| TFE3 | P19532 | RNU7-67P-201 | ENST00000459003 | 62 nt | BASIC | 2.39 | □□□□□ -2.03 | | |
| TFE3 | P19532 | SUMO2P16-201 | ENST00000519475 | 264 nt | BASIC | 2.39 | □□□□□ -2.03 | | |
| TFE3 | P19532 | MIR5007-201 | ENST00000583098 | 95 nt | BASIC | 2.39 | □□□□□ -2.03 | | |
| TFE3 | P19532 | BRDT-206 | ENST00000402388 | 3125 nt | APPRIS P3 TSL 1 (best) BASIC | 2.39 | □□□□□ -2.03 | | |
| TFE3 | P19532 | CEP57L1-216 | ENST00000521522 | 2259 nt | TSL 5 BASIC | 2.38 | □□□□□ -2.03 | | |
| TFE3 | P19532 | Y_RNA.281-201 | ENST00000364774 | 94 nt | BASIC | 2.38 | □□□□□ -2.03 | | |
| TFE3 | P19532 | RNA5SP261-201 | ENST00000410536 | 106 nt | BASIC | 2.38 | □□□□□ -2.03 | | |
| TFE3 | P19532 | MIR4679-2-201 | ENST00000578358 | 77 nt | BASIC | 2.38 | □□□□□ -2.03 | | |
| TFE3 | P19532 | MIR6766-201 | ENST00000622641 | 72 nt | BASIC | 2.38 | □□□□□ -2.03 | | |
| TFE3 | P19532 | AC021613.1-201 | ENST00000623880 | 111 nt | BASIC | 2.38 | □□□□□ -2.03 | | |
| TFE3 | P19532 | SIRT1-203 | ENST00000406900 | 3295 nt | TSL 2 BASIC | 2.37 | □□□□□ -2.03 | | |
| TFE3 | P19532 | RNU6-414P-201 | ENST00000363705 | 104 nt | BASIC | 2.37 | □□□□□ -2.03 | | |
| TFE3 | P19532 | RNU6-457P-201 | ENST00000363999 | 107 nt | BASIC | 2.37 | □□□□□ -2.03 | | |
| TFE3 | P19532 | RNU4-16P-201 | ENST00000364737 | 141 nt | BASIC | 2.37 | □□□□□ -2.03 | | |
| TFE3 | P19532 | SNORA24-201 | ENST00000384096 | 131 nt | BASIC | 2.37 | □□□□□ -2.03 | | |
| TFE3 | P19532 | AC011753.1-201 | ENST00000451001 | 220 nt | BASIC | 2.37 | □□□□□ -2.03 | | |
| TFE3 | P19532 | RNU2-13P-201 | ENST00000515909 | 113 nt | BASIC | 2.37 | □□□□□ -2.03 | | |
| TFE3 | P19532 | RNU7-123P-201 | ENST00000515911 | 60 nt | BASIC | 2.37 | □□□□□ -2.03 | | |
| TFE3 | P19532 | SNORA74.3-201 | ENST00000517108 | 154 nt | BASIC | 2.37 | □□□□□ -2.03 | | |
| TFE3 | P19532 | MIR4446-201 | ENST00000578505 | 67 nt | BASIC | 2.37 | □□□□□ -2.03 | | |
| TFE3 | P19532 | MIR3152-201 | ENST00000579801 | 74 nt | BASIC | 2.37 | □□□□□ -2.03 | | |
| TFE3 | P19532 | MIR548AR-201 | ENST00000582191 | 57 nt | BASIC | 2.37 | □□□□□ -2.03 | | |
| TFE3 | P19532 | MIR203B-201 | ENST00000636080 | 86 nt | BASIC | 2.37 | □□□□□ -2.03 | | |
| TFE3 | P19532 | SENP7-206 | ENST00000394094 | 4703 nt | APPRIS ALT2 TSL 1 (best) BASIC | 2.37 | □□□□□ -2.03 | | |
| TFE3 | P19532 | KNL1-204 | ENST00000527044 | 5404 nt | TSL 5 BASIC | 2.37 | □□□□□ -2.03 | | |
