Protein–RNA interactions for Protein: O00635

TRIM38, E3 ubiquitin-protein ligase TRIM38, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM38O00635 AF228730.3-201ENST00000436691 102 ntBASIC2.02□□□□□ -2.09
TRIM38O00635 HMGN2P32-201ENST00000444648 269 ntBASIC2.02□□□□□ -2.09
TRIM38O00635 RPL23AP63-201ENST00000498752 471 ntBASIC2.02□□□□□ -2.09
TRIM38O00635 RNA5SP458-201ENST00000516188 119 ntBASIC2.02□□□□□ -2.09
TRIM38O00635 AC011604.1-201ENST00000545978 196 ntBASIC2.02□□□□□ -2.09
TRIM38O00635 MIR3129-201ENST00000581095 76 ntBASIC2.02□□□□□ -2.09
TRIM38O00635 AC073413.2-201ENST00000604332 360 ntBASIC2.02□□□□□ -2.09
TRIM38O00635 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC2.02□□□□□ -2.09
TRIM38O00635 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC2.02□□□□□ -2.09
TRIM38O00635 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC2.02□□□□□ -2.09
TRIM38O00635 Y_RNA.85-201ENST00000363014 111 ntBASIC2.01□□□□□ -2.09
TRIM38O00635 Y_RNA.328-201ENST00000365208 113 ntBASIC2.01□□□□□ -2.09
TRIM38O00635 SNORD12C-201ENST00000386307 89 ntBASIC2.01□□□□□ -2.09
TRIM38O00635 RNU6-360P-201ENST00000390944 104 ntBASIC2.01□□□□□ -2.09
TRIM38O00635 AC019129.1-201ENST00000403786 261 ntBASIC2.01□□□□□ -2.09
TRIM38O00635 NDUFA4P2-201ENST00000489989 244 ntBASIC2.01□□□□□ -2.09
TRIM38O00635 OR9P1P-201ENST00000496431 281 ntBASIC2.01□□□□□ -2.09
TRIM38O00635 RNU6-762P-201ENST00000517107 102 ntBASIC2.01□□□□□ -2.09
TRIM38O00635 RNU6-365P-201ENST00000517113 106 ntBASIC2.01□□□□□ -2.09
TRIM38O00635 AC007012.1-201ENST00000567192 175 ntBASIC2.01□□□□□ -2.09
TRIM38O00635 MIR2681-201ENST00000581814 105 ntBASIC2.01□□□□□ -2.09
TRIM38O00635 MIR6845-201ENST00000613182 61 ntBASIC2.01□□□□□ -2.09
TRIM38O00635 AP001318.4-201ENST00000616637 121 ntBASIC2.01□□□□□ -2.09
TRIM38O00635 AL591926.4-201ENST00000616895 298 ntBASIC2.01□□□□□ -2.09
TRIM38O00635 AL035470.1-201ENST00000622571 220 ntBASIC2.01□□□□□ -2.09
TRIM38O00635 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC2□□□□□ -2.09
TRIM38O00635 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC2□□□□□ -2.09
TRIM38O00635 RNU6-766P-201ENST00000362478 107 ntBASIC2□□□□□ -2.09
TRIM38O00635 Y_RNA.163-201ENST00000363702 113 ntBASIC2□□□□□ -2.09
TRIM38O00635 RNU6-1131P-201ENST00000364955 107 ntBASIC2□□□□□ -2.09
TRIM38O00635 MIR520G-201ENST00000385064 90 ntBASIC2□□□□□ -2.09
TRIM38O00635 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC2□□□□□ -2.09
TRIM38O00635 SNORD72-201ENST00000390994 80 ntBASIC2□□□□□ -2.09
TRIM38O00635 SNORA26-201ENST00000391286 122 ntBASIC2□□□□□ -2.09
TRIM38O00635 HSPE1P9-201ENST00000440046 311 ntBASIC2□□□□□ -2.09
TRIM38O00635 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC2□□□□□ -2.09
TRIM38O00635 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC2□□□□□ -2.09
TRIM38O00635 RNU6-294P-201ENST00000364999 102 ntBASIC1.99□□□□□ -2.09
TRIM38O00635 Y_RNA.366-201ENST00000365540 102 ntBASIC1.99□□□□□ -2.09
TRIM38O00635 RNU6-756P-201ENST00000383997 107 ntBASIC1.99□□□□□ -2.09
TRIM38O00635 SNORD61-201ENST00000384252 73 ntBASIC1.99□□□□□ -2.09
TRIM38O00635 MIR570-201ENST00000384917 97 ntBASIC1.99□□□□□ -2.09
TRIM38O00635 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC1.99□□□□□ -2.09
TRIM38O00635 SNORA12.1-201ENST00000390873 148 ntBASIC1.99□□□□□ -2.09
TRIM38O00635 RNU6ATAC38P-201ENST00000408119 126 ntBASIC1.99□□□□□ -2.09
TRIM38O00635 RNY4P29-201ENST00000410801 97 ntBASIC1.99□□□□□ -2.09
TRIM38O00635 AC023449.1-201ENST00000454464 154 ntBASIC1.99□□□□□ -2.09
TRIM38O00635 snoU13.27-201ENST00000459278 104 ntBASIC1.99□□□□□ -2.09
TRIM38O00635 RNA5SP182-201ENST00000516064 82 ntBASIC1.99□□□□□ -2.09
