Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 Y_RNA.466-201ENST00000384294 113 ntBASIC1.02□□□□□ -2.25
CCDC3Q9BQI4 Y_RNA.486-201ENST00000384398 107 ntBASIC1.02□□□□□ -2.25
CCDC3Q9BQI4 RNU6-381P-201ENST00000391259 108 ntBASIC1.02□□□□□ -2.25
CCDC3Q9BQI4 MIR548O-201ENST00000408583 114 ntBASIC1.02□□□□□ -2.25
CCDC3Q9BQI4 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC1.02□□□□□ -2.25
CCDC3Q9BQI4 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC1.02□□□□□ -2.25
CCDC3Q9BQI4 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC1.02□□□□□ -2.25
CCDC3Q9BQI4 RPS29P28-201ENST00000446439 141 ntBASIC1.02□□□□□ -2.25
CCDC3Q9BQI4 RNU7-21P-201ENST00000459430 62 ntBASIC1.02□□□□□ -2.25
CCDC3Q9BQI4 RNU7-41P-201ENST00000515917 61 ntBASIC1.02□□□□□ -2.25
CCDC3Q9BQI4 RNU6-365P-201ENST00000517113 106 ntBASIC1.02□□□□□ -2.25
CCDC3Q9BQI4 RNU6-1223P-201ENST00000517124 104 ntBASIC1.02□□□□□ -2.25
CCDC3Q9BQI4 TTC28-AS1_2.1-201ENST00000611117 157 ntBASIC1.02□□□□□ -2.25
CCDC3Q9BQI4 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC1.01□□□□□ -2.25
CCDC3Q9BQI4 Y_RNA.76-201ENST00000362931 109 ntBASIC1.01□□□□□ -2.25
CCDC3Q9BQI4 RNU6-888P-201ENST00000363010 101 ntBASIC1.01□□□□□ -2.25
CCDC3Q9BQI4 RNU6-103P-201ENST00000363686 107 ntBASIC1.01□□□□□ -2.25
CCDC3Q9BQI4 Y_RNA.292-201ENST00000364904 97 ntBASIC1.01□□□□□ -2.25
CCDC3Q9BQI4 RNY4P28-201ENST00000365281 93 ntBASIC1.01□□□□□ -2.25
CCDC3Q9BQI4 Y_RNA.350-201ENST00000365409 98 ntBASIC1.01□□□□□ -2.25
CCDC3Q9BQI4 Y_RNA.452-201ENST00000384202 108 ntBASIC1.01□□□□□ -2.25
CCDC3Q9BQI4 MIR548J-201ENST00000408833 112 ntBASIC1.01□□□□□ -2.25
CCDC3Q9BQI4 RNU6-847P-201ENST00000411115 108 ntBASIC1.01□□□□□ -2.25
CCDC3Q9BQI4 AL392103.1-201ENST00000447000 198 ntBASIC1.01□□□□□ -2.25
CCDC3Q9BQI4 RNU6-1299P-201ENST00000516316 100 ntBASIC1.01□□□□□ -2.25
CCDC3Q9BQI4 RNU7-40P-201ENST00000516397 64 ntBASIC1.01□□□□□ -2.25
CCDC3Q9BQI4 RNU6-504P-201ENST00000516568 104 ntBASIC1.01□□□□□ -2.25
CCDC3Q9BQI4 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC1.01□□□□□ -2.25
CCDC3Q9BQI4 HSPE1P19-201ENST00000603327 295 ntBASIC1.01□□□□□ -2.25
CCDC3Q9BQI4 SNORD114-21-201ENST00000606412 72 ntBASIC1.01□□□□□ -2.25
CCDC3Q9BQI4 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC1.01□□□□□ -2.25
CCDC3Q9BQI4 SNORD115-34-201ENST00000362441 82 ntBASIC1□□□□□ -2.25
