Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 MIR4255-201ENST00000579351 72 ntBASIC1.54□□□□□ -2.16
LDB3O75112 MIR3683-201ENST00000580847 82 ntBASIC1.54□□□□□ -2.16
LDB3O75112 HSPE1P19-201ENST00000603327 295 ntBASIC1.54□□□□□ -2.16
LDB3O75112 SNORD18B-201ENST00000365659 72 ntBASIC1.53□□□□□ -2.16
LDB3O75112 RNU6-163P-201ENST00000384396 106 ntBASIC1.53□□□□□ -2.16
LDB3O75112 RNU6-476P-201ENST00000384726 107 ntBASIC1.53□□□□□ -2.16
LDB3O75112 MIR934-201ENST00000401241 83 ntBASIC1.53□□□□□ -2.16
LDB3O75112 JTBP1-201ENST00000441314 247 ntBASIC1.53□□□□□ -2.16
LDB3O75112 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC1.53□□□□□ -2.16
LDB3O75112 RN7SKP19-201ENST00000516016 252 ntBASIC1.53□□□□□ -2.16
LDB3O75112 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC1.53□□□□□ -2.16
LDB3O75112 MTND5P34-201ENST00000568888 325 ntBASIC1.53□□□□□ -2.16
LDB3O75112 AL513423.1-201ENST00000621695 132 ntBASIC1.53□□□□□ -2.16
LDB3O75112 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC1.53□□□□□ -2.17
LDB3O75112 Y_RNA.440-201ENST00000384120 114 ntBASIC1.52□□□□□ -2.17
LDB3O75112 RNU6-1144P-201ENST00000384247 104 ntBASIC1.52□□□□□ -2.17
LDB3O75112 MIR516B2-201ENST00000385190 85 ntBASIC1.52□□□□□ -2.17
LDB3O75112 RNY4P18-201ENST00000391107 89 ntBASIC1.52□□□□□ -2.17
LDB3O75112 MIR1267-201ENST00000408723 78 ntBASIC1.52□□□□□ -2.17
LDB3O75112 RNU6-1064P-201ENST00000410626 104 ntBASIC1.52□□□□□ -2.17
LDB3O75112 PGBD4P5-201ENST00000445958 426 ntBASIC1.52□□□□□ -2.17
LDB3O75112 RNU6-919P-201ENST00000516731 104 ntBASIC1.52□□□□□ -2.17
LDB3O75112 AC134878.1-201ENST00000619901 243 ntBASIC1.52□□□□□ -2.17
LDB3O75112 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC1.52□□□□□ -2.17
LDB3O75112 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.52□□□□□ -2.17
LDB3O75112 Y_RNA.336-201ENST00000365307 109 ntBASIC1.51□□□□□ -2.17
LDB3O75112 RNU6-1056P-201ENST00000383996 107 ntBASIC1.51□□□□□ -2.17
LDB3O75112 MIR526A1-201ENST00000384897 85 ntBASIC1.51□□□□□ -2.17
LDB3O75112 MIR1263-201ENST00000408324 86 ntBASIC1.51□□□□□ -2.17
LDB3O75112 AC015922.2-201ENST00000435593 184 ntBASIC1.51□□□□□ -2.17
LDB3O75112 AC005908.1-201ENST00000468701 347 ntBASIC1.51□□□□□ -2.17
LDB3O75112 CYCTP-201ENST00000504253 315 ntBASIC1.51□□□□□ -2.17
LDB3O75112 RNU6-240P-201ENST00000516098 97 ntBASIC1.51□□□□□ -2.17
LDB3O75112 RN7SKP179-201ENST00000516126 217 ntBASIC1.51□□□□□ -2.17
LDB3O75112 RNU7-181P-201ENST00000517234 74 ntBASIC1.51□□□□□ -2.17
LDB3O75112 AP003484.1-201ENST00000530974 250 ntBASIC1.51□□□□□ -2.17
LDB3O75112 AC015712.3-201ENST00000559380 164 ntBASIC1.51□□□□□ -2.17
LDB3O75112 MIR4778-201ENST00000577635 80 ntBASIC1.51□□□□□ -2.17
LDB3O75112 MIR3124-201ENST00000582636 67 ntBASIC1.51□□□□□ -2.17
LDB3O75112 RNU6-1123P-201ENST00000362347 106 ntBASIC1.5□□□□□ -2.17
LDB3O75112 RNU1-17P-201ENST00000363022 152 ntBASIC1.5□□□□□ -2.17
LDB3O75112 RNU6-647P-201ENST00000364243 107 ntBASIC1.5□□□□□ -2.17
LDB3O75112 Y_RNA.242-201ENST00000364473 110 ntBASIC1.5□□□□□ -2.17
LDB3O75112 SNORA2.2-201ENST00000365473 135 ntBASIC1.5□□□□□ -2.17
LDB3O75112 RNU6-1189P-201ENST00000383958 107 ntBASIC1.5□□□□□ -2.17
LDB3O75112 RNU6-203P-201ENST00000384038 104 ntBASIC1.5□□□□□ -2.17
LDB3O75112 MIR194-1-201ENST00000384892 85 ntBASIC1.5□□□□□ -2.17
LDB3O75112 MIR548A1-201ENST00000385041 97 ntBASIC1.5□□□□□ -2.17
LDB3O75112 MT-TI-201ENST00000387365 69 ntBASIC1.5□□□□□ -2.17
LDB3O75112 AC004965.1-201ENST00000413033 213 ntBASIC1.5□□□□□ -2.17
