Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 RNU6-1292P-201ENST00000383856 107 ntBASIC1.51□□□□□ -2.17
HOXD3P31249 SNORA40-201ENST00000388090 126 ntBASIC1.51□□□□□ -2.17
HOXD3P31249 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC1.51□□□□□ -2.17
HOXD3P31249 SNORD28B-201ENST00000390993 75 ntBASIC1.51□□□□□ -2.17
HOXD3P31249 U8.17-201ENST00000391292 132 ntBASIC1.51□□□□□ -2.17
HOXD3P31249 RNU6-717P-201ENST00000459076 104 ntBASIC1.51□□□□□ -2.17
HOXD3P31249 RNU6-1211P-201ENST00000459179 105 ntBASIC1.51□□□□□ -2.17
HOXD3P31249 AC108729.3-201ENST00000513484 108 ntBASIC1.51□□□□□ -2.17
HOXD3P31249 SCARNA15-202ENST00000516881 127 ntBASIC1.51□□□□□ -2.17
HOXD3P31249 SNORA18.7-201ENST00000516910 131 ntBASIC1.51□□□□□ -2.17
HOXD3P31249 AP003484.1-201ENST00000530974 250 ntBASIC1.51□□□□□ -2.17
HOXD3P31249 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC1.51□□□□□ -2.17
HOXD3P31249 AC103810.8-201ENST00000607347 118 ntBASIC1.51□□□□□ -2.17
HOXD3P31249 AP000553.5-201ENST00000641933 54 ntBASIC1.51□□□□□ -2.17
HOXD3P31249 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC1.5□□□□□ -2.17
HOXD3P31249 RNA5SP259-201ENST00000365541 109 ntBASIC1.5□□□□□ -2.17
HOXD3P31249 RNU6-81P-201ENST00000365608 104 ntBASIC1.5□□□□□ -2.17
HOXD3P31249 RNU6-1189P-201ENST00000383958 107 ntBASIC1.5□□□□□ -2.17
HOXD3P31249 MIR570-201ENST00000384917 97 ntBASIC1.5□□□□□ -2.17
HOXD3P31249 MIR452-201ENST00000385020 85 ntBASIC1.5□□□□□ -2.17
HOXD3P31249 MIR136-201ENST00000385207 82 ntBASIC1.5□□□□□ -2.17
HOXD3P31249 RNA5SP247-201ENST00000411181 105 ntBASIC1.5□□□□□ -2.17
HOXD3P31249 AC003989.2-201ENST00000440224 169 ntBASIC1.5□□□□□ -2.17
HOXD3P31249 AC005908.1-201ENST00000468701 347 ntBASIC1.5□□□□□ -2.17
HOXD3P31249 RNU6-1149P-201ENST00000516810 97 ntBASIC1.5□□□□□ -2.17
HOXD3P31249 RNU6-1234P-201ENST00000516877 103 ntBASIC1.5□□□□□ -2.17
HOXD3P31249 RNA5SP364-201ENST00000516938 78 ntBASIC1.5□□□□□ -2.17
HOXD3P31249 AP001328.1-201ENST00000528550 176 ntBASIC1.5□□□□□ -2.17
HOXD3P31249 MIR5089-201ENST00000580047 84 ntBASIC1.5□□□□□ -2.17
HOXD3P31249 MIR548AR-201ENST00000582191 57 ntBASIC1.5□□□□□ -2.17
HOXD3P31249 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC1.5□□□□□ -2.17
HOXD3P31249 Y_RNA.4-201ENST00000362333 112 ntBASIC1.49□□□□□ -2.17
HOXD3P31249 RNU6-1123P-201ENST00000362347 106 ntBASIC1.49□□□□□ -2.17
HOXD3P31249 RNA5SP138-201ENST00000365098 114 ntBASIC1.49□□□□□ -2.17
HOXD3P31249 SNORA2.2-201ENST00000365473 135 ntBASIC1.49□□□□□ -2.17
HOXD3P31249 Y_RNA.410-201ENST00000383992 113 ntBASIC1.49□□□□□ -2.17
HOXD3P31249 RPL31P63-201ENST00000422565 375 ntBASIC1.49□□□□□ -2.17
HOXD3P31249 RNU5E-3P-201ENST00000515913 68 ntBASIC1.49□□□□□ -2.17
HOXD3P31249 RNU6-830P-201ENST00000516353 107 ntBASIC1.49□□□□□ -2.17
HOXD3P31249 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC1.49□□□□□ -2.17
HOXD3P31249 MIR5197-201ENST00000583721 112 ntBASIC1.49□□□□□ -2.17
HOXD3P31249 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC1.49□□□□□ -2.17
HOXD3P31249 AP001340.1-201ENST00000624405 217 ntBASIC1.49□□□□□ -2.17
HOXD3P31249 MIR342-201ENST00000362212 99 ntBASIC1.48□□□□□ -2.17
HOXD3P31249 RNU6-661P-201ENST00000362409 107 ntBASIC1.48□□□□□ -2.17
HOXD3P31249 Y_RNA.218-201ENST00000364218 104 ntBASIC1.48□□□□□ -2.17
HOXD3P31249 Y_RNA.241-201ENST00000364470 117 ntBASIC1.48□□□□□ -2.17
HOXD3P31249 Y_RNA.440-201ENST00000384120 114 ntBASIC1.48□□□□□ -2.17
HOXD3P31249 RNU6-959P-201ENST00000384671 107 ntBASIC1.48□□□□□ -2.17
HOXD3P31249 MIR513A1-201ENST00000385138 129 ntBASIC1.48□□□□□ -2.17