CCDC3Q9BQI4 SNORD115-12-201ENST00000362583 82 ntBASIC1□□□□□ -2.25
CCDC3Q9BQI4 SNORD115-29-201ENST00000362834 82 ntBASIC1□□□□□ -2.25
CCDC3Q9BQI4 SNORD115-9-201ENST00000362912 82 ntBASIC1□□□□□ -2.25
CCDC3Q9BQI4 SNORD115-21-201ENST00000362963 81 ntBASIC1□□□□□ -2.25
CCDC3Q9BQI4 SNORD115-14-201ENST00000363090 81 ntBASIC1□□□□□ -2.25
CCDC3Q9BQI4 SNORD115-13-201ENST00000363358 82 ntBASIC1□□□□□ -2.25
CCDC3Q9BQI4 SNORD115-41-201ENST00000363608 82 ntBASIC1□□□□□ -2.25
CCDC3Q9BQI4 SNORD115-11-201ENST00000363616 82 ntBASIC1□□□□□ -2.25
CCDC3Q9BQI4 SNORD115-5-201ENST00000363633 82 ntBASIC1□□□□□ -2.25
CCDC3Q9BQI4 SNORD115-39-201ENST00000363694 82 ntBASIC1□□□□□ -2.25
CCDC3Q9BQI4 SNORD115-4-201ENST00000363810 82 ntBASIC1□□□□□ -2.25
CCDC3Q9BQI4 SNORD115-16-201ENST00000363887 82 ntBASIC1□□□□□ -2.25
CCDC3Q9BQI4 SNORD115-6-201ENST00000363942 82 ntBASIC1□□□□□ -2.25
CCDC3Q9BQI4 SNORD115-42-201ENST00000364273 82 ntBASIC1□□□□□ -2.25
CCDC3Q9BQI4 snoU2_19.4-201ENST00000364329 80 ntBASIC1□□□□□ -2.25
CCDC3Q9BQI4 Y_RNA.277-201ENST00000364754 102 ntBASIC1□□□□□ -2.25
CCDC3Q9BQI4 SNORD115-15-201ENST00000364809 81 ntBASIC1□□□□□ -2.25
CCDC3Q9BQI4 SNORD115-1-201ENST00000364961 82 ntBASIC1□□□□□ -2.25
CCDC3Q9BQI4 SNORD115-26-201ENST00000365067 82 ntBASIC1□□□□□ -2.25
CCDC3Q9BQI4 SNORD115-10-201ENST00000365073 81 ntBASIC1□□□□□ -2.25
CCDC3Q9BQI4 SNORD115-43-201ENST00000365503 82 ntBASIC1□□□□□ -2.25
CCDC3Q9BQI4 SNORD115-36-201ENST00000365629 82 ntBASIC1□□□□□ -2.25
CCDC3Q9BQI4 RNU6-484P-201ENST00000384016 107 ntBASIC1□□□□□ -2.25
CCDC3Q9BQI4 SNORA24-201ENST00000384096 131 ntBASIC1□□□□□ -2.25
CCDC3Q9BQI4 RNU6-463P-201ENST00000384340 107 ntBASIC1□□□□□ -2.25
CCDC3Q9BQI4 Y_RNA.572-201ENST00000384757 98 ntBASIC1□□□□□ -2.25
CCDC3Q9BQI4 SNORD28B-201ENST00000390993 75 ntBASIC1□□□□□ -2.25
CCDC3Q9BQI4 RNU6ATAC20P-201ENST00000408436 127 ntBASIC1□□□□□ -2.25
CCDC3Q9BQI4 RNU4-43P-201ENST00000410628 137 ntBASIC1□□□□□ -2.25
CCDC3Q9BQI4 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC1□□□□□ -2.25
CCDC3Q9BQI4 AC002429.1-201ENST00000437672 148 ntBASIC1□□□□□ -2.25
CCDC3Q9BQI4 AL118496.2-201ENST00000448300 230 ntBASIC1□□□□□ -2.25
CCDC3Q9BQI4 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC1□□□□□ -2.25
CCDC3Q9BQI4 SCARNA8-201ENST00000515924 131 ntBASIC1□□□□□ -2.25
CCDC3Q9BQI4 Y_RNA.666-201ENST00000516187 112 ntBASIC1□□□□□ -2.25