| TFE3 | P19532 | FSIP2-206 | ENST00000611759 | 3882 nt | APPRIS ALT2 TSL 5 BASIC | 2.37 | □□□□□ -2.03 | | |
| TFE3 | P19532 | STX7-202 | ENST00000367941 | 15791 nt | APPRIS P1 TSL 1 (best) BASIC | 2.36 | □□□□□ -2.03 | | |
| TFE3 | P19532 | RNA5SP393-201 | ENST00000363423 | 117 nt | BASIC | 2.36 | □□□□□ -2.03 | | |
| TFE3 | P19532 | RNU6-301P-201 | ENST00000384277 | 107 nt | BASIC | 2.36 | □□□□□ -2.03 | | |
| TFE3 | P19532 | RNU4-53P-201 | ENST00000410828 | 140 nt | BASIC | 2.36 | □□□□□ -2.03 | | |
| TFE3 | P19532 | AL022718.1-201 | ENST00000412004 | 84 nt | BASIC | 2.36 | □□□□□ -2.03 | | |
| TFE3 | P19532 | AC004965.1-201 | ENST00000413033 | 213 nt | BASIC | 2.36 | □□□□□ -2.03 | | |
| TFE3 | P19532 | AC008413.1-201 | ENST00000511864 | 177 nt | BASIC | 2.36 | □□□□□ -2.03 | | |
| TFE3 | P19532 | AL035078.1-202 | ENST00000531627 | 413 nt | TSL 2 BASIC | 2.36 | □□□□□ -2.03 | | |
| TFE3 | P19532 | AC005336.3-201 | ENST00000623833 | 2679 nt | BASIC | 2.36 | □□□□□ -2.03 | | |
| TFE3 | P19532 | LINC01790-201 | ENST00000447194 | 2852 nt | TSL 2 BASIC | 2.35 | □□□□□ -2.03 | | |
| TFE3 | P19532 | LIFR-201 | ENST00000263409 | 10089 nt | APPRIS P1 TSL 1 (best) BASIC | 2.35 | □□□□□ -2.03 | | |
| TFE3 | P19532 | RNA5SP276-201 | ENST00000362580 | 94 nt | BASIC | 2.35 | □□□□□ -2.03 | | |
| TFE3 | P19532 | RNU6-203P-201 | ENST00000384038 | 104 nt | BASIC | 2.35 | □□□□□ -2.03 | | |
| TFE3 | P19532 | Y_RNA.537-201 | ENST00000384626 | 109 nt | BASIC | 2.35 | □□□□□ -2.03 | | |
| TFE3 | P19532 | SNORD12C-201 | ENST00000386307 | 89 nt | BASIC | 2.35 | □□□□□ -2.03 | | |
| TFE3 | P19532 | RN7SKP192-201 | ENST00000411291 | 327 nt | BASIC | 2.35 | □□□□□ -2.03 | | |
| TFE3 | P19532 | AL162400.2-201 | ENST00000427547 | 157 nt | TSL 3 BASIC | 2.35 | □□□□□ -2.03 | | |
| TFE3 | P19532 | RNU6-322P-201 | ENST00000516010 | 103 nt | BASIC | 2.35 | □□□□□ -2.03 | | |
| TFE3 | P19532 | RNU7-43P-201 | ENST00000516554 | 64 nt | BASIC | 2.35 | □□□□□ -2.03 | | |
| TFE3 | P19532 | RNU6-958P-201 | ENST00000516995 | 106 nt | BASIC | 2.35 | □□□□□ -2.03 | | |
| TFE3 | P19532 | DEFB122-202 | ENST00000569013 | 197 nt | BASIC | 2.35 | □□□□□ -2.03 | | |
| TFE3 | P19532 | HSPE1P19-201 | ENST00000603327 | 295 nt | BASIC | 2.35 | □□□□□ -2.03 | | |
| TFE3 | P19532 | AC243994.1-201 | ENST00000618627 | 109 nt | BASIC | 2.35 | □□□□□ -2.03 | | |
| TFE3 | P19532 | AP000648.3-201 | ENST00000623539 | 4507 nt | BASIC | 2.34 | □□□□□ -2.03 | | |
