Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 AC009878.1-201ENST00000621819 340 ntBASIC-1.81□□□□□ -2.7
CUX1P39880 SNORD18.1-201ENST00000363807 70 ntBASIC-1.81□□□□□ -2.7
CUX1P39880 SNORA69-201ENST00000383895 132 ntBASIC-1.81□□□□□ -2.7
CUX1P39880 RNU6-767P-201ENST00000384132 107 ntBASIC-1.81□□□□□ -2.7
CUX1P39880 RNU6-154P-201ENST00000384306 106 ntBASIC-1.81□□□□□ -2.7
CUX1P39880 RNU6-456P-201ENST00000384493 107 ntBASIC-1.81□□□□□ -2.7
CUX1P39880 RNU6-601P-201ENST00000384540 107 ntBASIC-1.81□□□□□ -2.7
CUX1P39880 RNU2-9P-201ENST00000410194 145 ntBASIC-1.81□□□□□ -2.7
CUX1P39880 RNU6-759P-201ENST00000516740 103 ntBASIC-1.81□□□□□ -2.7
CUX1P39880 AL137161.1-201ENST00000532231 390 ntBASIC-1.81□□□□□ -2.7
CUX1P39880 AC092807.2-201ENST00000609367 243 ntBASIC-1.81□□□□□ -2.7
CUX1P39880 RNU6-74P-201ENST00000384235 107 ntBASIC-1.82□□□□□ -2.7
CUX1P39880 RNU6-1145P-201ENST00000384246 107 ntBASIC-1.82□□□□□ -2.7
CUX1P39880 SNORA27-201ENST00000384323 126 ntBASIC-1.82□□□□□ -2.7
CUX1P39880 UPP2-IT1-201ENST00000439185 357 ntTSL 3 BASIC-1.82□□□□□ -2.7
CUX1P39880 MIR548AE1-201ENST00000583292 70 ntBASIC-1.82□□□□□ -2.7
CUX1P39880 Y_RNA.172-201ENST00000363765 102 ntBASIC-1.83□□□□□ -2.7
CUX1P39880 AL606845.1-201ENST00000404881 255 ntBASIC-1.83□□□□□ -2.7
CUX1P39880 AC063965.1-201ENST00000416679 499 ntTSL 3 BASIC-1.83□□□□□ -2.7
CUX1P39880 DLGAP5P1-201ENST00000430307 464 ntBASIC-1.83□□□□□ -2.7
CUX1P39880 RNU4ATAC8P-201ENST00000516196 109 ntBASIC-1.83□□□□□ -2.7
CUX1P39880 RNU6-412P-201ENST00000516434 106 ntBASIC-1.83□□□□□ -2.7
CUX1P39880 MIR4703-201ENST00000577728 79 ntBASIC-1.83□□□□□ -2.7
CUX1P39880 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC-1.83□□□□□ -2.7
CUX1P39880 AL391262.2-201ENST00000622466 494 ntBASIC-1.83□□□□□ -2.7
CUX1P39880 SNORA2.1-201ENST00000363089 137 ntBASIC-1.84□□□□□ -2.7
CUX1P39880 Y_RNA.225-201ENST00000364326 97 ntBASIC-1.84□□□□□ -2.7
CUX1P39880 Y_RNA.323-201ENST00000365157 109 ntBASIC-1.84□□□□□ -2.7
CUX1P39880 RNU6-1138P-201ENST00000365359 106 ntBASIC-1.84□□□□□ -2.7
CUX1P39880 RNU6-449P-201ENST00000383914 107 ntBASIC-1.84□□□□□ -2.7
CUX1P39880 AL603910.2-201ENST00000407268 136 ntBASIC-1.84□□□□□ -2.7
CUX1P39880 RNU2-51P-201ENST00000410708 197 ntBASIC-1.84□□□□□ -2.7
CUX1P39880 AC244090.1-201ENST00000441884 93 ntBASIC-1.84□□□□□ -2.7
