Protein–RNA interactions for Protein: Q9Y3X0

CCDC9, Coiled-coil domain-containing protein 9, humanhuman

Known RBP Predictions only

Length 531 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9Q9Y3X0 AC012493.3-201ENST00000604494 112 ntBASIC2.45□□□□□ -2.02
CCDC9Q9Y3X0 MIR502-201ENST00000606349 86 ntBASIC2.45□□□□□ -2.02
CCDC9Q9Y3X0 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC2.45□□□□□ -2.02
CCDC9Q9Y3X0 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC2.45□□□□□ -2.02
CCDC9Q9Y3X0 RNU6-704P-201ENST00000364162 103 ntBASIC2.44□□□□□ -2.02
CCDC9Q9Y3X0 Y_RNA.229-201ENST00000364347 113 ntBASIC2.44□□□□□ -2.02
CCDC9Q9Y3X0 SNORD50.2-201ENST00000365465 70 ntBASIC2.44□□□□□ -2.02
CCDC9Q9Y3X0 MIR526A1-201ENST00000384897 85 ntBASIC2.44□□□□□ -2.02
CCDC9Q9Y3X0 MIR15B-201ENST00000385045 98 ntBASIC2.44□□□□□ -2.02
CCDC9Q9Y3X0 MIR516B2-201ENST00000385190 85 ntBASIC2.44□□□□□ -2.02
CCDC9Q9Y3X0 MIR136-201ENST00000385207 82 ntBASIC2.44□□□□□ -2.02
CCDC9Q9Y3X0 RNU6-918P-201ENST00000391219 106 ntBASIC2.44□□□□□ -2.02
CCDC9Q9Y3X0 AC097716.1-201ENST00000509136 180 ntTSL 2 BASIC2.44□□□□□ -2.02
CCDC9Q9Y3X0 RNU7-200P-201ENST00000516105 62 ntBASIC2.44□□□□□ -2.02
CCDC9Q9Y3X0 AP001485.1-201ENST00000604799 199 ntBASIC2.44□□□□□ -2.02
CCDC9Q9Y3X0 RNU4-17P-201ENST00000365598 141 ntBASIC2.43□□□□□ -2.02
CCDC9Q9Y3X0 SNORD72-201ENST00000390994 80 ntBASIC2.43□□□□□ -2.02
CCDC9Q9Y3X0 Y_RNA.587-201ENST00000391210 103 ntBASIC2.43□□□□□ -2.02
CCDC9Q9Y3X0 AC015922.2-201ENST00000435593 184 ntBASIC2.43□□□□□ -2.02
CCDC9Q9Y3X0 AL021397.1-201ENST00000451806 248 ntBASIC2.43□□□□□ -2.02
CCDC9Q9Y3X0 RNU6-346P-201ENST00000516288 111 ntBASIC2.43□□□□□ -2.02
CCDC9Q9Y3X0 RNU7-149P-201ENST00000516739 59 ntBASIC2.43□□□□□ -2.02
CCDC9Q9Y3X0 MRPS18CP4-201ENST00000535821 231 ntBASIC2.43□□□□□ -2.02
CCDC9Q9Y3X0 MIR3144-201ENST00000579460 79 ntBASIC2.43□□□□□ -2.02
CCDC9Q9Y3X0 AL078603.1-201ENST00000603824 313 ntBASIC2.43□□□□□ -2.02
CCDC9Q9Y3X0 MIR6734-201ENST00000621166 68 ntBASIC2.43□□□□□ -2.02
CCDC9Q9Y3X0 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC2.43□□□□□ -2.02
CCDC9Q9Y3X0 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC2.42□□□□□ -2.02
CCDC9Q9Y3X0 Y_RNA.435-201ENST00000384095 112 ntBASIC2.42□□□□□ -2.02
CCDC9Q9Y3X0 RNU6-42P-201ENST00000384165 107 ntBASIC2.42□□□□□ -2.02
CCDC9Q9Y3X0 RNU6-804P-201ENST00000384286 107 ntBASIC2.42□□□□□ -2.02
CCDC9Q9Y3X0 RNU6-1081P-201ENST00000384537 107 ntBASIC2.42□□□□□ -2.02
