Protein–RNA interactions for Protein: P50479

PDLIM4, PDZ and LIM domain protein 4, humanhuman

Predictions only

Length 330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM4P50479 RNU6-1081P-201ENST00000384537 107 ntBASIC1.54□□□□□ -2.16
PDLIM4P50479 MIR660-201ENST00000385235 97 ntBASIC1.54□□□□□ -2.16
PDLIM4P50479 AC015922.2-201ENST00000435593 184 ntBASIC1.54□□□□□ -2.16
PDLIM4P50479 RNU4-57P-201ENST00000515980 135 ntBASIC1.54□□□□□ -2.16
PDLIM4P50479 RNU6-62P-201ENST00000516526 102 ntBASIC1.54□□□□□ -2.16
PDLIM4P50479 RNU7-25P-201ENST00000516544 62 ntBASIC1.54□□□□□ -2.16
PDLIM4P50479 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC1.54□□□□□ -2.16
PDLIM4P50479 MIR3121-201ENST00000579680 77 ntBASIC1.54□□□□□ -2.16
PDLIM4P50479 AL773524.1-201ENST00000614065 229 ntBASIC1.54□□□□□ -2.16
PDLIM4P50479 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC1.54□□□□□ -2.16
PDLIM4P50479 RNU6-1123P-201ENST00000362347 106 ntBASIC1.53□□□□□ -2.16
PDLIM4P50479 Y_RNA.37-201ENST00000362606 108 ntBASIC1.53□□□□□ -2.16
PDLIM4P50479 SNORA20-201ENST00000384662 132 ntBASIC1.53□□□□□ -2.16
PDLIM4P50479 MIR452-201ENST00000385020 85 ntBASIC1.53□□□□□ -2.16
PDLIM4P50479 RNU6-1168P-201ENST00000390831 104 ntBASIC1.53□□□□□ -2.16
PDLIM4P50479 RNU6-938P-201ENST00000411285 103 ntBASIC1.53□□□□□ -2.16
PDLIM4P50479 AL161935.2-201ENST00000414627 60 ntBASIC1.53□□□□□ -2.16
PDLIM4P50479 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC1.53□□□□□ -2.16
PDLIM4P50479 MTATP6P21-201ENST00000440681 189 ntBASIC1.53□□□□□ -2.16
PDLIM4P50479 AC008267.6-201ENST00000441664 139 ntBASIC1.53□□□□□ -2.16
PDLIM4P50479 Y_RNA.692-201ENST00000516627 105 ntBASIC1.53□□□□□ -2.16
PDLIM4P50479 RNU6-1116P-201ENST00000517269 99 ntBASIC1.53□□□□□ -2.16
PDLIM4P50479 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC1.53□□□□□ -2.16
PDLIM4P50479 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC1.53□□□□□ -2.16
PDLIM4P50479 MIR502-201ENST00000606349 86 ntBASIC1.53□□□□□ -2.16
PDLIM4P50479 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC1.52□□□□□ -2.17
PDLIM4P50479 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC1.52□□□□□ -2.17
PDLIM4P50479 U8.1-201ENST00000362843 134 ntBASIC1.52□□□□□ -2.17
PDLIM4P50479 Y_RNA.218-201ENST00000364218 104 ntBASIC1.52□□□□□ -2.17
PDLIM4P50479 SNORD18B-201ENST00000365659 72 ntBASIC1.52□□□□□ -2.17
PDLIM4P50479 SNORD116-14-201ENST00000383894 92 ntBASIC1.52□□□□□ -2.17
PDLIM4P50479 SNORD116-17-201ENST00000383929 92 ntBASIC1.52□□□□□ -2.17
