Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 SNORA28-201ENST00000606769 126 ntBASIC1.61□□□□□ -2.15
LDB3O75112 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC1.6□□□□□ -2.15
LDB3O75112 Y_RNA.81-201ENST00000362997 102 ntBASIC1.6□□□□□ -2.15
LDB3O75112 Y_RNA.265-201ENST00000364677 108 ntBASIC1.6□□□□□ -2.15
LDB3O75112 SNORD24-201ENST00000383884 75 ntBASIC1.6□□□□□ -2.15
LDB3O75112 RNA5SP482-201ENST00000391269 118 ntBASIC1.6□□□□□ -2.15
LDB3O75112 AL627390.1-201ENST00000396055 340 ntBASIC1.6□□□□□ -2.15
LDB3O75112 MIR548O-201ENST00000408583 114 ntBASIC1.6□□□□□ -2.15
LDB3O75112 Y_RNA.629-201ENST00000411368 105 ntBASIC1.6□□□□□ -2.15
LDB3O75112 CALM2P4-201ENST00000430810 426 ntBASIC1.6□□□□□ -2.15
LDB3O75112 SNRPGP13-201ENST00000442212 177 ntBASIC1.6□□□□□ -2.15
LDB3O75112 AL158147.1-201ENST00000443970 75 ntBASIC1.6□□□□□ -2.15
LDB3O75112 AC114811.1-201ENST00000507207 168 ntBASIC1.6□□□□□ -2.15
LDB3O75112 SNORD45.4-201ENST00000516629 73 ntBASIC1.6□□□□□ -2.15
LDB3O75112 IGHVIII-67-2-201ENST00000519849 88 ntBASIC1.6□□□□□ -2.15
LDB3O75112 MIR4709-201ENST00000577272 72 ntBASIC1.6□□□□□ -2.15
LDB3O75112 MIR764-201ENST00000390811 85 ntBASIC1.59□□□□□ -2.15
LDB3O75112 AL603914.1-201ENST00000401964 204 ntBASIC1.59□□□□□ -2.15
LDB3O75112 AL034345.1-201ENST00000407768 123 ntBASIC1.59□□□□□ -2.15
LDB3O75112 RNU6-938P-201ENST00000411285 103 ntBASIC1.59□□□□□ -2.15
LDB3O75112 AL591806.2-201ENST00000433122 173 ntBASIC1.59□□□□□ -2.15
LDB3O75112 SNORA25.15-201ENST00000516487 89 ntBASIC1.59□□□□□ -2.15
LDB3O75112 SNORD36C-201ENST00000516733 66 ntBASIC1.59□□□□□ -2.15
LDB3O75112 RNU6-1149P-201ENST00000516810 97 ntBASIC1.59□□□□□ -2.15
LDB3O75112 AC024614.2-201ENST00000577584 372 ntBASIC1.59□□□□□ -2.15
LDB3O75112 MIR3198-2-201ENST00000577868 80 ntBASIC1.59□□□□□ -2.15
LDB3O75112 AL359881.1-201ENST00000602916 267 ntBASIC1.59□□□□□ -2.15
LDB3O75112 AC012493.3-201ENST00000604494 112 ntBASIC1.59□□□□□ -2.15
LDB3O75112 AL022345.2-201ENST00000606307 135 ntBASIC1.59□□□□□ -2.15
LDB3O75112 ZNFX1-AS1_2.1-201ENST00000610973 93 ntBASIC1.59□□□□□ -2.15
LDB3O75112 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.58□□□□□ -2.16
LDB3O75112 RNU6-1084P-201ENST00000362498 107 ntBASIC1.58□□□□□ -2.16
LDB3O75112 RNU6-1325P-201ENST00000364905 105 ntBASIC1.58□□□□□ -2.16
LDB3O75112 Y_RNA.547-201ENST00000384654 119 ntBASIC1.58□□□□□ -2.16
LDB3O75112 Y_RNA.563-201ENST00000384707 108 ntBASIC1.58□□□□□ -2.16
LDB3O75112 RNU6-1031P-201ENST00000384773 107 ntBASIC1.58□□□□□ -2.16
LDB3O75112 MIR30A-201ENST00000385092 71 ntBASIC1.58□□□□□ -2.16
LDB3O75112 U8.16-201ENST00000391279 133 ntBASIC1.58□□□□□ -2.16
LDB3O75112 SNORA26-201ENST00000391286 122 ntBASIC1.58□□□□□ -2.16
LDB3O75112 MTATP6P29-201ENST00000415057 132 ntBASIC1.58□□□□□ -2.16
LDB3O75112 AC008834.1-201ENST00000511612 175 ntBASIC1.58□□□□□ -2.16
LDB3O75112 SNORD33.1-201ENST00000516213 88 ntBASIC1.58□□□□□ -2.16
LDB3O75112 Y_RNA.692-201ENST00000516627 105 ntBASIC1.58□□□□□ -2.16
LDB3O75112 Y_RNA.712-201ENST00000517011 92 ntBASIC1.58□□□□□ -2.16
LDB3O75112 RNU6-548P-201ENST00000517083 115 ntBASIC1.58□□□□□ -2.16
LDB3O75112 DEFB122-202ENST00000569013 197 ntBASIC1.58□□□□□ -2.16
LDB3O75112 AC006441.5-201ENST00000612680 209 ntBASIC1.58□□□□□ -2.16
LDB3O75112 MIR6129-201ENST00000616087 109 ntBASIC1.58□□□□□ -2.16
LDB3O75112 MIR3914-2-201ENST00000637339 95 ntBASIC1.58□□□□□ -2.16
LDB3O75112 Y_RNA.273-201ENST00000364703 102 ntBASIC1.57□□□□□ -2.16
LDB3O75112 RNU6-439P-201ENST00000384188 106 ntBASIC1.57□□□□□ -2.16
