Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 SNORD115-11-201ENST00000363616 82 ntBASIC1.17□□□□□ -2.22
MSH3P20585 SNORD115-5-201ENST00000363633 82 ntBASIC1.17□□□□□ -2.22
MSH3P20585 SNORD115-39-201ENST00000363694 82 ntBASIC1.17□□□□□ -2.22
MSH3P20585 SNORD115-4-201ENST00000363810 82 ntBASIC1.17□□□□□ -2.22
MSH3P20585 SNORD115-16-201ENST00000363887 82 ntBASIC1.17□□□□□ -2.22
MSH3P20585 SNORD115-6-201ENST00000363942 82 ntBASIC1.17□□□□□ -2.22
MSH3P20585 SNORD115-42-201ENST00000364273 82 ntBASIC1.17□□□□□ -2.22
MSH3P20585 SNORD115-15-201ENST00000364809 81 ntBASIC1.17□□□□□ -2.22
MSH3P20585 SNORD115-1-201ENST00000364961 82 ntBASIC1.17□□□□□ -2.22
MSH3P20585 SNORD115-26-201ENST00000365067 82 ntBASIC1.17□□□□□ -2.22
MSH3P20585 SNORD115-10-201ENST00000365073 81 ntBASIC1.17□□□□□ -2.22
MSH3P20585 SNORD115-43-201ENST00000365503 82 ntBASIC1.17□□□□□ -2.22
MSH3P20585 RNU6-597P-201ENST00000365620 102 ntBASIC1.17□□□□□ -2.22
MSH3P20585 SNORD115-36-201ENST00000365629 82 ntBASIC1.17□□□□□ -2.22
MSH3P20585 RNU6-1189P-201ENST00000383958 107 ntBASIC1.17□□□□□ -2.22
MSH3P20585 MIR570-201ENST00000384917 97 ntBASIC1.17□□□□□ -2.22
MSH3P20585 RNU6-239P-201ENST00000390990 99 ntBASIC1.17□□□□□ -2.22
MSH3P20585 SNORA40.5-201ENST00000391061 128 ntBASIC1.17□□□□□ -2.22
MSH3P20585 PCNPP3-201ENST00000393579 471 ntBASIC1.17□□□□□ -2.22
MSH3P20585 RNU6-1054P-201ENST00000411293 104 ntBASIC1.17□□□□□ -2.22
MSH3P20585 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC1.17□□□□□ -2.22
MSH3P20585 RPL39P39-201ENST00000455840 151 ntBASIC1.17□□□□□ -2.22
MSH3P20585 RPS26P48-201ENST00000491713 339 ntBASIC1.17□□□□□ -2.22
MSH3P20585 AC107958.3-201ENST00000553410 431 ntTSL 3 BASIC1.17□□□□□ -2.22
MSH3P20585 MIR3129-201ENST00000581095 76 ntBASIC1.17□□□□□ -2.22
MSH3P20585 SNORD115-40-201ENST00000606510 82 ntBASIC1.17□□□□□ -2.22
MSH3P20585 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC1.17□□□□□ -2.22
MSH3P20585 AC008133.2-201ENST00000624540 351 ntBASIC1.17□□□□□ -2.22
MSH3P20585 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC1.16□□□□□ -2.22
MSH3P20585 Y_RNA.241-201ENST00000364470 117 ntBASIC1.16□□□□□ -2.22
MSH3P20585 Y_RNA.270-201ENST00000364693 104 ntBASIC1.16□□□□□ -2.22
MSH3P20585 Y_RNA.337-201ENST00000365312 102 ntBASIC1.16□□□□□ -2.22
MSH3P20585 Y_RNA.393-201ENST00000383936 102 ntBASIC1.16□□□□□ -2.22
MSH3P20585 RNU6-886P-201ENST00000384319 105 ntBASIC1.16□□□□□ -2.22
MSH3P20585 Y_RNA.521-201ENST00000384560 114 ntBASIC1.16□□□□□ -2.22
MSH3P20585 Y_RNA.537-201ENST00000384626 109 ntBASIC1.16□□□□□ -2.22
MSH3P20585 AC107297.1-201ENST00000459991 176 ntBASIC1.16□□□□□ -2.22
MSH3P20585 AL133373.1-201ENST00000497098 94 ntBASIC1.16□□□□□ -2.22
MSH3P20585 SNORA18.4-201ENST00000516440 124 ntBASIC1.16□□□□□ -2.22
MSH3P20585 AC019288.1-201ENST00000557918 224 ntBASIC1.16□□□□□ -2.22
MSH3P20585 MIR4791-201ENST00000607666 84 ntBASIC1.16□□□□□ -2.22
MSH3P20585 MIR376A2-201ENST00000636782 80 ntBASIC1.16□□□□□ -2.22
MSH3P20585 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC1.16□□□□□ -2.22
MSH3P20585 Y_RNA.150-201ENST00000363562 102 ntBASIC1.15□□□□□ -2.23
MSH3P20585 SNORA25.7-201ENST00000364375 127 ntBASIC1.15□□□□□ -2.23
MSH3P20585 Y_RNA.440-201ENST00000384120 114 ntBASIC1.15□□□□□ -2.23
MSH3P20585 RNU6-768P-201ENST00000384683 107 ntBASIC1.15□□□□□ -2.23
MSH3P20585 RNU6-1067P-201ENST00000384752 107 ntBASIC1.15□□□□□ -2.23
MSH3P20585 MIR618-201ENST00000385287 98 ntBASIC1.15□□□□□ -2.23
MSH3P20585 RNU6-1135P-201ENST00000411083 103 ntBASIC1.15□□□□□ -2.23