CCDC9Q9Y3X0 RNU6-394P-201ENST00000410735 107 ntBASIC2.42□□□□□ -2.02
CCDC9Q9Y3X0 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC2.42□□□□□ -2.02
CCDC9Q9Y3X0 DEFB131B-201ENST00000530210 213 ntAPPRIS P1 TSL 1 (best) BASIC2.42□□□□□ -2.02
CCDC9Q9Y3X0 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC2.42□□□□□ -2.02
CCDC9Q9Y3X0 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC2.42□□□□□ -2.02
CCDC9Q9Y3X0 RNU6-923P-201ENST00000364753 107 ntBASIC2.41□□□□□ -2.02
CCDC9Q9Y3X0 Y_RNA.572-201ENST00000384757 98 ntBASIC2.41□□□□□ -2.02
CCDC9Q9Y3X0 AL353742.1-201ENST00000453455 224 ntTSL 3 BASIC2.41□□□□□ -2.02
CCDC9Q9Y3X0 AC090142.3-201ENST00000519012 385 ntBASIC2.41□□□□□ -2.02
CCDC9Q9Y3X0 MIR4662B-201ENST00000579498 81 ntBASIC2.41□□□□□ -2.02
CCDC9Q9Y3X0 AL357312.1-201ENST00000603879 298 ntBASIC2.41□□□□□ -2.02
CCDC9Q9Y3X0 GHRLOS.1-201ENST00000610995 70 ntBASIC2.41□□□□□ -2.02
CCDC9Q9Y3X0 Y_RNA.8-201ENST00000362353 102 ntBASIC2.4□□□□□ -2.03
CCDC9Q9Y3X0 Y_RNA.191-201ENST00000363972 113 ntBASIC2.4□□□□□ -2.03
CCDC9Q9Y3X0 RNU6-81P-201ENST00000365608 104 ntBASIC2.4□□□□□ -2.03
CCDC9Q9Y3X0 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC2.4□□□□□ -2.03
CCDC9Q9Y3X0 AC009474.2-201ENST00000451383 136 ntBASIC2.4□□□□□ -2.03
CCDC9Q9Y3X0 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC2.4□□□□□ -2.03
CCDC9Q9Y3X0 RNU6-126P-201ENST00000516685 103 ntBASIC2.4□□□□□ -2.03
CCDC9Q9Y3X0 RNA5SP480-201ENST00000516840 109 ntBASIC2.4□□□□□ -2.03
CCDC9Q9Y3X0 RNA5SP364-201ENST00000516938 78 ntBASIC2.4□□□□□ -2.03
CCDC9Q9Y3X0 MTND5P41-201ENST00000517498 206 ntBASIC2.4□□□□□ -2.03
CCDC9Q9Y3X0 AL512310.8-201ENST00000550183 120 ntBASIC2.4□□□□□ -2.03
CCDC9Q9Y3X0 AC108706.1-201ENST00000611053 297 ntBASIC2.4□□□□□ -2.03
CCDC9Q9Y3X0 AC104465.1-201ENST00000611365 139 ntBASIC2.4□□□□□ -2.03
CCDC9Q9Y3X0 Pinc.1-201ENST00000616452 154 ntBASIC2.4□□□□□ -2.03
CCDC9Q9Y3X0 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC2.4□□□□□ -2.03
CCDC9Q9Y3X0 MT-ATP8-201ENST00000361851 207 ntAPPRIS P1 BASIC2.39□□□□□ -2.03
CCDC9Q9Y3X0 RNU6-653P-201ENST00000363074 106 ntBASIC2.39□□□□□ -2.03
CCDC9Q9Y3X0 Y_RNA.308-201ENST00000365043 101 ntBASIC2.39□□□□□ -2.03
CCDC9Q9Y3X0 RNU6-1138P-201ENST00000365359 106 ntBASIC2.39□□□□□ -2.03
CCDC9Q9Y3X0 Y_RNA.398-201ENST00000383952 99 ntBASIC2.39□□□□□ -2.03
CCDC9Q9Y3X0 RNU6-1135P-201ENST00000411083 103 ntBASIC2.39□□□□□ -2.03
