Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 MIR605-201ENST00000385078 83 ntBASIC3.14□□□□□ -1.91
LIMD1Q9UGP4 RNU4ATAC16P-201ENST00000408512 126 ntBASIC3.14□□□□□ -1.91
LIMD1Q9UGP4 SNORA7.5-201ENST00000410672 110 ntBASIC3.14□□□□□ -1.91
LIMD1Q9UGP4 RNA5SP217-201ENST00000515959 91 ntBASIC3.14□□□□□ -1.91
LIMD1Q9UGP4 AC096720.1-201ENST00000604441 183 ntBASIC3.14□□□□□ -1.91
LIMD1Q9UGP4 FAR1-204ENST00000532502 5820 ntTSL 2 BASIC3.14□□□□□ -1.91
LIMD1Q9UGP4 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
LIMD1Q9UGP4 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC3.13□□□□□ -1.91
LIMD1Q9UGP4 RNU6-616P-201ENST00000384353 107 ntBASIC3.13□□□□□ -1.91
LIMD1Q9UGP4 MIR526A1-201ENST00000384897 85 ntBASIC3.13□□□□□ -1.91
LIMD1Q9UGP4 RPL32P35-201ENST00000415214 394 ntBASIC3.13□□□□□ -1.91
LIMD1Q9UGP4 AC099513.1-201ENST00000490423 301 ntBASIC3.13□□□□□ -1.91
LIMD1Q9UGP4 RNU1-143P-201ENST00000516296 146 ntBASIC3.13□□□□□ -1.91
LIMD1Q9UGP4 SCARNA20.6-201ENST00000517251 106 ntBASIC3.13□□□□□ -1.91
LIMD1Q9UGP4 AC245166.1-201ENST00000521012 253 ntBASIC3.13□□□□□ -1.91
LIMD1Q9UGP4 MIR4658-201ENST00000584344 65 ntBASIC3.13□□□□□ -1.91
LIMD1Q9UGP4 U1.23-201ENST00000610293 146 ntBASIC3.13□□□□□ -1.91
LIMD1Q9UGP4 RNU1-68P-201ENST00000615382 146 ntBASIC3.13□□□□□ -1.91
LIMD1Q9UGP4 U1.39-201ENST00000621562 146 ntBASIC3.13□□□□□ -1.91
LIMD1Q9UGP4 NEDD4-208ENST00000508342 7235 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
LIMD1Q9UGP4 AP000648.3-201ENST00000623539 4507 ntBASIC3.13□□□□□ -1.91
LIMD1Q9UGP4 Y_RNA.354-201ENST00000365448 111 ntBASIC3.12□□□□□ -1.91
LIMD1Q9UGP4 SNORD28B-201ENST00000390993 75 ntBASIC3.12□□□□□ -1.91
LIMD1Q9UGP4 RNU6-679P-201ENST00000391003 106 ntBASIC3.12□□□□□ -1.91
LIMD1Q9UGP4 MRPL35P3-201ENST00000421557 364 ntBASIC3.12□□□□□ -1.91
LIMD1Q9UGP4 RPL23AP6-201ENST00000446637 472 ntBASIC3.12□□□□□ -1.91
LIMD1Q9UGP4 RNU7-61P-201ENST00000515897 61 ntBASIC3.12□□□□□ -1.91
LIMD1Q9UGP4 RNU6ATAC17P-201ENST00000516074 71 ntBASIC3.12□□□□□ -1.91
LIMD1Q9UGP4 AP003327.1-201ENST00000529684 127 ntBASIC3.12□□□□□ -1.91
LIMD1Q9UGP4 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC3.12□□□□□ -1.91
LIMD1Q9UGP4 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC3.12□□□□□ -1.91
LIMD1Q9UGP4 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC3.11□□□□□ -1.91
LIMD1Q9UGP4 RNU7-43P-201ENST00000516554 64 ntBASIC3.11□□□□□ -1.91
LIMD1Q9UGP4 SNORA74.3-201ENST00000517108 154 ntBASIC3.11□□□□□ -1.91