LDB3O75112 Y_RNA.494-201ENST00000384432 111 ntBASIC1.57□□□□□ -2.16
LDB3O75112 Y_RNA.617-201ENST00000410920 90 ntBASIC1.57□□□□□ -2.16
LDB3O75112 HMGN2P23-201ENST00000456759 269 ntBASIC1.57□□□□□ -2.16
LDB3O75112 RNU7-34P-201ENST00000459394 64 ntBASIC1.57□□□□□ -2.16
LDB3O75112 AC108752.1-201ENST00000484679 576 ntTSL 5 BASIC1.57□□□□□ -2.16
LDB3O75112 SNORA31.4-201ENST00000516049 129 ntBASIC1.57□□□□□ -2.16
LDB3O75112 AC090049.2-201ENST00000550377 109 ntBASIC1.57□□□□□ -2.16
LDB3O75112 MIR502-201ENST00000606349 86 ntBASIC1.57□□□□□ -2.16
LDB3O75112 SNORD14E-201ENST00000364009 85 ntBASIC1.56□□□□□ -2.16
LDB3O75112 snoU2-30.1-201ENST00000365012 70 ntBASIC1.56□□□□□ -2.16
LDB3O75112 SNORD58C-201ENST00000365223 64 ntBASIC1.56□□□□□ -2.16
LDB3O75112 RNU6-1292P-201ENST00000383856 107 ntBASIC1.56□□□□□ -2.16
LDB3O75112 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC1.56□□□□□ -2.16
LDB3O75112 RNU6-1061P-201ENST00000516530 99 ntBASIC1.56□□□□□ -2.16
LDB3O75112 Y_RNA.714-201ENST00000517065 90 ntBASIC1.56□□□□□ -2.16
LDB3O75112 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC1.56□□□□□ -2.16
LDB3O75112 AC087685.1-201ENST00000587507 141 ntBASIC1.56□□□□□ -2.16
LDB3O75112 MIR8074-201ENST00000615081 81 ntBASIC1.56□□□□□ -2.16
LDB3O75112 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.56□□□□□ -2.16
LDB3O75112 AL442644.1-201ENST00000454390 3105 ntBASIC1.55□□□□□ -2.16
LDB3O75112 Y_RNA.37-201ENST00000362606 108 ntBASIC1.55□□□□□ -2.16
LDB3O75112 SNORA63.4-201ENST00000362763 126 ntBASIC1.55□□□□□ -2.16
LDB3O75112 RNU6-414P-201ENST00000363705 104 ntBASIC1.55□□□□□ -2.16
LDB3O75112 RNU6-442P-201ENST00000383968 104 ntBASIC1.55□□□□□ -2.16
LDB3O75112 RNU6-424P-201ENST00000384367 105 ntBASIC1.55□□□□□ -2.16
LDB3O75112 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC1.55□□□□□ -2.16
LDB3O75112 AL035461.1-201ENST00000421490 332 ntBASIC1.55□□□□□ -2.16
LDB3O75112 AC093850.1-201ENST00000454121 251 ntBASIC1.55□□□□□ -2.16
LDB3O75112 AC099513.1-201ENST00000490423 301 ntBASIC1.55□□□□□ -2.16
LDB3O75112 RNA5SP168-201ENST00000516642 112 ntBASIC1.55□□□□□ -2.16
LDB3O75112 Y_RNA.757-201ENST00000578934 114 ntBASIC1.55□□□□□ -2.16
LDB3O75112 MIR4524B-201ENST00000581569 115 ntBASIC1.55□□□□□ -2.16
LDB3O75112 MIR5197-201ENST00000583721 112 ntBASIC1.55□□□□□ -2.16
LDB3O75112 AC021506.2-201ENST00000612354 169 ntBASIC1.55□□□□□ -2.16
LDB3O75112 AC015726.2-201ENST00000620112 122 ntBASIC1.55□□□□□ -2.16
LDB3O75112 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC1.55□□□□□ -2.16
LDB3O75112 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC1.54□□□□□ -2.16
LDB3O75112 MIR424-201ENST00000362227 98 ntBASIC1.54□□□□□ -2.16
LDB3O75112 SNORD115-28-201ENST00000363931 81 ntBASIC1.54□□□□□ -2.16
LDB3O75112 RNA5SP190-201ENST00000365222 118 ntBASIC1.54□□□□□ -2.16
LDB3O75112 Y_RNA.366-201ENST00000365540 102 ntBASIC1.54□□□□□ -2.16
LDB3O75112 MIRLET7F2-201ENST00000385277 83 ntBASIC1.54□□□□□ -2.16
LDB3O75112 MIR802-201ENST00000390235 94 ntBASIC1.54□□□□□ -2.16
LDB3O75112 snoU13.23-201ENST00000458863 104 ntBASIC1.54□□□□□ -2.16
LDB3O75112 SNORD13-201ENST00000459299 104 ntBASIC1.54□□□□□ -2.16
LDB3O75112 AC108210.2-201ENST00000503681 201 ntBASIC1.54□□□□□ -2.16
LDB3O75112 RNU6-126P-201ENST00000516685 103 ntBASIC1.54□□□□□ -2.16
LDB3O75112 AC133485.4-201ENST00000561835 220 ntBASIC1.54□□□□□ -2.16
LDB3O75112 AC138907.4-201ENST00000570107 226 ntBASIC1.54□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 107.3 ms