CCDC9Q9Y3X0 AC245047.8-201ENST00000456455 284 ntBASIC2.39□□□□□ -2.03
CCDC9Q9Y3X0 RNU6-1219P-201ENST00000516143 112 ntBASIC2.39□□□□□ -2.03
CCDC9Q9Y3X0 SNORD77.4-201ENST00000516158 81 ntBASIC2.39□□□□□ -2.03
CCDC9Q9Y3X0 RNY3P16-201ENST00000516338 101 ntBASIC2.39□□□□□ -2.03
CCDC9Q9Y3X0 AC024614.2-201ENST00000577584 372 ntBASIC2.39□□□□□ -2.03
CCDC9Q9Y3X0 MIR4308-201ENST00000580634 81 ntBASIC2.39□□□□□ -2.03
CCDC9Q9Y3X0 MIR616-201ENST00000385293 97 ntBASIC2.38□□□□□ -2.03
CCDC9Q9Y3X0 RN7SKP164-201ENST00000516138 266 ntBASIC2.38□□□□□ -2.03
CCDC9Q9Y3X0 MIR3664-201ENST00000579074 99 ntBASIC2.38□□□□□ -2.03
CCDC9Q9Y3X0 MIR4452-201ENST00000583004 71 ntBASIC2.38□□□□□ -2.03
CCDC9Q9Y3X0 AL391903.3-201ENST00000612158 163 ntBASIC2.38□□□□□ -2.03
CCDC9Q9Y3X0 AP000553.5-201ENST00000641933 54 ntBASIC2.38□□□□□ -2.03
CCDC9Q9Y3X0 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC2.37□□□□□ -2.03
CCDC9Q9Y3X0 RNU6-268P-201ENST00000364174 107 ntBASIC2.37□□□□□ -2.03
CCDC9Q9Y3X0 Y_RNA.441-201ENST00000384123 112 ntBASIC2.37□□□□□ -2.03
CCDC9Q9Y3X0 RNU6-717P-201ENST00000459076 104 ntBASIC2.37□□□□□ -2.03
CCDC9Q9Y3X0 RNU6-392P-201ENST00000364926 101 ntBASIC2.36□□□□□ -2.03
CCDC9Q9Y3X0 RNY3P5-201ENST00000384127 102 ntBASIC2.36□□□□□ -2.03
CCDC9Q9Y3X0 SNORD41-201ENST00000386967 70 ntBASIC2.36□□□□□ -2.03
CCDC9Q9Y3X0 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC2.36□□□□□ -2.03
CCDC9Q9Y3X0 RPL39P39-201ENST00000455840 151 ntBASIC2.36□□□□□ -2.03
CCDC9Q9Y3X0 RNU6-970P-201ENST00000516312 107 ntBASIC2.36□□□□□ -2.03
CCDC9Q9Y3X0 RN7SKP88-201ENST00000516847 250 ntBASIC2.36□□□□□ -2.03
CCDC9Q9Y3X0 7SK.8-201ENST00000612110 250 ntBASIC2.36□□□□□ -2.03
CCDC9Q9Y3X0 7SK.11-201ENST00000615477 250 ntBASIC2.36□□□□□ -2.03
CCDC9Q9Y3X0 7SK.13-201ENST00000622040 250 ntBASIC2.36□□□□□ -2.03
CCDC9Q9Y3X0 MTND1P7-201ENST00000632801 297 ntBASIC2.36□□□□□ -2.03
CCDC9Q9Y3X0 RNU6-1117P-201ENST00000384525 104 ntBASIC2.35□□□□□ -2.03
CCDC9Q9Y3X0 RNU6-381P-201ENST00000391259 108 ntBASIC2.35□□□□□ -2.03
CCDC9Q9Y3X0 RNA5SP338-201ENST00000410495 85 ntBASIC2.35□□□□□ -2.03
CCDC9Q9Y3X0 AC025033.1-201ENST00000463883 194 ntBASIC2.35□□□□□ -2.03
CCDC9Q9Y3X0 RNA5SP220-201ENST00000516298 104 ntBASIC2.35□□□□□ -2.03
CCDC9Q9Y3X0 AC006441.5-201ENST00000612680 209 ntBASIC2.35□□□□□ -2.03
CCDC9Q9Y3X0 AC015726.2-201ENST00000620112 122 ntBASIC2.35□□□□□ -2.03
CCDC9Q9Y3X0 snoU2_19.4-201ENST00000364329 80 ntBASIC2.34□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 257 ms