Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 RNU2-35P-201ENST00000516446 142 ntBASIC1.85□□□□□ -2.11
HOXA3O43365 AC007012.1-201ENST00000567192 175 ntBASIC1.85□□□□□ -2.11
HOXA3O43365 AC021613.1-201ENST00000623880 111 ntBASIC1.85□□□□□ -2.11
HOXA3O43365 AC005336.3-201ENST00000623833 2679 ntBASIC1.85□□□□□ -2.11
HOXA3O43365 AC092881.1-201ENST00000638218 2733 ntBASIC1.85□□□□□ -2.11
HOXA3O43365 TAB2-205ENST00000538427 4240 ntAPPRIS P1 TSL 5 BASIC1.85□□□□□ -2.11
HOXA3O43365 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC1.84□□□□□ -2.11
HOXA3O43365 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC1.84□□□□□ -2.11
HOXA3O43365 RNU6-153P-201ENST00000364422 104 ntBASIC1.84□□□□□ -2.11
HOXA3O43365 SNORA24-201ENST00000384096 131 ntBASIC1.84□□□□□ -2.11
HOXA3O43365 RNU6-1104P-201ENST00000384723 104 ntBASIC1.84□□□□□ -2.11
HOXA3O43365 RNU6-1067P-201ENST00000384752 107 ntBASIC1.84□□□□□ -2.11
HOXA3O43365 MIR759-201ENST00000390224 91 ntBASIC1.84□□□□□ -2.11
HOXA3O43365 RPL23AP6-201ENST00000446637 472 ntBASIC1.84□□□□□ -2.11
HOXA3O43365 RNU7-123P-201ENST00000515911 60 ntBASIC1.84□□□□□ -2.11
HOXA3O43365 RNU7-53P-201ENST00000516705 60 ntBASIC1.84□□□□□ -2.11
HOXA3O43365 MIR4791-201ENST00000607666 84 ntBASIC1.84□□□□□ -2.11
HOXA3O43365 AL160408.5-201ENST00000607759 526 ntTSL 4 BASIC1.84□□□□□ -2.11
HOXA3O43365 AC067747.1-201ENST00000608026 250 ntBASIC1.84□□□□□ -2.11
HOXA3O43365 ZNFX1-AS1_2.1-201ENST00000610973 93 ntBASIC1.84□□□□□ -2.11
HOXA3O43365 AP000648.3-201ENST00000623539 4507 ntBASIC1.83□□□□□ -2.12
HOXA3O43365 SAGE1-201ENST00000324447 2952 ntAPPRIS P2 TSL 5 BASIC1.83□□□□□ -2.12
HOXA3O43365 MIRLET7G-201ENST00000362280 84 ntBASIC1.83□□□□□ -2.12
HOXA3O43365 Y_RNA.213-201ENST00000364178 111 ntBASIC1.83□□□□□ -2.12
HOXA3O43365 Y_RNA.537-201ENST00000384626 109 ntBASIC1.83□□□□□ -2.12
HOXA3O43365 MIR653-201ENST00000385279 96 ntBASIC1.83□□□□□ -2.12
HOXA3O43365 MT-TI-201ENST00000387365 69 ntBASIC1.83□□□□□ -2.12
HOXA3O43365 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC1.83□□□□□ -2.12
HOXA3O43365 RNU6-1319P-201ENST00000390855 104 ntBASIC1.83□□□□□ -2.12
HOXA3O43365 RNU6-747P-201ENST00000390928 104 ntBASIC1.83□□□□□ -2.12
HOXA3O43365 RNU6-241P-201ENST00000391148 104 ntBASIC1.83□□□□□ -2.12
HOXA3O43365 RNU6-177P-201ENST00000411257 104 ntBASIC1.83□□□□□ -2.12
HOXA3O43365 AC022254.1-201ENST00000567857 235 ntBASIC1.83□□□□□ -2.12
HOXA3O43365 MIR4287-201ENST00000579398 78 ntBASIC1.83□□□□□ -2.12
HOXA3O43365 MIR5007-201ENST00000583098 95 ntBASIC1.83□□□□□ -2.12
HOXA3O43365 MIR6895-201ENST00000613497 78 ntBASIC1.83□□□□□ -2.12
HOXA3O43365 AC009831.4-201ENST00000620744 325 ntBASIC1.83□□□□□ -2.12
HOXA3O43365 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC1.83□□□□□ -2.12
HOXA3O43365 ZBTB6-201ENST00000373659 4106 ntAPPRIS P1 TSL 1 (best) BASIC1.83□□□□□ -2.12
HOXA3O43365 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC1.82□□□□□ -2.12
HOXA3O43365 RNY4P6-201ENST00000363667 96 ntBASIC1.82□□□□□ -2.12
HOXA3O43365 RNU6-755P-201ENST00000364400 103 ntBASIC1.82□□□□□ -2.12
HOXA3O43365 RNA5SP259-201ENST00000365541 109 ntBASIC1.82□□□□□ -2.12
HOXA3O43365 MIR1289-2-201ENST00000408360 111 ntBASIC1.82□□□□□ -2.12
HOXA3O43365 RNA5SP144-201ENST00000410846 116 ntBASIC1.82□□□□□ -2.12
HOXA3O43365 RNU7-73P-201ENST00000458743 63 ntBASIC1.82□□□□□ -2.12
HOXA3O43365 AC022523.2-201ENST00000561045 150 ntBASIC1.82□□□□□ -2.12
HOXA3O43365 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC1.82□□□□□ -2.12
HOXA3O43365 MIR3152-201ENST00000579801 74 ntBASIC1.82□□□□□ -2.12
HOXA3O43365 MIR4769-201ENST00000584126 77 ntBASIC1.82□□□□□ -2.12