CCDC3Q9BQI4 RNU7-25P-201ENST00000516544 62 ntBASIC1□□□□□ -2.25
CCDC3Q9BQI4 MIR4503-201ENST00000582187 83 ntBASIC1□□□□□ -2.25
CCDC3Q9BQI4 SNORD115-40-201ENST00000606510 82 ntBASIC1□□□□□ -2.25
CCDC3Q9BQI4 MIR6515-201ENST00000619843 57 ntBASIC1□□□□□ -2.25
CCDC3Q9BQI4 AC015726.2-201ENST00000620112 122 ntBASIC1□□□□□ -2.25
CCDC3Q9BQI4 AL391516.1-201ENST00000554380 2449 ntBASIC0.99□□□□□ -2.25
CCDC3Q9BQI4 Y_RNA.66-201ENST00000362862 102 ntBASIC0.99□□□□□ -2.25
CCDC3Q9BQI4 RNU6-702P-201ENST00000364982 107 ntBASIC0.99□□□□□ -2.25
CCDC3Q9BQI4 RNU4-17P-201ENST00000365598 141 ntBASIC0.99□□□□□ -2.25
CCDC3Q9BQI4 RNU6-196P-201ENST00000384315 107 ntBASIC0.99□□□□□ -2.25
CCDC3Q9BQI4 AC063976.4-201ENST00000421971 163 ntBASIC0.99□□□□□ -2.25
CCDC3Q9BQI4 SNRPGP8-201ENST00000454064 226 ntBASIC0.99□□□□□ -2.25
CCDC3Q9BQI4 RNU7-90P-201ENST00000459216 62 ntBASIC0.99□□□□□ -2.25
CCDC3Q9BQI4 AC007751.1-201ENST00000529260 376 ntBASIC0.99□□□□□ -2.25
CCDC3Q9BQI4 AL162730.1-201ENST00000605734 292 ntBASIC0.99□□□□□ -2.25
CCDC3Q9BQI4 SEPT14P17-201ENST00000617978 177 ntBASIC0.99□□□□□ -2.25
CCDC3Q9BQI4 MIR4251-201ENST00000635819 61 ntBASIC0.99□□□□□ -2.25
CCDC3Q9BQI4 Y_RNA.121-201ENST00000363309 113 ntBASIC0.98□□□□□ -2.25
CCDC3Q9BQI4 SNORD115-28-201ENST00000363931 81 ntBASIC0.98□□□□□ -2.25
CCDC3Q9BQI4 Y_RNA.354-201ENST00000365448 111 ntBASIC0.98□□□□□ -2.25
CCDC3Q9BQI4 Y_RNA.432-201ENST00000384087 111 ntBASIC0.98□□□□□ -2.25
CCDC3Q9BQI4 MIR200A-201ENST00000384875 90 ntBASIC0.98□□□□□ -2.25
CCDC3Q9BQI4 MIR548A2-201ENST00000384956 97 ntBASIC0.98□□□□□ -2.25
CCDC3Q9BQI4 MIR518F-201ENST00000384973 87 ntBASIC0.98□□□□□ -2.25
CCDC3Q9BQI4 MIR1185-1-201ENST00000408598 86 ntBASIC0.98□□□□□ -2.25
CCDC3Q9BQI4 AL353742.1-201ENST00000453455 224 ntTSL 3 BASIC0.98□□□□□ -2.25
CCDC3Q9BQI4 AC107297.1-201ENST00000459991 176 ntBASIC0.98□□□□□ -2.25
CCDC3Q9BQI4 MTND1P19-201ENST00000511780 315 ntBASIC0.98□□□□□ -2.25
CCDC3Q9BQI4 RNU6-1023P-201ENST00000516137 106 ntBASIC0.98□□□□□ -2.25
CCDC3Q9BQI4 RNU4-71P-201ENST00000516258 113 ntBASIC0.98□□□□□ -2.25
CCDC3Q9BQI4 AC109810.1-201ENST00000534066 224 ntBASIC0.98□□□□□ -2.25
CCDC3Q9BQI4 AC004817.2-201ENST00000561794 651 ntBASIC0.98□□□□□ -2.25
CCDC3Q9BQI4 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC0.98□□□□□ -2.25
Retrieved 100 of 98,524 protein–RNA pairs in 210.3 ms