PDLIM4P50479 RNU6-1189P-201ENST00000383958 107 ntBASIC1.52□□□□□ -2.17
PDLIM4P50479 SNORD116-15-201ENST00000384445 92 ntBASIC1.52□□□□□ -2.17
PDLIM4P50479 SNORD116-19-201ENST00000384729 92 ntBASIC1.52□□□□□ -2.17
PDLIM4P50479 MIR9-3-201ENST00000385084 90 ntBASIC1.52□□□□□ -2.17
PDLIM4P50479 RNU2-51P-201ENST00000410708 197 ntBASIC1.52□□□□□ -2.17
PDLIM4P50479 ATP6V0E1P3-201ENST00000420036 246 ntBASIC1.52□□□□□ -2.17
PDLIM4P50479 AC244636.1-201ENST00000421152 228 ntBASIC1.52□□□□□ -2.17
PDLIM4P50479 RNU7-12P-201ENST00000516030 62 ntBASIC1.52□□□□□ -2.17
PDLIM4P50479 RNU6-113P-201ENST00000516653 101 ntBASIC1.52□□□□□ -2.17
PDLIM4P50479 RNU6-971P-201ENST00000516920 106 ntBASIC1.52□□□□□ -2.17
PDLIM4P50479 Y_RNA.757-201ENST00000578934 114 ntBASIC1.52□□□□□ -2.17
PDLIM4P50479 MIR548AI-201ENST00000579940 88 ntBASIC1.52□□□□□ -2.17
PDLIM4P50479 MIR3683-201ENST00000580847 82 ntBASIC1.52□□□□□ -2.17
PDLIM4P50479 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC1.52□□□□□ -2.17
PDLIM4P50479 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC1.51□□□□□ -2.17
PDLIM4P50479 RNU6-661P-201ENST00000362409 107 ntBASIC1.51□□□□□ -2.17
PDLIM4P50479 Y_RNA.71-201ENST00000362892 104 ntBASIC1.51□□□□□ -2.17
PDLIM4P50479 Y_RNA.127-201ENST00000363386 109 ntBASIC1.51□□□□□ -2.17
PDLIM4P50479 Y_RNA.563-201ENST00000384707 108 ntBASIC1.51□□□□□ -2.17
PDLIM4P50479 AL627390.1-201ENST00000396055 340 ntBASIC1.51□□□□□ -2.17
PDLIM4P50479 AC108729.3-201ENST00000513484 108 ntBASIC1.51□□□□□ -2.17
PDLIM4P50479 Y_RNA.686-201ENST00000516548 134 ntBASIC1.51□□□□□ -2.17
PDLIM4P50479 RNU6-250P-201ENST00000516958 103 ntBASIC1.51□□□□□ -2.17
PDLIM4P50479 IGHVIII-67-2-201ENST00000519849 88 ntBASIC1.51□□□□□ -2.17
PDLIM4P50479 AC024614.2-201ENST00000577584 372 ntBASIC1.51□□□□□ -2.17
PDLIM4P50479 hsa-mir-4536-1.1-201ENST00000636519 88 ntBASIC1.51□□□□□ -2.17
PDLIM4P50479 MIR376A2-201ENST00000636782 80 ntBASIC1.51□□□□□ -2.17
PDLIM4P50479 SNORA16.1-201ENST00000364597 132 ntBASIC1.5□□□□□ -2.17
PDLIM4P50479 Y_RNA.440-201ENST00000384120 114 ntBASIC1.5□□□□□ -2.17
PDLIM4P50479 SNORA40.5-201ENST00000391061 128 ntBASIC1.5□□□□□ -2.17
PDLIM4P50479 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC1.5□□□□□ -2.17
PDLIM4P50479 AC108667.1-201ENST00000428618 249 ntBASIC1.5□□□□□ -2.17
PDLIM4P50479 AL158147.1-201ENST00000443970 75 ntBASIC1.5□□□□□ -2.17
PDLIM4P50479 SNORD13-201ENST00000459299 104 ntBASIC1.5□□□□□ -2.17