HOXD3P31249 MIR1267-201ENST00000408723 78 ntBASIC1.48□□□□□ -2.17
HOXD3P31249 RNA5SP338-201ENST00000410495 85 ntBASIC1.48□□□□□ -2.17
HOXD3P31249 AC108667.1-201ENST00000428618 249 ntBASIC1.48□□□□□ -2.17
HOXD3P31249 RPS26P48-201ENST00000491713 339 ntBASIC1.48□□□□□ -2.17
HOXD3P31249 RNA5SP236-201ENST00000516169 116 ntBASIC1.48□□□□□ -2.17
HOXD3P31249 Y_RNA.690-201ENST00000516603 95 ntBASIC1.48□□□□□ -2.17
HOXD3P31249 SNORA44.1-201ENST00000517031 108 ntBASIC1.48□□□□□ -2.17
HOXD3P31249 MIR3121-201ENST00000579680 77 ntBASIC1.48□□□□□ -2.17
HOXD3P31249 AC011603.4-201ENST00000611325 277 ntBASIC1.48□□□□□ -2.17
HOXD3P31249 MIR8074-201ENST00000615081 81 ntBASIC1.48□□□□□ -2.17
HOXD3P31249 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC1.48□□□□□ -2.17
HOXD3P31249 AL442644.1-201ENST00000454390 3105 ntBASIC1.47□□□□□ -2.17
HOXD3P31249 Y_RNA.120-201ENST00000363304 110 ntBASIC1.47□□□□□ -2.17
HOXD3P31249 Y_RNA.651-201ENST00000459380 103 ntBASIC1.47□□□□□ -2.17
HOXD3P31249 SNORD123-201ENST00000459473 70 ntBASIC1.47□□□□□ -2.17
HOXD3P31249 AC008834.1-201ENST00000511612 175 ntBASIC1.47□□□□□ -2.17
HOXD3P31249 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC1.47□□□□□ -2.17
HOXD3P31249 MIR8081-201ENST00000611533 95 ntBASIC1.47□□□□□ -2.17
HOXD3P31249 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC1.47□□□□□ -2.17
HOXD3P31249 AP000648.3-201ENST00000623539 4507 ntBASIC1.47□□□□□ -2.17
HOXD3P31249 Y_RNA.351-201ENST00000365436 96 ntBASIC1.46□□□□□ -2.18
HOXD3P31249 Y_RNA.370-201ENST00000365589 108 ntBASIC1.46□□□□□ -2.18
HOXD3P31249 SNORD18B-201ENST00000365659 72 ntBASIC1.46□□□□□ -2.18
HOXD3P31249 Y_RNA.525-201ENST00000384570 113 ntBASIC1.46□□□□□ -2.18
HOXD3P31249 AC087499.4-201ENST00000448505 178 ntBASIC1.46□□□□□ -2.18
HOXD3P31249 SNORA31.4-201ENST00000516049 129 ntBASIC1.46□□□□□ -2.18
HOXD3P31249 RNA5SP182-201ENST00000516064 82 ntBASIC1.46□□□□□ -2.18
HOXD3P31249 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC1.46□□□□□ -2.18
HOXD3P31249 HSPE1P19-201ENST00000603327 295 ntBASIC1.46□□□□□ -2.18
HOXD3P31249 AL022345.2-201ENST00000606307 135 ntBASIC1.46□□□□□ -2.18
HOXD3P31249 uc_338.20-201ENST00000621563 178 ntBASIC1.46□□□□□ -2.18
HOXD3P31249 MIR8063-201ENST00000621930 81 ntBASIC1.46□□□□□ -2.18
HOXD3P31249 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC1.46□□□□□ -2.18
HOXD3P31249 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC1.46□□□□□ -2.18
HOXD3P31249 RNU6-235P-201ENST00000362644 107 ntBASIC1.45□□□□□ -2.18
HOXD3P31249 SNORA27-201ENST00000384323 126 ntBASIC1.45□□□□□ -2.18
HOXD3P31249 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC1.45□□□□□ -2.18
HOXD3P31249 SNORA40.5-201ENST00000391061 128 ntBASIC1.45□□□□□ -2.18
HOXD3P31249 AL603914.1-201ENST00000401964 204 ntBASIC1.45□□□□□ -2.18
HOXD3P31249 SNX2P2-201ENST00000424553 323 ntBASIC1.45□□□□□ -2.18
HOXD3P31249 SNORD13-201ENST00000459299 104 ntBASIC1.45□□□□□ -2.18
HOXD3P31249 RNU6-1053P-201ENST00000515930 101 ntBASIC1.45□□□□□ -2.18
HOXD3P31249 SNORA25.15-201ENST00000516487 89 ntBASIC1.45□□□□□ -2.18
HOXD3P31249 AC015688.6-201ENST00000577737 104 ntBASIC1.45□□□□□ -2.18
HOXD3P31249 AC108081.1-201ENST00000604358 221 ntBASIC1.45□□□□□ -2.18
HOXD3P31249 AL365222.1-201ENST00000614661 98 ntBASIC1.45□□□□□ -2.18
HOXD3P31249 TUG1_4.1-201ENST00000619464 181 ntBASIC1.45□□□□□ -2.18
HOXD3P31249 Y_RNA.71-201ENST00000362892 104 ntBASIC1.44□□□□□ -2.18
HOXD3P31249 Y_RNA.114-201ENST00000363265 113 ntBASIC1.44□□□□□ -2.18
HOXD3P31249 RNA5SP190-201ENST00000365222 118 ntBASIC1.44□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 191.6 ms