Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 HSPE1P24-201ENST00000450782 238 ntBASIC1.84□□□□□ -2.11
LIMCH1Q9UPQ0 RNA5SP458-201ENST00000516188 119 ntBASIC1.84□□□□□ -2.11
LIMCH1Q9UPQ0 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC1.84□□□□□ -2.11
LIMCH1Q9UPQ0 AC106754.2-201ENST00000623006 233 ntBASIC1.84□□□□□ -2.11
LIMCH1Q9UPQ0 MIR3658-201ENST00000636291 56 ntBASIC1.84□□□□□ -2.11
LIMCH1Q9UPQ0 RNU4-11P-201ENST00000365287 132 ntBASIC1.83□□□□□ -2.12
LIMCH1Q9UPQ0 Y_RNA.568-201ENST00000384742 113 ntBASIC1.83□□□□□ -2.12
LIMCH1Q9UPQ0 MIR624-201ENST00000385217 97 ntBASIC1.83□□□□□ -2.12
LIMCH1Q9UPQ0 RNU6ATAC3P-201ENST00000387974 126 ntBASIC1.83□□□□□ -2.12
LIMCH1Q9UPQ0 AL451046.2-201ENST00000403074 277 ntBASIC1.83□□□□□ -2.12
LIMCH1Q9UPQ0 RNA5SP127-201ENST00000411051 133 ntBASIC1.83□□□□□ -2.12
LIMCH1Q9UPQ0 RNU4-57P-201ENST00000515980 135 ntBASIC1.83□□□□□ -2.12
LIMCH1Q9UPQ0 SNORA18.4-201ENST00000516440 124 ntBASIC1.83□□□□□ -2.12
LIMCH1Q9UPQ0 AC132825.6-201ENST00000638861 357 ntBASIC1.83□□□□□ -2.12
LIMCH1Q9UPQ0 AL157777.2-201ENST00000258070 137 ntBASIC1.82□□□□□ -2.12
LIMCH1Q9UPQ0 MIR302D-201ENST00000362275 68 ntBASIC1.82□□□□□ -2.12
LIMCH1Q9UPQ0 Y_RNA.37-201ENST00000362606 108 ntBASIC1.82□□□□□ -2.12
LIMCH1Q9UPQ0 U8.17-201ENST00000391292 132 ntBASIC1.82□□□□□ -2.12
LIMCH1Q9UPQ0 AC107297.1-201ENST00000459991 176 ntBASIC1.82□□□□□ -2.12
LIMCH1Q9UPQ0 AC079140.2-201ENST00000506193 142 ntBASIC1.82□□□□□ -2.12
LIMCH1Q9UPQ0 RNU6-917P-201ENST00000516294 104 ntBASIC1.82□□□□□ -2.12
LIMCH1Q9UPQ0 SNORA25.15-201ENST00000516487 89 ntBASIC1.82□□□□□ -2.12
LIMCH1Q9UPQ0 AC112693.2-201ENST00000556538 232 ntBASIC1.82□□□□□ -2.12
LIMCH1Q9UPQ0 MIR3683-201ENST00000580847 82 ntBASIC1.82□□□□□ -2.12
LIMCH1Q9UPQ0 MIR3129-201ENST00000581095 76 ntBASIC1.82□□□□□ -2.12
LIMCH1Q9UPQ0 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC1.82□□□□□ -2.12
LIMCH1Q9UPQ0 MIR8063-201ENST00000621930 81 ntBASIC1.82□□□□□ -2.12
LIMCH1Q9UPQ0 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC1.82□□□□□ -2.12
LIMCH1Q9UPQ0 SNORD1A-201ENST00000364968 72 ntBASIC1.81□□□□□ -2.12
LIMCH1Q9UPQ0 RNU6-81P-201ENST00000365608 104 ntBASIC1.81□□□□□ -2.12
LIMCH1Q9UPQ0 RNU6-1189P-201ENST00000383958 107 ntBASIC1.81□□□□□ -2.12
LIMCH1Q9UPQ0 SNORA1-201ENST00000384107 130 ntBASIC1.81□□□□□ -2.12
LIMCH1Q9UPQ0 RNU6-1067P-201ENST00000384752 107 ntBASIC1.81□□□□□ -2.12
