Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 SNORD115-10-201ENST00000365073 81 ntBASIC1□□□□□ -2.25
CHMP1AQ9HD42 SNORD115-43-201ENST00000365503 82 ntBASIC1□□□□□ -2.25
CHMP1AQ9HD42 SNORD115-36-201ENST00000365629 82 ntBASIC1□□□□□ -2.25
CHMP1AQ9HD42 RNU2-70P-201ENST00000410718 179 ntBASIC1□□□□□ -2.25
CHMP1AQ9HD42 AC023051.1-201ENST00000414098 876 ntTSL 5 BASIC1□□□□□ -2.25
CHMP1AQ9HD42 AF228730.3-201ENST00000436691 102 ntBASIC1□□□□□ -2.25
CHMP1AQ9HD42 SNORA18.4-201ENST00000516440 124 ntBASIC1□□□□□ -2.25
CHMP1AQ9HD42 SNORD36C-201ENST00000516733 66 ntBASIC1□□□□□ -2.25
CHMP1AQ9HD42 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC1□□□□□ -2.25
CHMP1AQ9HD42 AC023827.1-201ENST00000569247 97 ntBASIC1□□□□□ -2.25
CHMP1AQ9HD42 MIR4421-201ENST00000578133 69 ntBASIC1□□□□□ -2.25
CHMP1AQ9HD42 AC131055.1-201ENST00000584626 316 ntBASIC1□□□□□ -2.25
CHMP1AQ9HD42 MIR4781-201ENST00000585250 76 ntBASIC1□□□□□ -2.25
CHMP1AQ9HD42 SNORD115-40-201ENST00000606510 82 ntBASIC1□□□□□ -2.25
CHMP1AQ9HD42 Y_RNA.199-201ENST00000364014 102 ntBASIC0.99□□□□□ -2.25
CHMP1AQ9HD42 RNU6-702P-201ENST00000364982 107 ntBASIC0.99□□□□□ -2.25
CHMP1AQ9HD42 Y_RNA.452-201ENST00000384202 108 ntBASIC0.99□□□□□ -2.25
CHMP1AQ9HD42 SNORA26-201ENST00000391286 122 ntBASIC0.99□□□□□ -2.25
CHMP1AQ9HD42 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC0.99□□□□□ -2.25
CHMP1AQ9HD42 RPS29P28-201ENST00000446439 141 ntBASIC0.99□□□□□ -2.25
CHMP1AQ9HD42 AP003484.1-201ENST00000530974 250 ntBASIC0.99□□□□□ -2.25
CHMP1AQ9HD42 Y_RNA.23-201ENST00000362496 106 ntBASIC0.98□□□□□ -2.25
CHMP1AQ9HD42 Y_RNA.60-201ENST00000362831 98 ntBASIC0.98□□□□□ -2.25
CHMP1AQ9HD42 Y_RNA.308-201ENST00000365043 101 ntBASIC0.98□□□□□ -2.25
CHMP1AQ9HD42 Y_RNA.447-201ENST00000384184 113 ntBASIC0.98□□□□□ -2.25
CHMP1AQ9HD42 Y_RNA.478-201ENST00000384358 107 ntBASIC0.98□□□□□ -2.25
CHMP1AQ9HD42 SNORA40.5-201ENST00000391061 128 ntBASIC0.98□□□□□ -2.25
CHMP1AQ9HD42 Y_RNA.626-201ENST00000411288 95 ntBASIC0.98□□□□□ -2.25
CHMP1AQ9HD42 AC107297.1-201ENST00000459991 176 ntBASIC0.98□□□□□ -2.25
CHMP1AQ9HD42 AC036111.3-201ENST00000526389 112 ntBASIC0.98□□□□□ -2.25
CHMP1AQ9HD42 MIR3149-201ENST00000584629 83 ntBASIC0.98□□□□□ -2.25
CHMP1AQ9HD42 MIR3660-201ENST00000584845 100 ntBASIC0.98□□□□□ -2.25
CHMP1AQ9HD42 AP000942.4-201ENST00000604811 241 ntBASIC0.98□□□□□ -2.25
CHMP1AQ9HD42 AL162730.1-201ENST00000605734 292 ntBASIC0.98□□□□□ -2.25