LDB3O75112 RPL31P63-201ENST00000422565 375 ntBASIC1.5□□□□□ -2.17
LDB3O75112 snoU13.9-201ENST00000458927 103 ntBASIC1.5□□□□□ -2.17
LDB3O75112 RNU6-589P-201ENST00000516485 107 ntBASIC1.5□□□□□ -2.17
LDB3O75112 MIR3122-201ENST00000577243 73 ntBASIC1.5□□□□□ -2.17
LDB3O75112 AC027279.3-201ENST00000625055 122 ntBASIC1.5□□□□□ -2.17
LDB3O75112 MTND5P18-201ENST00000445624 1801 ntBASIC1.5□□□□□ -2.17
LDB3O75112 RNU6-349P-201ENST00000362402 107 ntBASIC1.49□□□□□ -2.17
LDB3O75112 Y_RNA.35-201ENST00000362601 101 ntBASIC1.49□□□□□ -2.17
LDB3O75112 RNA5SP363-201ENST00000365072 115 ntBASIC1.49□□□□□ -2.17
LDB3O75112 MIR660-201ENST00000385235 97 ntBASIC1.49□□□□□ -2.17
LDB3O75112 AL161935.2-201ENST00000414627 60 ntBASIC1.49□□□□□ -2.17
LDB3O75112 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC1.49□□□□□ -2.17
LDB3O75112 RNU7-12P-201ENST00000516030 62 ntBASIC1.49□□□□□ -2.17
LDB3O75112 SNORA77B-201ENST00000578179 125 ntBASIC1.49□□□□□ -2.17
LDB3O75112 AC025166.1-201ENST00000612411 163 ntBASIC1.49□□□□□ -2.17
LDB3O75112 SNORD3E-202ENST00000627253 216 ntBASIC1.49□□□□□ -2.17
LDB3O75112 AC095038.3-201ENST00000634439 195 ntBASIC1.49□□□□□ -2.17
LDB3O75112 LMBR1-222ENST00000638959 93 ntTSL 5 BASIC1.49□□□□□ -2.17
LDB3O75112 MIR342-201ENST00000362212 99 ntBASIC1.48□□□□□ -2.17
LDB3O75112 RNU6-834P-201ENST00000362367 110 ntBASIC1.48□□□□□ -2.17
LDB3O75112 RNU6-833P-201ENST00000363486 107 ntBASIC1.48□□□□□ -2.17
LDB3O75112 RNU6-153P-201ENST00000364422 104 ntBASIC1.48□□□□□ -2.17
LDB3O75112 Y_RNA.410-201ENST00000383992 113 ntBASIC1.48□□□□□ -2.17
LDB3O75112 SNORD28B-201ENST00000390993 75 ntBASIC1.48□□□□□ -2.17
LDB3O75112 SNX2P2-201ENST00000424553 323 ntBASIC1.48□□□□□ -2.17
LDB3O75112 HMGN2P32-201ENST00000444648 269 ntBASIC1.48□□□□□ -2.17
LDB3O75112 RPS26P48-201ENST00000491713 339 ntBASIC1.48□□□□□ -2.17
LDB3O75112 Y_RNA.709-201ENST00000516952 92 ntBASIC1.48□□□□□ -2.17
LDB3O75112 MIR4285-201ENST00000581001 85 ntBASIC1.48□□□□□ -2.17
LDB3O75112 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC1.47□□□□□ -2.17
LDB3O75112 RNU6-457P-201ENST00000363999 107 ntBASIC1.47□□□□□ -2.17
LDB3O75112 RNU4-16P-201ENST00000364737 141 ntBASIC1.47□□□□□ -2.17
LDB3O75112 Y_RNA.351-201ENST00000365436 96 ntBASIC1.47□□□□□ -2.17
LDB3O75112 RNU6-1104P-201ENST00000384723 104 ntBASIC1.47□□□□□ -2.17
LDB3O75112 MIR570-201ENST00000384917 97 ntBASIC1.47□□□□□ -2.17
LDB3O75112 5S_rRNA.2-201ENST00000391293 112 ntBASIC1.47□□□□□ -2.17
LDB3O75112 MTATP6P21-201ENST00000440681 189 ntBASIC1.47□□□□□ -2.17
LDB3O75112 RNU7-45P-201ENST00000459460 63 ntBASIC1.47□□□□□ -2.17
LDB3O75112 AC022523.2-201ENST00000561045 150 ntBASIC1.47□□□□□ -2.17
LDB3O75112 BX248123.2-201ENST00000606318 124 ntBASIC1.47□□□□□ -2.17
LDB3O75112 TP73-AS1.1-201ENST00000611447 161 ntBASIC1.47□□□□□ -2.17
LDB3O75112 AL137067.1-201ENST00000615933 120 ntBASIC1.47□□□□□ -2.17
LDB3O75112 AL353997.5-201ENST00000618886 171 ntBASIC1.47□□□□□ -2.17
LDB3O75112 AC091932.4-201ENST00000623386 200 ntBASIC1.47□□□□□ -2.17
LDB3O75112 U6.95-201ENST00000636931 70 ntBASIC1.47□□□□□ -2.17
LDB3O75112 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC1.46□□□□□ -2.18
LDB3O75112 RNA5SP99-201ENST00000364020 114 ntBASIC1.46□□□□□ -2.18
LDB3O75112 Y_RNA.528-201ENST00000384575 108 ntBASIC1.46□□□□□ -2.18
LDB3O75112 Y_RNA.549-201ENST00000384657 102 ntBASIC1.46□□□□□ -2.18
LDB3O75112 RNU6-482P-201ENST00000391068 107 ntBASIC1.46□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 122.3 ms