Protein–RNA interactions for Protein: P49761

CLK3, Dual specificity protein kinase CLK3, humanhuman

Known RBP Predictions only

Length 638 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3P49761 RNU7-80P-201ENST00000459562 61 ntBASIC2.01□□□□□ -2.09
CLK3P49761 SNORA40.13-201ENST00000516379 120 ntBASIC2.01□□□□□ -2.09
CLK3P49761 SNORD36C-201ENST00000516733 66 ntBASIC2.01□□□□□ -2.09
CLK3P49761 AP003484.1-201ENST00000530974 250 ntBASIC2.01□□□□□ -2.09
CLK3P49761 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC2.01□□□□□ -2.09
CLK3P49761 MIR5009-201ENST00000578736 100 ntBASIC2.01□□□□□ -2.09
CLK3P49761 AC090616.3-202ENST00000583346 205 ntTSL 2 BASIC2.01□□□□□ -2.09
CLK3P49761 Y_RNA.265-201ENST00000364677 108 ntBASIC2□□□□□ -2.09
CLK3P49761 Y_RNA.454-201ENST00000384224 113 ntBASIC2□□□□□ -2.09
CLK3P49761 U8.17-201ENST00000391292 132 ntBASIC2□□□□□ -2.09
CLK3P49761 RNVU1-2-201ENST00000516326 135 ntBASIC2□□□□□ -2.09
CLK3P49761 SUMO2P16-201ENST00000519475 264 ntBASIC2□□□□□ -2.09
CLK3P49761 MIR1273D-201ENST00000577266 86 ntBASIC2□□□□□ -2.09
CLK3P49761 MIR4778-201ENST00000577635 80 ntBASIC2□□□□□ -2.09
CLK3P49761 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC1.99□□□□□ -2.09
CLK3P49761 RNA5SP276-201ENST00000362580 94 ntBASIC1.99□□□□□ -2.09
CLK3P49761 U8.6-201ENST00000364939 135 ntBASIC1.99□□□□□ -2.09
CLK3P49761 Y_RNA.351-201ENST00000365436 96 ntBASIC1.99□□□□□ -2.09
CLK3P49761 MT-TI-201ENST00000387365 69 ntBASIC1.99□□□□□ -2.09
CLK3P49761 AL627390.1-201ENST00000396055 340 ntBASIC1.99□□□□□ -2.09
CLK3P49761 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC1.99□□□□□ -2.09
CLK3P49761 AL606517.2-201ENST00000442855 241 ntBASIC1.99□□□□□ -2.09
CLK3P49761 RNA5SP233-201ENST00000459153 113 ntBASIC1.99□□□□□ -2.09
CLK3P49761 RNU7-164P-201ENST00000459221 62 ntBASIC1.99□□□□□ -2.09
CLK3P49761 AC025033.1-201ENST00000463883 194 ntBASIC1.99□□□□□ -2.09
CLK3P49761 RNU6-830P-201ENST00000516353 107 ntBASIC1.99□□□□□ -2.09
CLK3P49761 SCARNA16.3-201ENST00000516595 184 ntBASIC1.99□□□□□ -2.09
CLK3P49761 SNORA18.7-201ENST00000516910 131 ntBASIC1.99□□□□□ -2.09
CLK3P49761 AC068339.1-201ENST00000526965 141 ntBASIC1.99□□□□□ -2.09
CLK3P49761 MIR5094-201ENST00000578766 85 ntBASIC1.99□□□□□ -2.09
CLK3P49761 MIR3683-201ENST00000580847 82 ntBASIC1.99□□□□□ -2.09
CLK3P49761 AC069114.2-201ENST00000604699 304 ntBASIC1.99□□□□□ -2.09
CLK3P49761 DLEU2_5.2-201ENST00000610606 84 ntBASIC1.99□□□□□ -2.09
CLK3P49761 Y_RNA.78-201ENST00000362970 110 ntBASIC1.98□□□□□ -2.09
CLK3P49761 SNORA51.10-201ENST00000384418 136 ntBASIC1.98□□□□□ -2.09
CLK3P49761 RN7SKP192-201ENST00000411291 327 ntBASIC1.98□□□□□ -2.09
CLK3P49761 Z98742.3-201ENST00000418637 326 ntBASIC1.98□□□□□ -2.09
CLK3P49761 AL162400.2-201ENST00000427547 157 ntTSL 3 BASIC1.98□□□□□ -2.09
CLK3P49761 RNU6-970P-201ENST00000516312 107 ntBASIC1.98□□□□□ -2.09
CLK3P49761 RNU1-40P-201ENST00000516816 164 ntBASIC1.98□□□□□ -2.09
CLK3P49761 RNU1-97P-201ENST00000516872 164 ntBASIC1.98□□□□□ -2.09
CLK3P49761 HMSD-204ENST00000526932 162 ntTSL 3 BASIC1.98□□□□□ -2.09
CLK3P49761 MIR4287-201ENST00000579398 78 ntBASIC1.98□□□□□ -2.09
CLK3P49761 MIR4305-201ENST00000583252 102 ntBASIC1.98□□□□□ -2.09
CLK3P49761 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC1.98□□□□□ -2.09
CLK3P49761 AC015726.2-201ENST00000620112 122 ntBASIC1.98□□□□□ -2.09
CLK3P49761 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC1.97□□□□□ -2.09
CLK3P49761 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC1.97□□□□□ -2.09
CLK3P49761 SNORD73B-201ENST00000364394 72 ntBASIC1.97□□□□□ -2.09