PDLIM4P50479 RNU6-659P-201ENST00000516454 104 ntBASIC1.5□□□□□ -2.17
PDLIM4P50479 Y_RNA.690-201ENST00000516603 95 ntBASIC1.5□□□□□ -2.17
PDLIM4P50479 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC1.5□□□□□ -2.17
PDLIM4P50479 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC1.5□□□□□ -2.17
PDLIM4P50479 AC011603.4-201ENST00000611325 277 ntBASIC1.5□□□□□ -2.17
PDLIM4P50479 MIR8081-201ENST00000611533 95 ntBASIC1.5□□□□□ -2.17
PDLIM4P50479 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC1.5□□□□□ -2.17
PDLIM4P50479 MTND5P32-201ENST00000560711 1802 ntBASIC1.5□□□□□ -2.17
PDLIM4P50479 SNORD115-34-201ENST00000362441 82 ntBASIC1.49□□□□□ -2.17
PDLIM4P50479 SNORD115-12-201ENST00000362583 82 ntBASIC1.49□□□□□ -2.17
PDLIM4P50479 SNORD115-29-201ENST00000362834 82 ntBASIC1.49□□□□□ -2.17
PDLIM4P50479 SNORD115-9-201ENST00000362912 82 ntBASIC1.49□□□□□ -2.17
PDLIM4P50479 SNORD115-21-201ENST00000362963 81 ntBASIC1.49□□□□□ -2.17
PDLIM4P50479 SNORD115-14-201ENST00000363090 81 ntBASIC1.49□□□□□ -2.17
PDLIM4P50479 SNORD115-13-201ENST00000363358 82 ntBASIC1.49□□□□□ -2.17
PDLIM4P50479 SNORD115-41-201ENST00000363608 82 ntBASIC1.49□□□□□ -2.17
PDLIM4P50479 SNORD115-11-201ENST00000363616 82 ntBASIC1.49□□□□□ -2.17
PDLIM4P50479 SNORD115-5-201ENST00000363633 82 ntBASIC1.49□□□□□ -2.17
PDLIM4P50479 SNORD115-39-201ENST00000363694 82 ntBASIC1.49□□□□□ -2.17
PDLIM4P50479 SNORD115-4-201ENST00000363810 82 ntBASIC1.49□□□□□ -2.17
PDLIM4P50479 SNORD115-16-201ENST00000363887 82 ntBASIC1.49□□□□□ -2.17
PDLIM4P50479 SNORD115-6-201ENST00000363942 82 ntBASIC1.49□□□□□ -2.17
PDLIM4P50479 SNORD115-42-201ENST00000364273 82 ntBASIC1.49□□□□□ -2.17
PDLIM4P50479 RNA5SP205-201ENST00000364653 136 ntBASIC1.49□□□□□ -2.17
PDLIM4P50479 SNORD115-15-201ENST00000364809 81 ntBASIC1.49□□□□□ -2.17
PDLIM4P50479 SNORD115-1-201ENST00000364961 82 ntBASIC1.49□□□□□ -2.17
PDLIM4P50479 SNORD115-26-201ENST00000365067 82 ntBASIC1.49□□□□□ -2.17
PDLIM4P50479 SNORD115-10-201ENST00000365073 81 ntBASIC1.49□□□□□ -2.17
PDLIM4P50479 SNORD115-43-201ENST00000365503 82 ntBASIC1.49□□□□□ -2.17
PDLIM4P50479 SNORD115-36-201ENST00000365629 82 ntBASIC1.49□□□□□ -2.17
PDLIM4P50479 MIR136-201ENST00000385207 82 ntBASIC1.49□□□□□ -2.17
PDLIM4P50479 RPS26P48-201ENST00000491713 339 ntBASIC1.49□□□□□ -2.17
PDLIM4P50479 RN7SKP179-201ENST00000516126 217 ntBASIC1.49□□□□□ -2.17
PDLIM4P50479 RNU6-313P-201ENST00000516317 112 ntBASIC1.49□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 100.9 ms