LIMD1Q9UGP4 FAS-AS1.2-201ENST00000620386 170 ntBASIC3.11□□□□□ -1.91
LIMD1Q9UGP4 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC3.11□□□□□ -1.91
LIMD1Q9UGP4 SNORA1.1-201ENST00000364671 133 ntBASIC3.1□□□□□ -1.91
LIMD1Q9UGP4 RNU6-1201P-201ENST00000384227 107 ntBASIC3.1□□□□□ -1.91
LIMD1Q9UGP4 RNU6-913P-201ENST00000390913 95 ntBASIC3.1□□□□□ -1.91
LIMD1Q9UGP4 RNA5SP492-201ENST00000411330 114 ntBASIC3.1□□□□□ -1.91
LIMD1Q9UGP4 AC087499.2-201ENST00000432861 149 ntBASIC3.1□□□□□ -1.91
LIMD1Q9UGP4 RNA5SP57-201ENST00000459463 123 ntBASIC3.1□□□□□ -1.91
LIMD1Q9UGP4 RNU6-521P-201ENST00000516663 105 ntBASIC3.1□□□□□ -1.91
LIMD1Q9UGP4 FAM106DP-201ENST00000586416 501 ntBASIC3.1□□□□□ -1.91
LIMD1Q9UGP4 AC007218.2-201ENST00000636913 179 ntTSL 5 BASIC3.1□□□□□ -1.91
LIMD1Q9UGP4 GS1-279B7.1-204ENST00000641809 378 ntBASIC3.1□□□□□ -1.91
LIMD1Q9UGP4 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC3.1□□□□□ -1.91
LIMD1Q9UGP4 CPD-202ENST00000543464 4007 ntTSL 2 BASIC3.1□□□□□ -1.91
LIMD1Q9UGP4 ZMYM1-201ENST00000359858 4175 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
LIMD1Q9UGP4 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC3.09□□□□□ -1.91
LIMD1Q9UGP4 LEPR-202ENST00000349533 8227 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
LIMD1Q9UGP4 OSTN-201ENST00000339051 402 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
LIMD1Q9UGP4 Y_RNA.290-201ENST00000364879 114 ntBASIC3.09□□□□□ -1.91
LIMD1Q9UGP4 MIR196B-201ENST00000384852 84 ntBASIC3.09□□□□□ -1.91
LIMD1Q9UGP4 RNU6-360P-201ENST00000390944 104 ntBASIC3.09□□□□□ -1.91
LIMD1Q9UGP4 RNU6-795P-201ENST00000516323 103 ntBASIC3.09□□□□□ -1.91
LIMD1Q9UGP4 MIR4439-201ENST00000583746 80 ntBASIC3.09□□□□□ -1.91
LIMD1Q9UGP4 AC012531.4-201ENST00000616509 177 ntBASIC3.09□□□□□ -1.91
LIMD1Q9UGP4 AL512310.12-203ENST00000640543 90 ntBASIC3.09□□□□□ -1.91
LIMD1Q9UGP4 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
LIMD1Q9UGP4 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
LIMD1Q9UGP4 FRS2-201ENST00000397997 6550 ntAPPRIS P1 TSL 5 BASIC3.09□□□□□ -1.91
LIMD1Q9UGP4 AC093010.3-201ENST00000570269 15214 ntBASIC3.09□□□□□ -1.92
LIMD1Q9UGP4 RNU6-1123P-201ENST00000362347 106 ntBASIC3.08□□□□□ -1.92
LIMD1Q9UGP4 RNU6-1313P-201ENST00000362622 102 ntBASIC3.08□□□□□ -1.92
LIMD1Q9UGP4 RNU6-60P-201ENST00000364792 103 ntBASIC3.08□□□□□ -1.92
LIMD1Q9UGP4 RNA5SP173-201ENST00000364857 136 ntBASIC3.08□□□□□ -1.92