CUX1P39880 MTND2P3-201ENST00000452458 470 ntBASIC-1.84□□□□□ -2.7
CUX1P39880 SNORA40.17-201ENST00000517256 115 ntBASIC-1.84□□□□□ -2.7
CUX1P39880 AC018714.1-201ENST00000605028 208 ntBASIC-1.84□□□□□ -2.7
CUX1P39880 AC091931.1-201ENST00000623488 728 ntBASIC-1.84□□□□□ -2.7
CUX1P39880 RNU6-1209P-201ENST00000363655 107 ntBASIC-1.85□□□□□ -2.71
CUX1P39880 RNU6-533P-201ENST00000384144 107 ntBASIC-1.85□□□□□ -2.71
CUX1P39880 RNU6-1310P-201ENST00000384153 107 ntBASIC-1.85□□□□□ -2.71
CUX1P39880 MIR626-201ENST00000385032 94 ntBASIC-1.85□□□□□ -2.71
CUX1P39880 RNA5SP86-201ENST00000390869 98 ntBASIC-1.85□□□□□ -2.71
CUX1P39880 AC093423.1-201ENST00000440817 142 ntBASIC-1.85□□□□□ -2.71
CUX1P39880 AC008243.1-201ENST00000504955 389 ntTSL 3 BASIC-1.85□□□□□ -2.71
CUX1P39880 AC093783.1-201ENST00000612976 329 ntBASIC-1.85□□□□□ -2.71
CUX1P39880 AL133173.2-201ENST00000614270 90 ntBASIC-1.85□□□□□ -2.71
CUX1P39880 MIR6818-201ENST00000621576 65 ntBASIC-1.85□□□□□ -2.71
CUX1P39880 MIR6717-201ENST00000622747 73 ntBASIC-1.85□□□□□ -2.71
CUX1P39880 AC091912.2-201ENST00000624798 167 ntBASIC-1.85□□□□□ -2.71
CUX1P39880 MIR3674-201ENST00000636576 68 ntBASIC-1.85□□□□□ -2.71
CUX1P39880 Y_RNA.214-201ENST00000364201 112 ntBASIC-1.86□□□□□ -2.71
CUX1P39880 Y_RNA.367-201ENST00000365544 101 ntBASIC-1.86□□□□□ -2.71
CUX1P39880 AC098614.3-201ENST00000438957 440 ntBASIC-1.86□□□□□ -2.71
CUX1P39880 MTND1P27-201ENST00000451117 902 ntBASIC-1.86□□□□□ -2.71
CUX1P39880 MTCO1P29-201ENST00000496868 288 ntBASIC-1.86□□□□□ -2.71
CUX1P39880 Y_RNA.672-201ENST00000516289 104 ntBASIC-1.86□□□□□ -2.71
CUX1P39880 RNU6-1012P-201ENST00000516606 109 ntBASIC-1.86□□□□□ -2.71
CUX1P39880 MIR548H5-201ENST00000580314 60 ntBASIC-1.86□□□□□ -2.71
CUX1P39880 PART1_1.1-201ENST00000611761 217 ntBASIC-1.86□□□□□ -2.71
CUX1P39880 AC027807.2-201ENST00000616099 408 ntBASIC-1.86□□□□□ -2.71
CUX1P39880 SNORD115-28-201ENST00000363931 81 ntBASIC-1.86□□□□□ -2.71
CUX1P39880 RNU6-1201P-201ENST00000384227 107 ntBASIC-1.86□□□□□ -2.71
CUX1P39880 RNU6-192P-201ENST00000391253 100 ntBASIC-1.86□□□□□ -2.71
CUX1P39880 Y_RNA.802-201ENST00000614892 130 ntBASIC-1.86□□□□□ -2.71
CUX1P39880 RNU6-704P-201ENST00000364162 103 ntBASIC-1.87□□□□□ -2.71
CUX1P39880 SNORD116.1-201ENST00000365628 92 ntBASIC-1.87□□□□□ -2.71
CUX1P39880 RNU6-476P-201ENST00000384726 107 ntBASIC-1.87□□□□□ -2.71
