Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 RNU7-96P-201ENST00000459535 64 ntBASIC1.92□□□□□ -2.1
HOXA3O43365 RPS29P24-201ENST00000486345 171 ntBASIC1.92□□□□□ -2.1
HOXA3O43365 AC026436.1-201ENST00000510537 270 ntBASIC1.92□□□□□ -2.1
HOXA3O43365 RNU6-998P-201ENST00000515894 101 ntBASIC1.92□□□□□ -2.1
HOXA3O43365 RNU6-237P-201ENST00000515985 71 ntBASIC1.92□□□□□ -2.1
HOXA3O43365 Y_RNA.709-201ENST00000516952 92 ntBASIC1.92□□□□□ -2.1
HOXA3O43365 AC090821.2-201ENST00000523552 176 ntBASIC1.92□□□□□ -2.1
HOXA3O43365 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC1.92□□□□□ -2.1
HOXA3O43365 HSPE1P19-201ENST00000603327 295 ntBASIC1.92□□□□□ -2.1
HOXA3O43365 MIR1291-201ENST00000627649 87 ntBASIC1.92□□□□□ -2.1
HOXA3O43365 EYS-211ENST00000503581 10589 ntAPPRIS P3 TSL 5 BASIC1.92□□□□□ -2.1
HOXA3O43365 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC1.92□□□□□ -2.1
HOXA3O43365 SNORA16B-201ENST00000364674 135 ntBASIC1.91□□□□□ -2.1
HOXA3O43365 AC011753.1-201ENST00000451001 220 ntBASIC1.91□□□□□ -2.1
HOXA3O43365 RNU6-589P-201ENST00000516485 107 ntBASIC1.91□□□□□ -2.1
HOXA3O43365 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC1.91□□□□□ -2.1
HOXA3O43365 MIR4648-201ENST00000580107 72 ntBASIC1.91□□□□□ -2.1
HOXA3O43365 MIR548AR-201ENST00000582191 57 ntBASIC1.91□□□□□ -2.1
HOXA3O43365 FAM106DP-201ENST00000586416 501 ntBASIC1.91□□□□□ -2.1
HOXA3O43365 AC021443.1-201ENST00000604478 211 ntBASIC1.91□□□□□ -2.1
HOXA3O43365 AC103810.6-201ENST00000606708 136 ntBASIC1.91□□□□□ -2.1
HOXA3O43365 MIR7843-201ENST00000622274 79 ntBASIC1.91□□□□□ -2.1
HOXA3O43365 MIR6873-201ENST00000622788 63 ntBASIC1.91□□□□□ -2.1
HOXA3O43365 UGP2-230ENST00000626380 276 ntTSL 5 BASIC1.91□□□□□ -2.1
HOXA3O43365 AASDH-207ENST00000513376 3241 ntTSL 1 (best) BASIC1.91□□□□□ -2.1
HOXA3O43365 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC1.91□□□□□ -2.1
HOXA3O43365 MIR302B-201ENST00000362188 73 ntBASIC1.9□□□□□ -2.11
HOXA3O43365 MIR504-201ENST00000385065 83 ntBASIC1.9□□□□□ -2.11
HOXA3O43365 AL035398.1-201ENST00000430869 322 ntBASIC1.9□□□□□ -2.11
HOXA3O43365 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC1.9□□□□□ -2.11
HOXA3O43365 SNORD123-201ENST00000459473 70 ntBASIC1.9□□□□□ -2.11
HOXA3O43365 SUMO2P16-201ENST00000519475 264 ntBASIC1.9□□□□□ -2.11
HOXA3O43365 AL137847.3-201ENST00000611521 109 ntBASIC1.9□□□□□ -2.11
HOXA3O43365 AC068631.1-220ENST00000630726 256 ntTSL 5 BASIC1.9□□□□□ -2.11
HOXA3O43365 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC1.9□□□□□ -2.11
HOXA3O43365 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC1.9□□□□□ -2.11
HOXA3O43365 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC1.9□□□□□ -2.11
HOXA3O43365 RNU6-1123P-201ENST00000362347 106 ntBASIC1.89□□□□□ -2.11
HOXA3O43365 Y_RNA.35-201ENST00000362601 101 ntBASIC1.89□□□□□ -2.11
HOXA3O43365 SNORA22-201ENST00000383907 134 ntBASIC1.89□□□□□ -2.11
HOXA3O43365 MIR194-1-201ENST00000384892 85 ntBASIC1.89□□□□□ -2.11
HOXA3O43365 SNORD28B-201ENST00000390993 75 ntBASIC1.89□□□□□ -2.11
HOXA3O43365 AC004965.1-201ENST00000413033 213 ntBASIC1.89□□□□□ -2.11
HOXA3O43365 RPS12P2-201ENST00000439728 269 ntBASIC1.89□□□□□ -2.11
HOXA3O43365 AC079760.1-201ENST00000456952 202 ntTSL 3 BASIC1.89□□□□□ -2.11
HOXA3O43365 RNU2-11P-201ENST00000459191 187 ntBASIC1.89□□□□□ -2.11
HOXA3O43365 snoU13.15-201ENST00000459407 104 ntBASIC1.89□□□□□ -2.11
HOXA3O43365 COX6CP6-201ENST00000490840 228 ntBASIC1.89□□□□□ -2.11
HOXA3O43365 SNORA31.4-201ENST00000516049 129 ntBASIC1.89□□□□□ -2.11
HOXA3O43365 RNU6-958P-201ENST00000516995 106 ntBASIC1.89□□□□□ -2.11