CHMP1AQ9HD42 AL157834.3-201ENST00000615543 103 ntBASIC0.98□□□□□ -2.25
CHMP1AQ9HD42 AC134878.1-201ENST00000619901 243 ntBASIC0.98□□□□□ -2.25
CHMP1AQ9HD42 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC0.98□□□□□ -2.25
CHMP1AQ9HD42 AL391516.1-201ENST00000554380 2449 ntBASIC0.97□□□□□ -2.25
CHMP1AQ9HD42 SNORA7.1-201ENST00000363750 139 ntBASIC0.97□□□□□ -2.25
CHMP1AQ9HD42 Y_RNA.307-201ENST00000365022 117 ntBASIC0.97□□□□□ -2.25
CHMP1AQ9HD42 SNORD114-24-201ENST00000365029 72 ntBASIC0.97□□□□□ -2.25
CHMP1AQ9HD42 RNU6-463P-201ENST00000384340 107 ntBASIC0.97□□□□□ -2.25
CHMP1AQ9HD42 MIR200A-201ENST00000384875 90 ntBASIC0.97□□□□□ -2.25
CHMP1AQ9HD42 RNU6-1023P-201ENST00000516137 106 ntBASIC0.97□□□□□ -2.25
CHMP1AQ9HD42 RNU6-197P-201ENST00000516680 100 ntBASIC0.97□□□□□ -2.25
CHMP1AQ9HD42 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC0.97□□□□□ -2.25
CHMP1AQ9HD42 7SK.10-201ENST00000621414 298 ntBASIC0.97□□□□□ -2.25
CHMP1AQ9HD42 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC0.97□□□□□ -2.25
CHMP1AQ9HD42 Y_RNA.144-201ENST00000363521 113 ntBASIC0.96□□□□□ -2.26
CHMP1AQ9HD42 RNU6-103P-201ENST00000363686 107 ntBASIC0.96□□□□□ -2.26
CHMP1AQ9HD42 RNU6-1187P-201ENST00000364771 110 ntBASIC0.96□□□□□ -2.26
CHMP1AQ9HD42 RNU6-728P-201ENST00000365375 104 ntBASIC0.96□□□□□ -2.26
CHMP1AQ9HD42 SNORA1-201ENST00000384107 130 ntBASIC0.96□□□□□ -2.26
CHMP1AQ9HD42 SNORA27-201ENST00000384323 126 ntBASIC0.96□□□□□ -2.26
CHMP1AQ9HD42 RNU6-493P-201ENST00000391321 108 ntBASIC0.96□□□□□ -2.26
CHMP1AQ9HD42 RNA5SP95-201ENST00000410319 137 ntBASIC0.96□□□□□ -2.26
CHMP1AQ9HD42 RNU6-613P-201ENST00000410412 108 ntBASIC0.96□□□□□ -2.26
CHMP1AQ9HD42 AL591806.2-201ENST00000433122 173 ntBASIC0.96□□□□□ -2.26
CHMP1AQ9HD42 RNU7-67P-201ENST00000459003 62 ntBASIC0.96□□□□□ -2.26
CHMP1AQ9HD42 RNU6-111P-201ENST00000517179 105 ntBASIC0.96□□□□□ -2.26
CHMP1AQ9HD42 MIR4308-201ENST00000580634 81 ntBASIC0.96□□□□□ -2.26
CHMP1AQ9HD42 AL020996.3-201ENST00000606617 222 ntBASIC0.96□□□□□ -2.26
CHMP1AQ9HD42 AC106800.4-201ENST00000614905 153 ntBASIC0.96□□□□□ -2.26
CHMP1AQ9HD42 RNU6-923P-201ENST00000364753 107 ntBASIC0.95□□□□□ -2.26
CHMP1AQ9HD42 RNU6-913P-201ENST00000390913 95 ntBASIC0.95□□□□□ -2.26
CHMP1AQ9HD42 RNU4-43P-201ENST00000410628 137 ntBASIC0.95□□□□□ -2.26
CHMP1AQ9HD42 AC090844.1-201ENST00000422019 156 ntBASIC0.95□□□□□ -2.26
