFX1P22670 AC015688.6-201ENST00000577737 104 ntBASIC2.66□□□□□ -1.98
RFX1P22670 MIR8055-201ENST00000610739 97 ntBASIC2.66□□□□□ -1.98
RFX1P22670 uc_338.28-201ENST00000612082 187 ntBASIC2.66□□□□□ -1.98
RFX1P22670 MIR6841-201ENST00000637129 72 ntBASIC2.66□□□□□ -1.98
RFX1P22670 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC2.65□□□□□ -1.98
RFX1P22670 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC2.65□□□□□ -1.98
RFX1P22670 Y_RNA.49-201ENST00000362714 112 ntBASIC2.65□□□□□ -1.99
RFX1P22670 Y_RNA.344-201ENST00000365381 112 ntBASIC2.65□□□□□ -1.99
RFX1P22670 RNA5SP259-201ENST00000365541 109 ntBASIC2.65□□□□□ -1.99
RFX1P22670 MIR520C-201ENST00000385005 87 ntBASIC2.65□□□□□ -1.99
RFX1P22670 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC2.65□□□□□ -1.99
RFX1P22670 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC2.65□□□□□ -1.99
RFX1P22670 RNU7-6P-201ENST00000516845 62 ntBASIC2.65□□□□□ -1.99
RFX1P22670 RNU6-548P-201ENST00000517083 115 ntBASIC2.65□□□□□ -1.99
RFX1P22670 RNU6-94P-201ENST00000607728 107 ntBASIC2.65□□□□□ -1.99
RFX1P22670 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC2.65□□□□□ -1.99
RFX1P22670 MIR6873-201ENST00000622788 63 ntBASIC2.65□□□□□ -1.99
RFX1P22670 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC2.65□□□□□ -1.99
RFX1P22670 SNORA22.1-201ENST00000362701 134 ntBASIC2.64□□□□□ -1.99
RFX1P22670 SNORD115-2-201ENST00000362842 82 ntBASIC2.64□□□□□ -1.99
RFX1P22670 Y_RNA.171-201ENST00000363760 102 ntBASIC2.64□□□□□ -1.99
RFX1P22670 SNORD115-20-201ENST00000365099 82 ntBASIC2.64□□□□□ -1.99
RFX1P22670 Y_RNA.323-201ENST00000365157 109 ntBASIC2.64□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 105.8 ms