Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 RNU4-57P-201ENST00000515980 135 ntBASIC1.28□□□□□ -2.2
COL28A1Q2UY09 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC1.28□□□□□ -2.2
COL28A1Q2UY09 MIR4764-201ENST00000580680 88 ntBASIC1.28□□□□□ -2.2
COL28A1Q2UY09 AL096861.1-201ENST00000610899 123 ntBASIC1.28□□□□□ -2.2
COL28A1Q2UY09 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC1.28□□□□□ -2.2
COL28A1Q2UY09 Y_RNA.65-201ENST00000362846 100 ntBASIC1.27□□□□□ -2.21
COL28A1Q2UY09 SNORA1.2-201ENST00000365189 134 ntBASIC1.27□□□□□ -2.21
COL28A1Q2UY09 RNU6-484P-201ENST00000384016 107 ntBASIC1.27□□□□□ -2.21
COL28A1Q2UY09 Y_RNA.486-201ENST00000384398 107 ntBASIC1.27□□□□□ -2.21
COL28A1Q2UY09 Y_RNA.489-201ENST00000384410 101 ntBASIC1.27□□□□□ -2.21
COL28A1Q2UY09 MIR520C-201ENST00000385005 87 ntBASIC1.27□□□□□ -2.21
COL28A1Q2UY09 AC245047.7-201ENST00000440265 293 ntBASIC1.27□□□□□ -2.21
COL28A1Q2UY09 AL133373.1-201ENST00000497098 94 ntBASIC1.27□□□□□ -2.21
COL28A1Q2UY09 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC1.27□□□□□ -2.21
COL28A1Q2UY09 SNORA31.4-201ENST00000516049 129 ntBASIC1.27□□□□□ -2.21
COL28A1Q2UY09 RNU6-1299P-201ENST00000516316 100 ntBASIC1.27□□□□□ -2.21
COL28A1Q2UY09 RNU6-111P-201ENST00000517179 105 ntBASIC1.27□□□□□ -2.21
COL28A1Q2UY09 MIR222-201ENST00000384992 110 ntBASIC1.26□□□□□ -2.21
COL28A1Q2UY09 MT-TT-201ENST00000387460 66 ntBASIC1.26□□□□□ -2.21
COL28A1Q2UY09 U8.17-201ENST00000391292 132 ntBASIC1.26□□□□□ -2.21
COL28A1Q2UY09 AL606845.1-201ENST00000404881 255 ntBASIC1.26□□□□□ -2.21
COL28A1Q2UY09 MIR548O-201ENST00000408583 114 ntBASIC1.26□□□□□ -2.21
COL28A1Q2UY09 Y_RNA.626-201ENST00000411288 95 ntBASIC1.26□□□□□ -2.21
COL28A1Q2UY09 RNU7-25P-201ENST00000516544 62 ntBASIC1.26□□□□□ -2.21
COL28A1Q2UY09 RNU6-365P-201ENST00000517113 106 ntBASIC1.26□□□□□ -2.21
COL28A1Q2UY09 MIR3192-201ENST00000584920 77 ntBASIC1.26□□□□□ -2.21
COL28A1Q2UY09 AC015726.2-201ENST00000620112 122 ntBASIC1.26□□□□□ -2.21
COL28A1Q2UY09 MT-ATP8-201ENST00000361851 207 ntAPPRIS P1 BASIC1.25□□□□□ -2.21
COL28A1Q2UY09 RNU6-888P-201ENST00000363010 101 ntBASIC1.25□□□□□ -2.21
COL28A1Q2UY09 Y_RNA.121-201ENST00000363309 113 ntBASIC1.25□□□□□ -2.21
COL28A1Q2UY09 RNA5SP48-201ENST00000363969 126 ntBASIC1.25□□□□□ -2.21
COL28A1Q2UY09 Y_RNA.370-201ENST00000365589 108 ntBASIC1.25□□□□□ -2.21
COL28A1Q2UY09 Y_RNA.432-201ENST00000384087 111 ntBASIC1.25□□□□□ -2.21