TRIM38O00635 RNU6-412P-201ENST00000516434 106 ntBASIC1.99□□□□□ -2.09
TRIM38O00635 SNORA44.1-201ENST00000517031 108 ntBASIC1.99□□□□□ -2.09
TRIM38O00635 AC022217.4-201ENST00000604389 163 ntBASIC1.99□□□□□ -2.09
TRIM38O00635 AC103810.8-201ENST00000607347 118 ntBASIC1.99□□□□□ -2.09
TRIM38O00635 uc_338.20-201ENST00000621563 178 ntBASIC1.99□□□□□ -2.09
TRIM38O00635 MIR6079-201ENST00000635807 62 ntBASIC1.99□□□□□ -2.09
TRIM38O00635 MIR376A2-201ENST00000636782 80 ntBASIC1.99□□□□□ -2.09
TRIM38O00635 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC1.99□□□□□ -2.09
TRIM38O00635 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC1.99□□□□□ -2.09
TRIM38O00635 RNU1-17P-201ENST00000363022 152 ntBASIC1.98□□□□□ -2.09
TRIM38O00635 MIR488-201ENST00000365739 83 ntBASIC1.98□□□□□ -2.09
TRIM38O00635 MIR548A2-201ENST00000384956 97 ntBASIC1.98□□□□□ -2.09
TRIM38O00635 HMGN2P19-201ENST00000425149 265 ntBASIC1.98□□□□□ -2.09
TRIM38O00635 AC245047.3-201ENST00000429428 127 ntBASIC1.98□□□□□ -2.09
TRIM38O00635 MTATP6P21-201ENST00000440681 189 ntBASIC1.98□□□□□ -2.09
TRIM38O00635 RNU6-1149P-201ENST00000516810 97 ntBASIC1.98□□□□□ -2.09
TRIM38O00635 SCARNA15-202ENST00000516881 127 ntBASIC1.98□□□□□ -2.09
TRIM38O00635 RNU6-1270P-201ENST00000517128 108 ntBASIC1.98□□□□□ -2.09
TRIM38O00635 IGHVIII-67-2-201ENST00000519849 88 ntBASIC1.98□□□□□ -2.09
TRIM38O00635 MIR4662B-201ENST00000579498 81 ntBASIC1.98□□□□□ -2.09
TRIM38O00635 TP73-AS1.1-201ENST00000611447 161 ntBASIC1.98□□□□□ -2.09
TRIM38O00635 Y_RNA.140-201ENST00000363474 103 ntBASIC1.97□□□□□ -2.09
TRIM38O00635 SNORA51.5-201ENST00000384126 131 ntBASIC1.97□□□□□ -2.09
TRIM38O00635 MIR583-201ENST00000384846 75 ntBASIC1.97□□□□□ -2.09
TRIM38O00635 RNA5SP109-201ENST00000391010 116 ntBASIC1.97□□□□□ -2.09
TRIM38O00635 SNORA40.18-201ENST00000391200 128 ntBASIC1.97□□□□□ -2.09
TRIM38O00635 SUMO2P12-201ENST00000405924 140 ntBASIC1.97□□□□□ -2.09
TRIM38O00635 ATP6V0E1P3-201ENST00000420036 246 ntBASIC1.97□□□□□ -2.09
TRIM38O00635 RNU6-341P-201ENST00000516973 96 ntBASIC1.97□□□□□ -2.09
TRIM38O00635 RNU6-1096P-201ENST00000517089 102 ntBASIC1.97□□□□□ -2.09
TRIM38O00635 AL358944.1-201ENST00000528537 144 ntBASIC1.97□□□□□ -2.09
TRIM38O00635 MIR3198-2-201ENST00000577868 80 ntBASIC1.97□□□□□ -2.09
TRIM38O00635 JPX_2.1-201ENST00000614161 69 ntBASIC1.97□□□□□ -2.09
TRIM38O00635 AL596211.1-201ENST00000569873 2277 ntBASIC1.97□□□□□ -2.09
TRIM38O00635 RNU6-888P-201ENST00000363010 101 ntBASIC1.96□□□□□ -2.1
TRIM38O00635 RNU6-1292P-201ENST00000383856 107 ntBASIC1.96□□□□□ -2.1
TRIM38O00635 RNU6-1014P-201ENST00000383940 103 ntBASIC1.96□□□□□ -2.1
TRIM38O00635 SNORA26.2-201ENST00000390922 122 ntBASIC1.96□□□□□ -2.1
TRIM38O00635 SNORD77.3-201ENST00000391113 65 ntBASIC1.96□□□□□ -2.1
TRIM38O00635 RNA5SP136-201ENST00000410906 107 ntBASIC1.96□□□□□ -2.1
TRIM38O00635 AL606517.2-201ENST00000442855 241 ntBASIC1.96□□□□□ -2.1
TRIM38O00635 RPL39P34-201ENST00000477141 156 ntBASIC1.96□□□□□ -2.1
TRIM38O00635 COX6CP6-201ENST00000490840 228 ntBASIC1.96□□□□□ -2.1
TRIM38O00635 RN7SL274P-201ENST00000492268 272 ntBASIC1.96□□□□□ -2.1
TRIM38O00635 Y_RNA.666-201ENST00000516187 112 ntBASIC1.96□□□□□ -2.1
TRIM38O00635 RNU6-504P-201ENST00000516568 104 ntBASIC1.96□□□□□ -2.1
TRIM38O00635 MIR4709-201ENST00000577272 72 ntBASIC1.96□□□□□ -2.1
TRIM38O00635 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC1.96□□□□□ -2.1
TRIM38O00635 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC1.96□□□□□ -2.1
TRIM38O00635 AL137067.1-201ENST00000615933 120 ntBASIC1.96□□□□□ -2.1
TRIM38O00635 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC1.96□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 109.9 ms