CHMP1AQ9HD42 snoU13.16-201ENST00000459350 104 ntBASIC0.95□□□□□ -2.26
CHMP1AQ9HD42 RPL39P28-201ENST00000465655 155 ntBASIC0.95□□□□□ -2.26
CHMP1AQ9HD42 RN7SL429P-201ENST00000479090 223 ntBASIC0.95□□□□□ -2.26
CHMP1AQ9HD42 RN7SL489P-201ENST00000486185 223 ntBASIC0.95□□□□□ -2.26
CHMP1AQ9HD42 RN7SL327P-201ENST00000488659 223 ntBASIC0.95□□□□□ -2.26
CHMP1AQ9HD42 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC0.95□□□□□ -2.26
CHMP1AQ9HD42 AC005840.1-201ENST00000498412 377 ntBASIC0.95□□□□□ -2.26
CHMP1AQ9HD42 MIR2115-201ENST00000516657 100 ntBASIC0.95□□□□□ -2.26
CHMP1AQ9HD42 RNU6-958P-201ENST00000516995 106 ntBASIC0.95□□□□□ -2.26
CHMP1AQ9HD42 MIR4744-201ENST00000581563 82 ntBASIC0.95□□□□□ -2.26
CHMP1AQ9HD42 RN7SL853P-201ENST00000617250 223 ntBASIC0.95□□□□□ -2.26
CHMP1AQ9HD42 AL353770.2-201ENST00000620024 78 ntBASIC0.95□□□□□ -2.26
CHMP1AQ9HD42 MIR376A2-201ENST00000636782 80 ntBASIC0.95□□□□□ -2.26
CHMP1AQ9HD42 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC0.95□□□□□ -2.26
CHMP1AQ9HD42 RNU6-396P-201ENST00000365369 105 ntBASIC0.94□□□□□ -2.26
CHMP1AQ9HD42 RNU6-125P-201ENST00000384505 107 ntBASIC0.94□□□□□ -2.26
CHMP1AQ9HD42 SNORD77.3-201ENST00000391113 65 ntBASIC0.94□□□□□ -2.26
CHMP1AQ9HD42 MIR942-201ENST00000401111 86 ntBASIC0.94□□□□□ -2.26
CHMP1AQ9HD42 RPS29P24-201ENST00000486345 171 ntBASIC0.94□□□□□ -2.26
CHMP1AQ9HD42 DEFB131B-201ENST00000530210 213 ntAPPRIS P1 TSL 1 (best) BASIC0.94□□□□□ -2.26
CHMP1AQ9HD42 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC0.94□□□□□ -2.26
CHMP1AQ9HD42 RNU2-4P-201ENST00000606190 192 ntBASIC0.94□□□□□ -2.26
CHMP1AQ9HD42 RNU6-94P-201ENST00000607728 107 ntBASIC0.94□□□□□ -2.26
CHMP1AQ9HD42 AC108706.1-201ENST00000611053 297 ntBASIC0.94□□□□□ -2.26
CHMP1AQ9HD42 AC012676.2-201ENST00000619258 186 ntBASIC0.94□□□□□ -2.26
CHMP1AQ9HD42 Y_RNA.7-201ENST00000362352 102 ntBASIC0.93□□□□□ -2.26
CHMP1AQ9HD42 RNY1-201ENST00000364228 113 ntBASIC0.93□□□□□ -2.26
CHMP1AQ9HD42 Y_RNA.238-201ENST00000364441 102 ntBASIC0.93□□□□□ -2.26
CHMP1AQ9HD42 SNORA20.1-201ENST00000364790 130 ntBASIC0.93□□□□□ -2.26
CHMP1AQ9HD42 Y_RNA.410-201ENST00000383992 113 ntBASIC0.93□□□□□ -2.26
CHMP1AQ9HD42 Y_RNA.440-201ENST00000384120 114 ntBASIC0.93□□□□□ -2.26
CHMP1AQ9HD42 RNU6-578P-201ENST00000390980 103 ntBASIC0.93□□□□□ -2.26
CHMP1AQ9HD42 RNU4-62P-201ENST00000410125 130 ntBASIC0.93□□□□□ -2.26
Retrieved 100 of 98,524 protein–RNA pairs in 124.3 ms