Protein–RNA interactions for Protein: Q9UIU6

SIX4, Homeobox protein SIX4, humanhuman

Predictions only

Length 781 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4Q9UIU6 SNORA1-201ENST00000384107 130 ntBASIC1.41□□□□□ -2.18
SIX4Q9UIU6 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.41□□□□□ -2.18
SIX4Q9UIU6 RNU7-121P-201ENST00000516604 62 ntBASIC1.41□□□□□ -2.18
SIX4Q9UIU6 RNU6-255P-201ENST00000516957 105 ntBASIC1.41□□□□□ -2.18
SIX4Q9UIU6 MTND5P41-201ENST00000517498 206 ntBASIC1.41□□□□□ -2.18
SIX4Q9UIU6 MIR3144-201ENST00000579460 79 ntBASIC1.41□□□□□ -2.18
SIX4Q9UIU6 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.4□□□□□ -2.18
SIX4Q9UIU6 Y_RNA.393-201ENST00000383936 102 ntBASIC1.4□□□□□ -2.19
SIX4Q9UIU6 Y_RNA.398-201ENST00000383952 99 ntBASIC1.4□□□□□ -2.19
SIX4Q9UIU6 SNORD116-18-201ENST00000383961 92 ntBASIC1.4□□□□□ -2.19
SIX4Q9UIU6 Y_RNA.521-201ENST00000384560 114 ntBASIC1.4□□□□□ -2.19
SIX4Q9UIU6 MIR136-201ENST00000385207 82 ntBASIC1.4□□□□□ -2.19
SIX4Q9UIU6 MIR758-201ENST00000390227 88 ntBASIC1.4□□□□□ -2.19
SIX4Q9UIU6 SNORA40.6-201ENST00000391153 128 ntBASIC1.4□□□□□ -2.19
SIX4Q9UIU6 RNU4-57P-201ENST00000515980 135 ntBASIC1.4□□□□□ -2.19
SIX4Q9UIU6 SNORD116-25-201ENST00000516517 92 ntBASIC1.4□□□□□ -2.19
SIX4Q9UIU6 RNU6-922P-201ENST00000516753 99 ntBASIC1.4□□□□□ -2.19
SIX4Q9UIU6 AC019176.1-201ENST00000518519 225 ntBASIC1.4□□□□□ -2.19
SIX4Q9UIU6 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC1.4□□□□□ -2.19
SIX4Q9UIU6 RNU6-818P-201ENST00000364837 108 ntBASIC1.39□□□□□ -2.19
SIX4Q9UIU6 Y_RNA.337-201ENST00000365312 102 ntBASIC1.39□□□□□ -2.19
SIX4Q9UIU6 Y_RNA.464-201ENST00000384282 110 ntBASIC1.39□□□□□ -2.19
SIX4Q9UIU6 MIR653-201ENST00000385279 96 ntBASIC1.39□□□□□ -2.19
SIX4Q9UIU6 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC1.39□□□□□ -2.19
SIX4Q9UIU6 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC1.39□□□□□ -2.19
SIX4Q9UIU6 AF228730.3-201ENST00000436691 102 ntBASIC1.39□□□□□ -2.19
SIX4Q9UIU6 RNU6-830P-201ENST00000516353 107 ntBASIC1.39□□□□□ -2.19
SIX4Q9UIU6 SNORA18.7-201ENST00000516910 131 ntBASIC1.39□□□□□ -2.19
SIX4Q9UIU6 RNU7-181P-201ENST00000517234 74 ntBASIC1.39□□□□□ -2.19
SIX4Q9UIU6 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC1.39□□□□□ -2.19
SIX4Q9UIU6 MIR3129-201ENST00000581095 76 ntBASIC1.39□□□□□ -2.19
SIX4Q9UIU6 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC1.39□□□□□ -2.19