COL28A1Q2UY09 Y_RNA.433-201ENST00000384089 102 ntBASIC1.25□□□□□ -2.21
COL28A1Q2UY09 Y_RNA.547-201ENST00000384654 119 ntBASIC1.25□□□□□ -2.21
COL28A1Q2UY09 MIR150-201ENST00000385048 84 ntBASIC1.25□□□□□ -2.21
COL28A1Q2UY09 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC1.25□□□□□ -2.21
COL28A1Q2UY09 SNORA31.2-201ENST00000516019 134 ntBASIC1.25□□□□□ -2.21
COL28A1Q2UY09 Y_RNA.681-201ENST00000516445 113 ntBASIC1.25□□□□□ -2.21
COL28A1Q2UY09 RNU6-504P-201ENST00000516568 104 ntBASIC1.25□□□□□ -2.21
COL28A1Q2UY09 RNU6-453P-201ENST00000516819 85 ntBASIC1.25□□□□□ -2.21
COL28A1Q2UY09 DEFB131B-201ENST00000530210 213 ntAPPRIS P1 TSL 1 (best) BASIC1.25□□□□□ -2.21
COL28A1Q2UY09 MIR548AR-201ENST00000582191 57 ntBASIC1.25□□□□□ -2.21
COL28A1Q2UY09 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC1.25□□□□□ -2.21
COL28A1Q2UY09 Y_RNA.66-201ENST00000362862 102 ntBASIC1.24□□□□□ -2.21
COL28A1Q2UY09 RNU4-43P-201ENST00000410628 137 ntBASIC1.24□□□□□ -2.21
COL28A1Q2UY09 AC087499.4-201ENST00000448505 178 ntBASIC1.24□□□□□ -2.21
COL28A1Q2UY09 SNRPGP8-201ENST00000454064 226 ntBASIC1.24□□□□□ -2.21
COL28A1Q2UY09 AC004223.1-201ENST00000479840 271 ntBASIC1.24□□□□□ -2.21
COL28A1Q2UY09 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC1.24□□□□□ -2.21
COL28A1Q2UY09 Y_RNA.666-201ENST00000516187 112 ntBASIC1.24□□□□□ -2.21
COL28A1Q2UY09 RNU6-947P-201ENST00000516264 106 ntBASIC1.24□□□□□ -2.21
COL28A1Q2UY09 MIR5000-201ENST00000577717 103 ntBASIC1.24□□□□□ -2.21
COL28A1Q2UY09 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC1.23□□□□□ -2.21
COL28A1Q2UY09 Y_RNA.7-201ENST00000362352 102 ntBASIC1.23□□□□□ -2.21
COL28A1Q2UY09 RNA5SP327-201ENST00000362494 101 ntBASIC1.23□□□□□ -2.21
COL28A1Q2UY09 RNA5SP457-201ENST00000363657 124 ntBASIC1.23□□□□□ -2.21
COL28A1Q2UY09 Y_RNA.634-201ENST00000364811 113 ntBASIC1.23□□□□□ -2.21
COL28A1Q2UY09 Y_RNA.537-201ENST00000384626 109 ntBASIC1.23□□□□□ -2.21
COL28A1Q2UY09 RNU6-1067P-201ENST00000384752 107 ntBASIC1.23□□□□□ -2.21
COL28A1Q2UY09 SNORD12-201ENST00000391002 90 ntBASIC1.23□□□□□ -2.21
COL28A1Q2UY09 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC1.23□□□□□ -2.21
COL28A1Q2UY09 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC1.23□□□□□ -2.21
COL28A1Q2UY09 AC048334.1-201ENST00000477975 159 ntBASIC1.23□□□□□ -2.21
COL28A1Q2UY09 AC103879.1-201ENST00000503093 255 ntTSL 2 BASIC1.23□□□□□ -2.21
COL28A1Q2UY09 RNU2-13P-201ENST00000515909 113 ntBASIC1.23□□□□□ -2.21