CUX1P39880 MIR1-2-201ENST00000384961 85 ntBASIC-1.87□□□□□ -2.71
CUX1P39880 SNORD72-201ENST00000390994 80 ntBASIC-1.87□□□□□ -2.71
CUX1P39880 RNU6-466P-201ENST00000391224 103 ntBASIC-1.87□□□□□ -2.71
CUX1P39880 RNY4-201ENST00000516507 96 ntBASIC-1.87□□□□□ -2.71
CUX1P39880 RNU5B-6P-201ENST00000516765 68 ntBASIC-1.87□□□□□ -2.71
CUX1P39880 MIR2681-201ENST00000581814 105 ntBASIC-1.87□□□□□ -2.71
CUX1P39880 AC022441.3-201ENST00000605737 136 ntBASIC-1.87□□□□□ -2.71
CUX1P39880 MIR6874-201ENST00000635894 71 ntBASIC-1.87□□□□□ -2.71
CUX1P39880 MIR335-201ENST00000362173 94 ntBASIC-1.88□□□□□ -2.71
CUX1P39880 RNU6-228P-201ENST00000362700 106 ntBASIC-1.88□□□□□ -2.71
CUX1P39880 RNU6-1323P-201ENST00000384025 107 ntBASIC-1.88□□□□□ -2.71
CUX1P39880 RNU6-933P-201ENST00000384424 107 ntBASIC-1.88□□□□□ -2.71
CUX1P39880 SNORD116-12-201ENST00000384468 92 ntBASIC-1.88□□□□□ -2.71
CUX1P39880 SNORA49-201ENST00000386157 136 ntBASIC-1.88□□□□□ -2.71
CUX1P39880 AP005120.1-201ENST00000579321 352 ntTSL 3 BASIC-1.88□□□□□ -2.71
CUX1P39880 AC011825.2-201ENST00000583138 553 ntTSL 4 BASIC-1.88□□□□□ -2.71
CUX1P39880 MIR5188-201ENST00000583467 113 ntBASIC-1.88□□□□□ -2.71
CUX1P39880 AC104010.1-201ENST00000616889 150 ntBASIC-1.88□□□□□ -2.71
CUX1P39880 U4.1-201ENST00000620349 87 ntBASIC-1.88□□□□□ -2.71
CUX1P39880 SNORD115-25-201ENST00000362619 82 ntBASIC-1.89□□□□□ -2.71
CUX1P39880 Y_RNA.472-201ENST00000384322 102 ntBASIC-1.89□□□□□ -2.71
CUX1P39880 SNORA26.6-201ENST00000391256 115 ntBASIC-1.89□□□□□ -2.71
CUX1P39880 RNU6-588P-201ENST00000410281 105 ntBASIC-1.89□□□□□ -2.71
CUX1P39880 RNU6-1190P-201ENST00000410811 104 ntBASIC-1.89□□□□□ -2.71
CUX1P39880 RNU4-61P-201ENST00000411243 107 ntBASIC-1.89□□□□□ -2.71
CUX1P39880 RNU7-175P-201ENST00000515915 61 ntBASIC-1.89□□□□□ -2.71
CUX1P39880 SNORD27.1-201ENST00000516319 72 ntBASIC-1.89□□□□□ -2.71
CUX1P39880 RNU7-25P-201ENST00000516544 62 ntBASIC-1.89□□□□□ -2.71
CUX1P39880 RNU7-116P-201ENST00000516940 62 ntBASIC-1.89□□□□□ -2.71
CUX1P39880 AC245884.10-201ENST00000597355 337 ntBASIC-1.89□□□□□ -2.71
CUX1P39880 RNU6-653P-201ENST00000363074 106 ntBASIC-1.9□□□□□ -2.71
CUX1P39880 RNY1P13-201ENST00000365030 105 ntBASIC-1.9□□□□□ -2.71
CUX1P39880 RNU6-484P-201ENST00000384016 107 ntBASIC-1.9□□□□□ -2.71
Retrieved 100 of 98,524 protein–RNA pairs in 108.3 ms