SIX4Q9UIU6 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC1.39□□□□□ -2.19
SIX4Q9UIU6 AL161722.3-201ENST00000605789 2983 ntBASIC1.38□□□□□ -2.19
SIX4Q9UIU6 Y_RNA.170-201ENST00000363746 110 ntBASIC1.38□□□□□ -2.19
SIX4Q9UIU6 SNORD115-28-201ENST00000363931 81 ntBASIC1.38□□□□□ -2.19
SIX4Q9UIU6 SNORD1A-201ENST00000364968 72 ntBASIC1.38□□□□□ -2.19
SIX4Q9UIU6 SNORA2.2-201ENST00000365473 135 ntBASIC1.38□□□□□ -2.19
SIX4Q9UIU6 SNORD41-201ENST00000386967 70 ntBASIC1.38□□□□□ -2.19
SIX4Q9UIU6 RNU6-955P-201ENST00000410497 104 ntBASIC1.38□□□□□ -2.19
SIX4Q9UIU6 RNU6-938P-201ENST00000411285 103 ntBASIC1.38□□□□□ -2.19
SIX4Q9UIU6 RPS29P23-201ENST00000458635 123 ntBASIC1.38□□□□□ -2.19
SIX4Q9UIU6 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC1.38□□□□□ -2.19
SIX4Q9UIU6 RNU6-1212P-201ENST00000517023 104 ntBASIC1.38□□□□□ -2.19
SIX4Q9UIU6 AC090049.2-201ENST00000550377 109 ntBASIC1.38□□□□□ -2.19
SIX4Q9UIU6 AL365205.2-201ENST00000594586 68 ntBASIC1.38□□□□□ -2.19
SIX4Q9UIU6 AL359821.1-201ENST00000605519 182 ntBASIC1.38□□□□□ -2.19
SIX4Q9UIU6 AL353770.2-201ENST00000620024 78 ntBASIC1.38□□□□□ -2.19
SIX4Q9UIU6 MIR376A2-201ENST00000636782 80 ntBASIC1.38□□□□□ -2.19
SIX4Q9UIU6 Y_RNA.37-201ENST00000362606 108 ntBASIC1.37□□□□□ -2.19
SIX4Q9UIU6 RNU6-1082P-201ENST00000364574 107 ntBASIC1.37□□□□□ -2.19
SIX4Q9UIU6 Y_RNA.338-201ENST00000365320 114 ntBASIC1.37□□□□□ -2.19
SIX4Q9UIU6 RNU6-597P-201ENST00000365620 102 ntBASIC1.37□□□□□ -2.19
SIX4Q9UIU6 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.37□□□□□ -2.19
SIX4Q9UIU6 SNORD28B-201ENST00000390993 75 ntBASIC1.37□□□□□ -2.19
SIX4Q9UIU6 Y_RNA.580-201ENST00000391004 95 ntBASIC1.37□□□□□ -2.19
SIX4Q9UIU6 SNORD77.3-201ENST00000391113 65 ntBASIC1.37□□□□□ -2.19
SIX4Q9UIU6 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC1.37□□□□□ -2.19
SIX4Q9UIU6 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC1.37□□□□□ -2.19
SIX4Q9UIU6 SNORD123-201ENST00000459473 70 ntBASIC1.37□□□□□ -2.19
SIX4Q9UIU6 SNORD36C-201ENST00000516733 66 ntBASIC1.37□□□□□ -2.19
SIX4Q9UIU6 DNAJC19P2-201ENST00000593340 302 ntBASIC1.37□□□□□ -2.19
SIX4Q9UIU6 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.37□□□□□ -2.19
SIX4Q9UIU6 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC1.37□□□□□ -2.19
SIX4Q9UIU6 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC1.37□□□□□ -2.19
SIX4Q9UIU6 RNY1P11-201ENST00000363759 113 ntBASIC1.36□□□□□ -2.19