LIMCH1Q9UPQ0 MIR569-201ENST00000385228 96 ntBASIC1.81□□□□□ -2.12
LIMCH1Q9UPQ0 MIR320A-201ENST00000385302 82 ntBASIC1.81□□□□□ -2.12
LIMCH1Q9UPQ0 5S_rRNA.2-201ENST00000391293 112 ntBASIC1.81□□□□□ -2.12
LIMCH1Q9UPQ0 SNORA26.9-201ENST00000391322 122 ntBASIC1.81□□□□□ -2.12
LIMCH1Q9UPQ0 MIR934-201ENST00000401241 83 ntBASIC1.81□□□□□ -2.12
LIMCH1Q9UPQ0 RNU6-588P-201ENST00000410281 105 ntBASIC1.81□□□□□ -2.12
LIMCH1Q9UPQ0 AF228730.3-201ENST00000436691 102 ntBASIC1.81□□□□□ -2.12
LIMCH1Q9UPQ0 AC005908.1-201ENST00000468701 347 ntBASIC1.81□□□□□ -2.12
LIMCH1Q9UPQ0 SNORA74.3-201ENST00000517108 154 ntBASIC1.81□□□□□ -2.12
LIMCH1Q9UPQ0 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC1.8□□□□□ -2.12
LIMCH1Q9UPQ0 RNA5SP99-201ENST00000364020 114 ntBASIC1.8□□□□□ -2.12
LIMCH1Q9UPQ0 RNU6-1065P-201ENST00000384513 106 ntBASIC1.8□□□□□ -2.12
LIMCH1Q9UPQ0 SNORD77.3-201ENST00000391113 65 ntBASIC1.8□□□□□ -2.12
LIMCH1Q9UPQ0 RNU1-78P-201ENST00000391248 165 ntBASIC1.8□□□□□ -2.12
LIMCH1Q9UPQ0 SNX2P2-201ENST00000424553 323 ntBASIC1.8□□□□□ -2.12
LIMCH1Q9UPQ0 AC013248.1-201ENST00000455092 232 ntTSL 3 BASIC1.8□□□□□ -2.12
LIMCH1Q9UPQ0 SNORD123-201ENST00000459473 70 ntBASIC1.8□□□□□ -2.12
LIMCH1Q9UPQ0 AC092991.1-201ENST00000477176 376 ntBASIC1.8□□□□□ -2.12
LIMCH1Q9UPQ0 MIR4422-201ENST00000581938 83 ntBASIC1.8□□□□□ -2.12
LIMCH1Q9UPQ0 AL357312.1-201ENST00000603879 298 ntBASIC1.8□□□□□ -2.12
LIMCH1Q9UPQ0 AL353997.5-201ENST00000618886 171 ntBASIC1.8□□□□□ -2.12
LIMCH1Q9UPQ0 U2.22-201ENST00000636441 106 ntBASIC1.8□□□□□ -2.12
LIMCH1Q9UPQ0 SNORA40.5-201ENST00000391061 128 ntBASIC1.79□□□□□ -2.12
LIMCH1Q9UPQ0 MIR1304-201ENST00000408243 91 ntBASIC1.79□□□□□ -2.12
LIMCH1Q9UPQ0 CYCSP49-201ENST00000420810 319 ntBASIC1.79□□□□□ -2.12
LIMCH1Q9UPQ0 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC1.79□□□□□ -2.12
LIMCH1Q9UPQ0 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC1.79□□□□□ -2.12
LIMCH1Q9UPQ0 AC023790.1-201ENST00000482174 347 ntBASIC1.79□□□□□ -2.12
LIMCH1Q9UPQ0 SNORA25.12-201ENST00000516202 82 ntBASIC1.79□□□□□ -2.12
LIMCH1Q9UPQ0 RNU7-43P-201ENST00000516554 64 ntBASIC1.79□□□□□ -2.12
LIMCH1Q9UPQ0 AP003484.1-201ENST00000530974 250 ntBASIC1.79□□□□□ -2.12
LIMCH1Q9UPQ0 BX248123.2-201ENST00000606318 124 ntBASIC1.79□□□□□ -2.12
LIMCH1Q9UPQ0 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC1.79□□□□□ -2.12
LIMCH1Q9UPQ0 AC010332.2-201ENST00000613083 1904 ntBASIC1.79□□□□□ -2.12