HOXA3O43365 IGKV3-31-201ENST00000523109 329 ntBASIC1.89□□□□□ -2.11
HOXA3O43365 MIR1273D-201ENST00000577266 86 ntBASIC1.89□□□□□ -2.11
HOXA3O43365 AL773524.1-201ENST00000614065 229 ntBASIC1.89□□□□□ -2.11
HOXA3O43365 AC106754.2-201ENST00000623006 233 ntBASIC1.89□□□□□ -2.11
HOXA3O43365 AC095038.3-201ENST00000634439 195 ntBASIC1.89□□□□□ -2.11
HOXA3O43365 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC1.88□□□□□ -2.11
HOXA3O43365 Y_RNA.298-201ENST00000364960 107 ntBASIC1.88□□□□□ -2.11
HOXA3O43365 TRAJ26-201ENST00000390511 60 ntAPPRIS P1 BASIC1.88□□□□□ -2.11
HOXA3O43365 RNU7-67P-201ENST00000459003 62 ntBASIC1.88□□□□□ -2.11
HOXA3O43365 RNU7-164P-201ENST00000459221 62 ntBASIC1.88□□□□□ -2.11
HOXA3O43365 PDCD5P2-201ENST00000507570 312 ntBASIC1.88□□□□□ -2.11
HOXA3O43365 RNU2-13P-201ENST00000515909 113 ntBASIC1.88□□□□□ -2.11
HOXA3O43365 MIR4524B-201ENST00000581569 115 ntBASIC1.88□□□□□ -2.11
HOXA3O43365 MIR4305-201ENST00000583252 102 ntBASIC1.88□□□□□ -2.11
HOXA3O43365 SIRT1-203ENST00000406900 3295 ntTSL 2 BASIC1.88□□□□□ -2.11
HOXA3O43365 TXLNGY-201ENST00000253320 7299 ntTSL 2 BASIC1.87□□□□□ -2.11
HOXA3O43365 SNORA63.4-201ENST00000362763 126 ntBASIC1.87□□□□□ -2.11
HOXA3O43365 RNU4-16P-201ENST00000364737 141 ntBASIC1.87□□□□□ -2.11
HOXA3O43365 MIR570-201ENST00000384917 97 ntBASIC1.87□□□□□ -2.11
HOXA3O43365 AC074131.1-201ENST00000514662 253 ntTSL 2 BASIC1.87□□□□□ -2.11
HOXA3O43365 RNY4P20-201ENST00000516678 93 ntBASIC1.87□□□□□ -2.11
HOXA3O43365 MIR3683-201ENST00000580847 82 ntBASIC1.87□□□□□ -2.11
HOXA3O43365 LMBR1-222ENST00000638959 93 ntTSL 5 BASIC1.87□□□□□ -2.11
HOXA3O43365 FGF7-206ENST00000614567 3936 ntAPPRIS P1 TSL 1 (best) BASIC1.86□□□□□ -2.11
HOXA3O43365 AC008555.8-201ENST00000623602 2168 ntBASIC1.86□□□□□ -2.11
HOXA3O43365 AC016717.2-201ENST00000609089 5141 ntBASIC1.86□□□□□ -2.11
HOXA3O43365 RNU6-414P-201ENST00000363705 104 ntBASIC1.86□□□□□ -2.11
HOXA3O43365 Y_RNA.198-201ENST00000364013 98 ntBASIC1.86□□□□□ -2.11
HOXA3O43365 SNORA6-201ENST00000384033 151 ntBASIC1.86□□□□□ -2.11
HOXA3O43365 AC063976.4-201ENST00000421971 163 ntBASIC1.86□□□□□ -2.11
HOXA3O43365 RPS29P29-201ENST00000456396 171 ntBASIC1.86□□□□□ -2.11
HOXA3O43365 RNU6-917P-201ENST00000516294 104 ntBASIC1.86□□□□□ -2.11
HOXA3O43365 RNA5SP82-201ENST00000516707 92 ntBASIC1.86□□□□□ -2.11
HOXA3O43365 SNORA74.3-201ENST00000517108 154 ntBASIC1.86□□□□□ -2.11
HOXA3O43365 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC1.86□□□□□ -2.11
HOXA3O43365 DEFB122-202ENST00000569013 197 ntBASIC1.86□□□□□ -2.11
HOXA3O43365 AC243994.1-201ENST00000618627 109 ntBASIC1.86□□□□□ -2.11
HOXA3O43365 MIR203B-201ENST00000636080 86 ntBASIC1.86□□□□□ -2.11
HOXA3O43365 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC1.86□□□□□ -2.11
HOXA3O43365 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC1.86□□□□□ -2.11
HOXA3O43365 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC1.86□□□□□ -2.11
HOXA3O43365 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC1.86□□□□□ -2.11
HOXA3O43365 SNORA70.7-201ENST00000384159 133 ntBASIC1.85□□□□□ -2.11
HOXA3O43365 RNU6-439P-201ENST00000384188 106 ntBASIC1.85□□□□□ -2.11
HOXA3O43365 RNU6-880P-201ENST00000384526 107 ntBASIC1.85□□□□□ -2.11
HOXA3O43365 AL161935.2-201ENST00000414627 60 ntBASIC1.85□□□□□ -2.11
HOXA3O43365 AC244636.1-201ENST00000421152 228 ntBASIC1.85□□□□□ -2.11
HOXA3O43365 JTBP1-201ENST00000441314 247 ntBASIC1.85□□□□□ -2.11
HOXA3O43365 RNU7-45P-201ENST00000459460 63 ntBASIC1.85□□□□□ -2.11
HOXA3O43365 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC1.85□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 308.2 ms