SIX4Q9UIU6 RNU6-151P-201ENST00000364158 107 ntBASIC1.36□□□□□ -2.19
SIX4Q9UIU6 RNU4-11P-201ENST00000365287 132 ntBASIC1.36□□□□□ -2.19
SIX4Q9UIU6 RNU6-449P-201ENST00000383914 107 ntBASIC1.36□□□□□ -2.19
SIX4Q9UIU6 U8.17-201ENST00000391292 132 ntBASIC1.36□□□□□ -2.19
SIX4Q9UIU6 AC245517.4-201ENST00000448601 281 ntBASIC1.36□□□□□ -2.19
SIX4Q9UIU6 AC079140.2-201ENST00000506193 142 ntBASIC1.36□□□□□ -2.19
SIX4Q9UIU6 SNORA74.3-201ENST00000517108 154 ntBASIC1.36□□□□□ -2.19
SIX4Q9UIU6 AL157834.3-201ENST00000615543 103 ntBASIC1.36□□□□□ -2.19
SIX4Q9UIU6 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC1.35□□□□□ -2.19
SIX4Q9UIU6 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC1.35□□□□□ -2.19
SIX4Q9UIU6 SNORA25.7-201ENST00000364375 127 ntBASIC1.35□□□□□ -2.19
SIX4Q9UIU6 RNU6-1062P-201ENST00000383908 107 ntBASIC1.35□□□□□ -2.19
SIX4Q9UIU6 Y_RNA.542-201ENST00000384641 111 ntBASIC1.35□□□□□ -2.19
SIX4Q9UIU6 RNU1-78P-201ENST00000391248 165 ntBASIC1.35□□□□□ -2.19
SIX4Q9UIU6 AL451046.2-201ENST00000403074 277 ntBASIC1.35□□□□□ -2.19
SIX4Q9UIU6 AC027119.1-201ENST00000440877 241 ntBASIC1.35□□□□□ -2.19
SIX4Q9UIU6 RNU6-322P-201ENST00000516010 103 ntBASIC1.35□□□□□ -2.19
SIX4Q9UIU6 MIR3937-201ENST00000580135 106 ntBASIC1.35□□□□□ -2.19
SIX4Q9UIU6 MIR7974-201ENST00000615835 79 ntBASIC1.35□□□□□ -2.19
SIX4Q9UIU6 AC134878.1-201ENST00000619901 243 ntBASIC1.35□□□□□ -2.19
SIX4Q9UIU6 Y_RNA.778-201ENST00000620203 90 ntBASIC1.35□□□□□ -2.19
SIX4Q9UIU6 MIR6844-201ENST00000637122 62 ntBASIC1.35□□□□□ -2.19
SIX4Q9UIU6 Y_RNA.494-201ENST00000384432 111 ntBASIC1.34□□□□□ -2.19
SIX4Q9UIU6 MIR570-201ENST00000384917 97 ntBASIC1.34□□□□□ -2.19
SIX4Q9UIU6 SNORD37.2-201ENST00000391075 66 ntBASIC1.34□□□□□ -2.19
SIX4Q9UIU6 SNORA75.5-201ENST00000391291 81 ntBASIC1.34□□□□□ -2.19
SIX4Q9UIU6 RNU6-588P-201ENST00000410281 105 ntBASIC1.34□□□□□ -2.19
SIX4Q9UIU6 RNU6-321P-201ENST00000410912 106 ntBASIC1.34□□□□□ -2.19
SIX4Q9UIU6 RPS27P16-201ENST00000425758 201 ntBASIC1.34□□□□□ -2.19
SIX4Q9UIU6 AC108729.3-201ENST00000513484 108 ntBASIC1.34□□□□□ -2.19
SIX4Q9UIU6 SNORD111.1-201ENST00000516421 86 ntBASIC1.34□□□□□ -2.19
SIX4Q9UIU6 AP003484.1-201ENST00000530974 250 ntBASIC1.34□□□□□ -2.19
SIX4Q9UIU6 MIR548AR-201ENST00000582191 57 ntBASIC1.34□□□□□ -2.19
SIX4Q9UIU6 AL513534.2-201ENST00000603836 250 ntBASIC1.34□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 109.3 ms