LIMD1Q9UGP4 RNU6-851P-201ENST00000384565 107 ntBASIC3.08□□□□□ -1.92
LIMD1Q9UGP4 RNU6-644P-201ENST00000391155 98 ntBASIC3.08□□□□□ -1.92
LIMD1Q9UGP4 AL023284.1-201ENST00000403956 276 ntBASIC3.08□□□□□ -1.92
LIMD1Q9UGP4 AL353813.1-201ENST00000440700 253 ntBASIC3.08□□□□□ -1.92
LIMD1Q9UGP4 Y_RNA.659-201ENST00000515994 113 ntBASIC3.08□□□□□ -1.92
LIMD1Q9UGP4 Y_RNA.705-201ENST00000516862 110 ntBASIC3.08□□□□□ -1.92
LIMD1Q9UGP4 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC3.08□□□□□ -1.92
LIMD1Q9UGP4 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC3.08□□□□□ -1.92
LIMD1Q9UGP4 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC3.07□□□□□ -1.92
LIMD1Q9UGP4 PRKACB-218ENST00000610703 4240 ntTSL 2 BASIC3.07□□□□□ -1.92
LIMD1Q9UGP4 GYPA-201ENST00000324022 751 ntAPPRIS ALT2 TSL 1 (best) BASIC3.07□□□□□ -1.92
LIMD1Q9UGP4 Y_RNA.95-201ENST00000363079 95 ntBASIC3.07□□□□□ -1.92
LIMD1Q9UGP4 RNU6-1190P-201ENST00000410811 104 ntBASIC3.07□□□□□ -1.92
LIMD1Q9UGP4 SNORA31.26-201ENST00000517250 137 ntBASIC3.07□□□□□ -1.92
LIMD1Q9UGP4 MIR4529-201ENST00000578110 78 ntBASIC3.07□□□□□ -1.92
LIMD1Q9UGP4 U7.3-201ENST00000616123 62 ntBASIC3.07□□□□□ -1.92
LIMD1Q9UGP4 KIAA1107-202ENST00000636278 4065 ntAPPRIS P1 TSL 5 BASIC3.07□□□□□ -1.92
LIMD1Q9UGP4 RNU1-138P-201ENST00000384093 164 ntBASIC3.06□□□□□ -1.92
LIMD1Q9UGP4 RNU6-1152P-201ENST00000384576 107 ntBASIC3.06□□□□□ -1.92
LIMD1Q9UGP4 SNORD109B-201ENST00000458961 67 ntBASIC3.06□□□□□ -1.92
LIMD1Q9UGP4 SNORD109A-201ENST00000459128 67 ntBASIC3.06□□□□□ -1.92
LIMD1Q9UGP4 AC079600.2-201ENST00000550076 130 ntBASIC3.06□□□□□ -1.92
LIMD1Q9UGP4 MIR8055-201ENST00000610739 97 ntBASIC3.06□□□□□ -1.92
LIMD1Q9UGP4 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC3.06□□□□□ -1.92
LIMD1Q9UGP4 SNORA32-201ENST00000384072 121 ntBASIC3.05□□□□□ -1.92
LIMD1Q9UGP4 RNU6-972P-201ENST00000391208 107 ntBASIC3.05□□□□□ -1.92
LIMD1Q9UGP4 RNU6ATAC41P-201ENST00000408600 126 ntBASIC3.05□□□□□ -1.92
LIMD1Q9UGP4 UQCRHP3-201ENST00000451503 251 ntBASIC3.05□□□□□ -1.92
LIMD1Q9UGP4 RN7SL75P-201ENST00000461926 281 ntBASIC3.05□□□□□ -1.92
LIMD1Q9UGP4 AC005336.3-201ENST00000623833 2679 ntBASIC3.04□□□□□ -1.92
LIMD1Q9UGP4 SNORD115-35-201ENST00000365122 82 ntBASIC3.04□□□□□ -1.92
LIMD1Q9UGP4 SNORA46-201ENST00000384762 135 ntBASIC3.04□□□□□ -1.92
LIMD1Q9UGP4 AL451046.2-201ENST00000403074 277 ntBASIC3.04□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 101.6 ms