LIMCH1Q9UPQ0 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC1.79□□□□□ -2.12
LIMCH1Q9UPQ0 SNORD115-34-201ENST00000362441 82 ntBASIC1.78□□□□□ -2.12
LIMCH1Q9UPQ0 SNORD115-12-201ENST00000362583 82 ntBASIC1.78□□□□□ -2.12
LIMCH1Q9UPQ0 SNORD115-29-201ENST00000362834 82 ntBASIC1.78□□□□□ -2.12
LIMCH1Q9UPQ0 SNORD115-9-201ENST00000362912 82 ntBASIC1.78□□□□□ -2.12
LIMCH1Q9UPQ0 SNORD115-21-201ENST00000362963 81 ntBASIC1.78□□□□□ -2.12
LIMCH1Q9UPQ0 SNORD115-14-201ENST00000363090 81 ntBASIC1.78□□□□□ -2.12
LIMCH1Q9UPQ0 SNORD115-13-201ENST00000363358 82 ntBASIC1.78□□□□□ -2.12
LIMCH1Q9UPQ0 SNORD115-41-201ENST00000363608 82 ntBASIC1.78□□□□□ -2.12
LIMCH1Q9UPQ0 SNORD115-11-201ENST00000363616 82 ntBASIC1.78□□□□□ -2.12
LIMCH1Q9UPQ0 SNORD115-5-201ENST00000363633 82 ntBASIC1.78□□□□□ -2.12
LIMCH1Q9UPQ0 SNORD115-39-201ENST00000363694 82 ntBASIC1.78□□□□□ -2.12
LIMCH1Q9UPQ0 SNORD115-4-201ENST00000363810 82 ntBASIC1.78□□□□□ -2.12
LIMCH1Q9UPQ0 SNORD115-16-201ENST00000363887 82 ntBASIC1.78□□□□□ -2.12
LIMCH1Q9UPQ0 SNORD115-6-201ENST00000363942 82 ntBASIC1.78□□□□□ -2.12
LIMCH1Q9UPQ0 SNORD115-42-201ENST00000364273 82 ntBASIC1.78□□□□□ -2.12
LIMCH1Q9UPQ0 RNU6-1082P-201ENST00000364574 107 ntBASIC1.78□□□□□ -2.12
LIMCH1Q9UPQ0 SNORD115-15-201ENST00000364809 81 ntBASIC1.78□□□□□ -2.12
LIMCH1Q9UPQ0 SNORD115-1-201ENST00000364961 82 ntBASIC1.78□□□□□ -2.12
LIMCH1Q9UPQ0 SNORD115-26-201ENST00000365067 82 ntBASIC1.78□□□□□ -2.12
LIMCH1Q9UPQ0 SNORD115-10-201ENST00000365073 81 ntBASIC1.78□□□□□ -2.12
LIMCH1Q9UPQ0 SNORD115-43-201ENST00000365503 82 ntBASIC1.78□□□□□ -2.12
LIMCH1Q9UPQ0 SNORD115-36-201ENST00000365629 82 ntBASIC1.78□□□□□ -2.12
LIMCH1Q9UPQ0 RNU6-997P-201ENST00000384725 107 ntBASIC1.78□□□□□ -2.12
LIMCH1Q9UPQ0 AL606753.1-201ENST00000427435 87 ntBASIC1.78□□□□□ -2.12
LIMCH1Q9UPQ0 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC1.78□□□□□ -2.12
LIMCH1Q9UPQ0 RNU7-197P-201ENST00000458836 62 ntBASIC1.78□□□□□ -2.12
LIMCH1Q9UPQ0 RNU6-426P-201ENST00000516464 97 ntBASIC1.78□□□□□ -2.12
LIMCH1Q9UPQ0 SNORA18.7-201ENST00000516910 131 ntBASIC1.78□□□□□ -2.12
LIMCH1Q9UPQ0 AC131055.1-201ENST00000584626 316 ntBASIC1.78□□□□□ -2.12
LIMCH1Q9UPQ0 SNORD115-40-201ENST00000606510 82 ntBASIC1.78□□□□□ -2.12
LIMCH1Q9UPQ0 GHRLOS.1-201ENST00000610995 70 ntBASIC1.78□□□□□ -2.12
LIMCH1Q9UPQ0 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC1.78□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 451.5 ms