MSH3P20585 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC1.15□□□□□ -2.23
MSH3P20585 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC1.15□□□□□ -2.23
MSH3P20585 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC1.15□□□□□ -2.23
MSH3P20585 AC243994.1-201ENST00000618627 109 ntBASIC1.15□□□□□ -2.23
MSH3P20585 MIR8065-201ENST00000620577 100 ntBASIC1.15□□□□□ -2.23
MSH3P20585 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.14□□□□□ -2.23
MSH3P20585 RNA5SP327-201ENST00000362494 101 ntBASIC1.14□□□□□ -2.23
MSH3P20585 SNORA24-201ENST00000384096 131 ntBASIC1.14□□□□□ -2.23
MSH3P20585 SNORA27-201ENST00000384323 126 ntBASIC1.14□□□□□ -2.23
MSH3P20585 Y_RNA.555-201ENST00000384673 110 ntBASIC1.14□□□□□ -2.23
MSH3P20585 MIR1285-1-201ENST00000408593 84 ntBASIC1.14□□□□□ -2.23
MSH3P20585 AL591704.2-201ENST00000421658 181 ntBASIC1.14□□□□□ -2.23
MSH3P20585 TRMT112P2-201ENST00000512910 132 ntBASIC1.14□□□□□ -2.23
MSH3P20585 RNU6-1053P-201ENST00000515930 101 ntBASIC1.14□□□□□ -2.23
MSH3P20585 AP003716.2-201ENST00000528260 108 ntBASIC1.14□□□□□ -2.23
MSH3P20585 MIR5197-201ENST00000583721 112 ntBASIC1.14□□□□□ -2.23
MSH3P20585 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC1.14□□□□□ -2.23
MSH3P20585 RNA5SP48-201ENST00000363969 126 ntBASIC1.13□□□□□ -2.23
MSH3P20585 Y_RNA.272-201ENST00000364696 102 ntBASIC1.13□□□□□ -2.23
MSH3P20585 SNORA51.10-201ENST00000384418 136 ntBASIC1.13□□□□□ -2.23
MSH3P20585 MIR624-201ENST00000385217 97 ntBASIC1.13□□□□□ -2.23
MSH3P20585 RNU6-394P-201ENST00000410735 107 ntBASIC1.13□□□□□ -2.23
MSH3P20585 RNA5SP127-201ENST00000411051 133 ntBASIC1.13□□□□□ -2.23
MSH3P20585 AC245047.7-201ENST00000440265 293 ntBASIC1.13□□□□□ -2.23
MSH3P20585 AC048334.1-201ENST00000477975 159 ntBASIC1.13□□□□□ -2.23
MSH3P20585 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC1.13□□□□□ -2.23
MSH3P20585 PRELID3BP2-201ENST00000605362 201 ntBASIC1.13□□□□□ -2.23
MSH3P20585 AC091895.1-201ENST00000624494 256 ntBASIC1.13□□□□□ -2.23
MSH3P20585 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC1.13□□□□□ -2.23
MSH3P20585 MIR4251-201ENST00000635819 61 ntBASIC1.13□□□□□ -2.23
MSH3P20585 SNORA25.8-201ENST00000364831 128 ntBASIC1.12□□□□□ -2.23
MSH3P20585 RNU6-1336P-201ENST00000383886 109 ntBASIC1.12□□□□□ -2.23
MSH3P20585 RPS29P28-201ENST00000446439 141 ntBASIC1.12□□□□□ -2.23
MSH3P20585 RPS29P24-201ENST00000486345 171 ntBASIC1.12□□□□□ -2.23
MSH3P20585 SNORA31.2-201ENST00000516019 134 ntBASIC1.12□□□□□ -2.23
MSH3P20585 MIR3646-201ENST00000578301 84 ntBASIC1.12□□□□□ -2.23
MSH3P20585 MTND1P7-201ENST00000632801 297 ntBASIC1.12□□□□□ -2.23
MSH3P20585 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.12□□□□□ -2.23
MSH3P20585 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC1.11□□□□□ -2.23
MSH3P20585 Y_RNA.180-201ENST00000363867 113 ntBASIC1.11□□□□□ -2.23
MSH3P20585 RNU6-1082P-201ENST00000364574 107 ntBASIC1.11□□□□□ -2.23
MSH3P20585 SNORA70.7-201ENST00000384159 133 ntBASIC1.11□□□□□ -2.23
MSH3P20585 Y_RNA.580-201ENST00000391004 95 ntBASIC1.11□□□□□ -2.23
MSH3P20585 RNU6-321P-201ENST00000410912 106 ntBASIC1.11□□□□□ -2.23
MSH3P20585 RNU7-67P-201ENST00000459003 62 ntBASIC1.11□□□□□ -2.23
MSH3P20585 SNORA31.4-201ENST00000516049 129 ntBASIC1.11□□□□□ -2.23
MSH3P20585 IGHVIII-67-2-201ENST00000519849 88 ntBASIC1.11□□□□□ -2.23
MSH3P20585 DNAJC19P2-201ENST00000593340 302 ntBASIC1.11□□□□□ -2.23
MSH3P20585 MIR3658-201ENST00000636291 56 ntBASIC1.11□□□□□ -2.23
MSH3P20585 RNA5SP264-201ENST00000363115 107 ntBASIC1.1□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 176 ms