CLK3P49761 RNU6-294P-201ENST00000364999 102 ntBASIC1.97□□□□□ -2.09
CLK3P49761 SNORD38C-201ENST00000384381 69 ntBASIC1.97□□□□□ -2.09
CLK3P49761 MIR548D2-201ENST00000384955 97 ntBASIC1.97□□□□□ -2.09
CLK3P49761 RNU6-440P-201ENST00000390882 105 ntBASIC1.97□□□□□ -2.09
CLK3P49761 RNU7-123P-201ENST00000515911 60 ntBASIC1.97□□□□□ -2.09
CLK3P49761 MIR3163-201ENST00000581592 73 ntBASIC1.97□□□□□ -2.09
CLK3P49761 SNORA28-201ENST00000606769 126 ntBASIC1.97□□□□□ -2.09
CLK3P49761 Y_RNA.818-201ENST00000618813 71 ntBASIC1.97□□□□□ -2.09
CLK3P49761 AC091932.4-201ENST00000623386 200 ntBASIC1.97□□□□□ -2.09
CLK3P49761 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC1.96□□□□□ -2.09
CLK3P49761 RNU6-1019P-201ENST00000364424 107 ntBASIC1.96□□□□□ -2.1
CLK3P49761 RNU6-1131P-201ENST00000364955 107 ntBASIC1.96□□□□□ -2.1
CLK3P49761 Y_RNA.344-201ENST00000365381 112 ntBASIC1.96□□□□□ -2.1
CLK3P49761 RNA5SP109-201ENST00000391010 116 ntBASIC1.96□□□□□ -2.1
CLK3P49761 RNU6ATAC37P-201ENST00000408328 131 ntBASIC1.96□□□□□ -2.1
CLK3P49761 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC1.96□□□□□ -2.1
CLK3P49761 AC114811.1-201ENST00000507207 168 ntBASIC1.96□□□□□ -2.1
CLK3P49761 RNU6-158P-201ENST00000517104 100 ntBASIC1.96□□□□□ -2.1
CLK3P49761 RNU6-844P-201ENST00000517175 102 ntBASIC1.96□□□□□ -2.1
CLK3P49761 AC084364.2-201ENST00000546924 395 ntBASIC1.96□□□□□ -2.1
CLK3P49761 SUB1P4-201ENST00000566062 339 ntBASIC1.96□□□□□ -2.1
CLK3P49761 AC012493.3-201ENST00000604494 112 ntBASIC1.96□□□□□ -2.1
CLK3P49761 MIR8054-201ENST00000620877 86 ntBASIC1.96□□□□□ -2.1
CLK3P49761 AC027279.3-201ENST00000625055 122 ntBASIC1.96□□□□□ -2.1
CLK3P49761 GS1-279B7.1-204ENST00000641809 378 ntBASIC1.96□□□□□ -2.1
CLK3P49761 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC1.96□□□□□ -2.1
CLK3P49761 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC1.96□□□□□ -2.1
CLK3P49761 AL442644.1-201ENST00000454390 3105 ntBASIC1.95□□□□□ -2.1
CLK3P49761 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC1.95□□□□□ -2.1
CLK3P49761 AL596211.1-201ENST00000569873 2277 ntBASIC1.95□□□□□ -2.1
CLK3P49761 Y_RNA.558-201ENST00000384685 113 ntBASIC1.95□□□□□ -2.1
CLK3P49761 RNU6-1104P-201ENST00000384723 104 ntBASIC1.95□□□□□ -2.1
CLK3P49761 MIR590-201ENST00000385008 97 ntBASIC1.95□□□□□ -2.1
CLK3P49761 STAG3L5P-204ENST00000443759 179 ntBASIC1.95□□□□□ -2.1
CLK3P49761 RNA5SP57-201ENST00000459463 123 ntBASIC1.95□□□□□ -2.1
CLK3P49761 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC1.95□□□□□ -2.1
CLK3P49761 MIR219B-201ENST00000637023 88 ntBASIC1.95□□□□□ -2.1
CLK3P49761 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC1.95□□□□□ -2.1
CLK3P49761 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC1.95□□□□□ -2.1
CLK3P49761 CEP57L1-216ENST00000521522 2259 ntTSL 5 BASIC1.94□□□□□ -2.1
CLK3P49761 MIRLET7C-201ENST00000362160 84 ntBASIC1.94□□□□□ -2.1
CLK3P49761 U8.2-201ENST00000363156 134 ntBASIC1.94□□□□□ -2.1
CLK3P49761 RNU6-49P-201ENST00000384256 107 ntBASIC1.94□□□□□ -2.1
CLK3P49761 RNU6-163P-201ENST00000384396 106 ntBASIC1.94□□□□□ -2.1
CLK3P49761 RNA5SP212-201ENST00000391223 107 ntBASIC1.94□□□□□ -2.1
CLK3P49761 AL035398.1-201ENST00000430869 322 ntBASIC1.94□□□□□ -2.1
CLK3P49761 RNU2-35P-201ENST00000516446 142 ntBASIC1.94□□□□□ -2.1
CLK3P49761 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC1.94□□□□□ -2.1
CLK3P49761 AC022523.2-201ENST00000561045 150 ntBASIC1.94□□□□□ -2.1
CLK3P49761 MIR3935-201ENST00000583472 104 ntBASIC1.94□□□□□ -2.1
CLK3P49761 MIR2052-201ENST00000636055 55 ntBASIC1.94□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 187.4 ms