| TFE3 | P19532 | MIR194-1-201 | ENST00000384892 | 85 nt | BASIC | 2.34 | □□□□□ -2.03 | | |
| TFE3 | P19532 | MIR221-201 | ENST00000385135 | 110 nt | BASIC | 2.34 | □□□□□ -2.03 | | |
| TFE3 | P19532 | RNA5SP144-201 | ENST00000410846 | 116 nt | BASIC | 2.34 | □□□□□ -2.03 | | |
| TFE3 | P19532 | JTBP1-201 | ENST00000441314 | 247 nt | BASIC | 2.34 | □□□□□ -2.03 | | |
| TFE3 | P19532 | RPL23AP6-201 | ENST00000446637 | 472 nt | BASIC | 2.34 | □□□□□ -2.03 | | |
| TFE3 | P19532 | RNU7-73P-201 | ENST00000458743 | 63 nt | BASIC | 2.34 | □□□□□ -2.03 | | |
| TFE3 | P19532 | RNA5SP24-201 | ENST00000516478 | 95 nt | BASIC | 2.34 | □□□□□ -2.03 | | |
| TFE3 | P19532 | SNORA31.11-201 | ENST00000516528 | 139 nt | BASIC | 2.34 | □□□□□ -2.03 | | |
| TFE3 | P19532 | IGHVII-40-1-201 | ENST00000517316 | 58 nt | BASIC | 2.34 | □□□□□ -2.03 | | |
| TFE3 | P19532 | DNAJC19P9-201 | ENST00000555084 | 351 nt | BASIC | 2.34 | □□□□□ -2.03 | | |
| TFE3 | P19532 | MIR3163-201 | ENST00000581592 | 73 nt | BASIC | 2.34 | □□□□□ -2.03 | | |
| TFE3 | P19532 | MIR4791-201 | ENST00000607666 | 84 nt | BASIC | 2.34 | □□□□□ -2.03 | | |
| TFE3 | P19532 | AC009831.4-201 | ENST00000620744 | 325 nt | BASIC | 2.34 | □□□□□ -2.03 | | |
| TFE3 | P19532 | AL589743.1-201 | ENST00000551932 | 2712 nt | BASIC | 2.34 | □□□□□ -2.03 | | |
| TFE3 | P19532 | BRCA1-202 | ENST00000354071 | 4497 nt | TSL 1 (best) BASIC | 2.34 | □□□□□ -2.03 | | |
| TFE3 | P19532 | RGPD1-204 | ENST00000559485 | 5247 nt | APPRIS P2 TSL 1 (best) BASIC | 2.34 | □□□□□ -2.04 | | |
| TFE3 | P19532 | AC092881.1-201 | ENST00000638218 | 2733 nt | BASIC | 2.33 | □□□□□ -2.04 | | |
| TFE3 | P19532 | Y_RNA.85-201 | ENST00000363014 | 111 nt | BASIC | 2.33 | □□□□□ -2.04 | | |
| TFE3 | P19532 | RNA5SP126-201 | ENST00000365092 | 109 nt | BASIC | 2.33 | □□□□□ -2.04 | | |
| TFE3 | P19532 | RNU6-1319P-201 | ENST00000390855 | 104 nt | BASIC | 2.33 | □□□□□ -2.04 | | |
| TFE3 | P19532 | RNU6-747P-201 | ENST00000390928 | 104 nt | BASIC | 2.33 | □□□□□ -2.04 | | |
| TFE3 | P19532 | SNORD28B-201 | ENST00000390993 | 75 nt | BASIC | 2.33 | □□□□□ -2.04 | | |
| TFE3 | P19532 | RNU6-241P-201 | ENST00000391148 | 104 nt | BASIC | 2.33 | □□□□□ -2.04 | | |
| TFE3 | P19532 | RNU6-177P-201 | ENST00000411257 | 104 nt | BASIC | 2.33 | □□□□□ -2.04 | | |
| TFE3 | P19532 | AC244636.1-201 | ENST00000421152 | 228 nt | BASIC | 2.33 | □□□□□ -2.04 | | |