HOXA3O43365 AC034238.1-213ENST00000611148 150 ntTSL 5 BASIC1.82□□□□□ -2.12
HOXA3O43365 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC1.81□□□□□ -2.12
HOXA3O43365 MIR520C-201ENST00000385005 87 ntBASIC1.81□□□□□ -2.12
HOXA3O43365 MIR221-201ENST00000385135 110 ntBASIC1.81□□□□□ -2.12
HOXA3O43365 MIR513A1-201ENST00000385138 129 ntBASIC1.81□□□□□ -2.12
HOXA3O43365 RNU6-913P-201ENST00000390913 95 ntBASIC1.81□□□□□ -2.12
HOXA3O43365 AL022718.1-201ENST00000412004 84 ntBASIC1.81□□□□□ -2.12
HOXA3O43365 POLR2J4-204ENST00000418424 324 ntBASIC1.81□□□□□ -2.12
HOXA3O43365 AL512326.2-201ENST00000426359 151 ntBASIC1.81□□□□□ -2.12
HOXA3O43365 RNU6-412P-201ENST00000516434 106 ntBASIC1.81□□□□□ -2.12
HOXA3O43365 RNU7-43P-201ENST00000516554 64 ntBASIC1.81□□□□□ -2.12
HOXA3O43365 MIR4764-201ENST00000580680 88 ntBASIC1.81□□□□□ -2.12
HOXA3O43365 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC1.81□□□□□ -2.12
HOXA3O43365 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC1.8□□□□□ -2.12
HOXA3O43365 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC1.8□□□□□ -2.12
HOXA3O43365 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC1.8□□□□□ -2.12
HOXA3O43365 MIR21-201ENST00000362134 72 ntBASIC1.8□□□□□ -2.12
HOXA3O43365 RNU6-661P-201ENST00000362409 107 ntBASIC1.8□□□□□ -2.12
HOXA3O43365 SNORD114-1-201ENST00000362705 72 ntBASIC1.8□□□□□ -2.12
HOXA3O43365 Y_RNA.281-201ENST00000364774 94 ntBASIC1.8□□□□□ -2.12
HOXA3O43365 SNORA51.10-201ENST00000384418 136 ntBASIC1.8□□□□□ -2.12
HOXA3O43365 Y_RNA.549-201ENST00000384657 102 ntBASIC1.8□□□□□ -2.12
HOXA3O43365 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC1.8□□□□□ -2.12
HOXA3O43365 RNU6-322P-201ENST00000516010 103 ntBASIC1.8□□□□□ -2.12
HOXA3O43365 AC004812.1-201ENST00000540773 146 ntBASIC1.8□□□□□ -2.12
HOXA3O43365 DNAJC19P9-201ENST00000555084 351 ntBASIC1.8□□□□□ -2.12
HOXA3O43365 MIR4299-201ENST00000577899 72 ntBASIC1.8□□□□□ -2.12
HOXA3O43365 SNORA77B-201ENST00000578179 125 ntBASIC1.8□□□□□ -2.12
HOXA3O43365 MIR4713-201ENST00000582691 75 ntBASIC1.8□□□□□ -2.12
HOXA3O43365 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC1.8□□□□□ -2.12
HOXA3O43365 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC1.79□□□□□ -2.12
HOXA3O43365 ZMYM1-203ENST00000373330 4203 ntAPPRIS P1 TSL 1 (best) BASIC1.79□□□□□ -2.12
HOXA3O43365 SNORA64-201ENST00000384674 134 ntBASIC1.79□□□□□ -2.12
HOXA3O43365 SNORD12C-201ENST00000386307 89 ntBASIC1.79□□□□□ -2.12
HOXA3O43365 SNORA26.6-201ENST00000391256 115 ntBASIC1.79□□□□□ -2.12
HOXA3O43365 AL023284.1-201ENST00000403956 276 ntBASIC1.79□□□□□ -2.12
HOXA3O43365 RNA5SP261-201ENST00000410536 106 ntBASIC1.79□□□□□ -2.12
HOXA3O43365 RNU6-1190P-201ENST00000410811 104 ntBASIC1.79□□□□□ -2.12
HOXA3O43365 RNU6-893P-201ENST00000458841 100 ntBASIC1.79□□□□□ -2.12
HOXA3O43365 AC108752.1-201ENST00000484679 576 ntTSL 5 BASIC1.79□□□□□ -2.12
HOXA3O43365 MIR4679-2-201ENST00000578358 77 ntBASIC1.79□□□□□ -2.12
HOXA3O43365 AL020996.3-201ENST00000606617 222 ntBASIC1.79□□□□□ -2.12
HOXA3O43365 MIR8074-201ENST00000615081 81 ntBASIC1.79□□□□□ -2.12
HOXA3O43365 MIR6132-201ENST00000622083 109 ntBASIC1.79□□□□□ -2.12
HOXA3O43365 MIR6766-201ENST00000622641 72 ntBASIC1.79□□□□□ -2.12
HOXA3O43365 MIR6717-201ENST00000622747 73 ntBASIC1.79□□□□□ -2.12
HOXA3O43365 AC131280.1-202ENST00000624067 4211 ntBASIC1.78□□□□□ -2.12
HOXA3O43365 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC1.78□□□□□ -2.12
HOXA3O43365 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC1.78□□□□□ -2.12
HOXA3O43365 Y_RNA.531-201ENST00000384589 121 ntBASIC1.78□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 260.9 ms