COL28A1Q2UY09 RNU7-41P-201ENST00000515917 61 ntBASIC1.23□□□□□ -2.21
COL28A1Q2UY09 RNU6-197P-201ENST00000516680 100 ntBASIC1.23□□□□□ -2.21
COL28A1Q2UY09 AP003716.2-201ENST00000528260 108 ntBASIC1.23□□□□□ -2.21
COL28A1Q2UY09 MIR4744-201ENST00000581563 82 ntBASIC1.23□□□□□ -2.21
COL28A1Q2UY09 AC009779.6-201ENST00000603972 165 ntBASIC1.23□□□□□ -2.21
COL28A1Q2UY09 PRELID3BP2-201ENST00000605362 201 ntBASIC1.23□□□□□ -2.21
COL28A1Q2UY09 AC008133.2-201ENST00000624540 351 ntBASIC1.23□□□□□ -2.21
COL28A1Q2UY09 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC1.22□□□□□ -2.21
COL28A1Q2UY09 SNORD45.3-201ENST00000363836 72 ntBASIC1.22□□□□□ -2.21
COL28A1Q2UY09 SNORD115-28-201ENST00000363931 81 ntBASIC1.22□□□□□ -2.21
COL28A1Q2UY09 Y_RNA.188-201ENST00000363952 111 ntBASIC1.22□□□□□ -2.21
COL28A1Q2UY09 RNU6-728P-201ENST00000365375 104 ntBASIC1.22□□□□□ -2.21
COL28A1Q2UY09 MIR193B-201ENST00000384907 83 ntBASIC1.22□□□□□ -2.21
COL28A1Q2UY09 MIR548A2-201ENST00000384956 97 ntBASIC1.22□□□□□ -2.21
COL28A1Q2UY09 MIR518F-201ENST00000384973 87 ntBASIC1.22□□□□□ -2.21
COL28A1Q2UY09 SNORD28B-201ENST00000390993 75 ntBASIC1.22□□□□□ -2.21
COL28A1Q2UY09 SNORA40.6-201ENST00000391153 128 ntBASIC1.22□□□□□ -2.21
COL28A1Q2UY09 RNU2-70P-201ENST00000410718 179 ntBASIC1.22□□□□□ -2.21
COL28A1Q2UY09 snoU13.25-201ENST00000458945 104 ntBASIC1.22□□□□□ -2.21
COL28A1Q2UY09 RNU6-113P-201ENST00000516653 101 ntBASIC1.22□□□□□ -2.21
COL28A1Q2UY09 AC007751.1-201ENST00000529260 376 ntBASIC1.22□□□□□ -2.21
COL28A1Q2UY09 MIR3660-201ENST00000584845 100 ntBASIC1.22□□□□□ -2.21
COL28A1Q2UY09 AL022345.2-201ENST00000606307 135 ntBASIC1.22□□□□□ -2.21
COL28A1Q2UY09 MIR26B-201ENST00000362251 77 ntBASIC1.21□□□□□ -2.22
COL28A1Q2UY09 Y_RNA.199-201ENST00000364014 102 ntBASIC1.21□□□□□ -2.22
COL28A1Q2UY09 Y_RNA.200-201ENST00000364018 102 ntBASIC1.21□□□□□ -2.22
COL28A1Q2UY09 Y_RNA.308-201ENST00000365043 101 ntBASIC1.21□□□□□ -2.22
COL28A1Q2UY09 Y_RNA.435-201ENST00000384095 112 ntBASIC1.21□□□□□ -2.22
COL28A1Q2UY09 SNORD61-201ENST00000384252 73 ntBASIC1.21□□□□□ -2.22
COL28A1Q2UY09 SNORA25-201ENST00000384384 134 ntBASIC1.21□□□□□ -2.22
COL28A1Q2UY09 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC1.21□□□□□ -2.22
COL28A1Q2UY09 RNU7-181P-201ENST00000517234 74 ntBASIC1.21□□□□□ -2.22
COL28A1Q2UY09 MIR1273G-201ENST00000577677 100 ntBASIC1.21□□□□□ -2.22
COL28A1Q2UY09 AC027335.2-201ENST00000624030 375 ntBASIC1.21□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 166.3 ms