| TFE3 | P19532 | RNU6ATAC9P-201 | ENST00000516210 | 116 nt | BASIC | 2.33 | □□□□□ -2.04 | | |
| TFE3 | P19532 | RNU2-35P-201 | ENST00000516446 | 142 nt | BASIC | 2.33 | □□□□□ -2.04 | | |
| TFE3 | P19532 | AL773524.1-201 | ENST00000614065 | 229 nt | BASIC | 2.33 | □□□□□ -2.04 | | |
| TFE3 | P19532 | SLC8A1-AS1-230 | ENST00000627538 | 212 nt | TSL 5 BASIC | 2.33 | □□□□□ -2.04 | | |
| TFE3 | P19532 | TAB3-205 | ENST00000378933 | 6671 nt | APPRIS P1 TSL 1 (best) BASIC | 2.33 | □□□□□ -2.04 | | |
| TFE3 | P19532 | AGTPBP1-205 | ENST00000376083 | 4208 nt | APPRIS P1 TSL 1 (best) BASIC | 2.32 | □□□□□ -2.04 | | |
| TFE3 | P19532 | OSTN-201 | ENST00000339051 | 402 nt | APPRIS P1 TSL 1 (best) BASIC | 2.32 | □□□□□ -2.04 | | |
| TFE3 | P19532 | RNU6-661P-201 | ENST00000362409 | 107 nt | BASIC | 2.32 | □□□□□ -2.04 | | |
| TFE3 | P19532 | Y_RNA.49-201 | ENST00000362714 | 112 nt | BASIC | 2.32 | □□□□□ -2.04 | | |
| TFE3 | P19532 | RNU6-1107P-201 | ENST00000364817 | 104 nt | BASIC | 2.32 | □□□□□ -2.04 | | |
| TFE3 | P19532 | AL023284.1-201 | ENST00000403956 | 276 nt | BASIC | 2.32 | □□□□□ -2.04 | | |
| TFE3 | P19532 | SNORA3.2-201 | ENST00000408221 | 125 nt | BASIC | 2.32 | □□□□□ -2.04 | | |
| TFE3 | P19532 | RN7SL429P-201 | ENST00000479090 | 223 nt | BASIC | 2.32 | □□□□□ -2.04 | | |
| TFE3 | P19532 | RN7SL489P-201 | ENST00000486185 | 223 nt | BASIC | 2.32 | □□□□□ -2.04 | | |
| TFE3 | P19532 | RN7SL327P-201 | ENST00000488659 | 223 nt | BASIC | 2.32 | □□□□□ -2.04 | | |
| TFE3 | P19532 | SNORA31.4-201 | ENST00000516049 | 129 nt | BASIC | 2.32 | □□□□□ -2.04 | | |
| TFE3 | P19532 | SNORD53-201 | ENST00000579969 | 78 nt | BASIC | 2.32 | □□□□□ -2.04 | | |
| TFE3 | P19532 | MIR4435-1-201 | ENST00000582552 | 80 nt | BASIC | 2.32 | □□□□□ -2.04 | | |
| TFE3 | P19532 | RN7SL853P-201 | ENST00000617250 | 223 nt | BASIC | 2.32 | □□□□□ -2.04 | | |
| TFE3 | P19532 | HOTAIRM1_4.1-201 | ENST00000617934 | 102 nt | BASIC | 2.32 | □□□□□ -2.04 | | |
| TFE3 | P19532 | AC106754.2-201 | ENST00000623006 | 233 nt | BASIC | 2.32 | □□□□□ -2.04 | | |
| TFE3 | P19532 | FO624990.1-201 | ENST00000636373 | 85 nt | BASIC | 2.32 | □□□□□ -2.04 | | |
| TFE3 | P19532 | MIER3-202 | ENST00000381199 | 5188 nt | APPRIS ALT1 TSL 1 (best) BASIC | 2.32 | □□□□□ -2.04 | | |
| TFE3 | P19532 | RNU6-917P-201 | ENST00000516294 | 104 nt | BASIC | 2.31 | □□□□□ -2.04 | | |
| TFE3 | P19532 | IGKV3-31-201 | ENST00000523109 | 329 nt | BASIC | 2.31 | □□□□□ -2.04 | | |