Protein–RNA interactions for Protein: Q9H2Z4

NKX2-4, Homeobox protein Nkx-2.4, humanhuman

Predictions only

Length 354 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-4Q9H2Z4 AC015922.2-201ENST00000435593 184 ntBASIC2.34□□□□□ -2.03
NKX2-4Q9H2Z4 RNA5SP445-201ENST00000515889 115 ntBASIC2.34□□□□□ -2.03
NKX2-4Q9H2Z4 RNA5SP236-201ENST00000516169 116 ntBASIC2.34□□□□□ -2.03
NKX2-4Q9H2Z4 RNU2-19P-201ENST00000517288 84 ntBASIC2.34□□□□□ -2.03
NKX2-4Q9H2Z4 AC021506.2-201ENST00000612354 169 ntBASIC2.34□□□□□ -2.03
NKX2-4Q9H2Z4 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC2.34□□□□□ -2.03
NKX2-4Q9H2Z4 MIR376A2-201ENST00000636782 80 ntBASIC2.34□□□□□ -2.03
NKX2-4Q9H2Z4 AKAP9-203ENST00000359028 12247 ntAPPRIS ALT2 TSL 5 BASIC2.34□□□□□ -2.03
NKX2-4Q9H2Z4 ENAM-201ENST00000396073 5679 ntAPPRIS P1 TSL 1 (best) BASIC2.34□□□□□ -2.04
NKX2-4Q9H2Z4 Y_RNA.355-201ENST00000365462 98 ntBASIC2.33□□□□□ -2.04
NKX2-4Q9H2Z4 SNORA2.2-201ENST00000365473 135 ntBASIC2.33□□□□□ -2.04
NKX2-4Q9H2Z4 SNORA17.3-201ENST00000391159 129 ntBASIC2.33□□□□□ -2.04
NKX2-4Q9H2Z4 SUMO1P4-201ENST00000429430 302 ntBASIC2.33□□□□□ -2.04
NKX2-4Q9H2Z4 AC087499.4-201ENST00000448505 178 ntBASIC2.33□□□□□ -2.04
NKX2-4Q9H2Z4 RNA5SP57-201ENST00000459463 123 ntBASIC2.33□□□□□ -2.04
NKX2-4Q9H2Z4 RNU6-772P-201ENST00000516042 105 ntBASIC2.33□□□□□ -2.04
NKX2-4Q9H2Z4 RNU6-1061P-201ENST00000516530 99 ntBASIC2.33□□□□□ -2.04
NKX2-4Q9H2Z4 SNORD36C-201ENST00000516733 66 ntBASIC2.33□□□□□ -2.04
NKX2-4Q9H2Z4 SCARNA15-202ENST00000516881 127 ntBASIC2.33□□□□□ -2.04
NKX2-4Q9H2Z4 AP003484.1-201ENST00000530974 250 ntBASIC2.33□□□□□ -2.04
NKX2-4Q9H2Z4 snoU13.31-201ENST00000607291 104 ntBASIC2.33□□□□□ -2.04
NKX2-4Q9H2Z4 AL513423.1-201ENST00000621695 132 ntBASIC2.33□□□□□ -2.04
NKX2-4Q9H2Z4 MIR6132-201ENST00000622083 109 ntBASIC2.33□□□□□ -2.04
NKX2-4Q9H2Z4 OR51A4-202ENST00000641898 4393 ntAPPRIS P1 BASIC2.32□□□□□ -2.04
NKX2-4Q9H2Z4 MIR21-201ENST00000362134 72 ntBASIC2.32□□□□□ -2.04
NKX2-4Q9H2Z4 SNORA25.6-201ENST00000364121 118 ntBASIC2.32□□□□□ -2.04
NKX2-4Q9H2Z4 Y_RNA.525-201ENST00000384570 113 ntBASIC2.32□□□□□ -2.04
NKX2-4Q9H2Z4 SNORD23.1-201ENST00000408212 104 ntBASIC2.32□□□□□ -2.04
NKX2-4Q9H2Z4 AL021397.1-201ENST00000451806 248 ntBASIC2.32□□□□□ -2.04
NKX2-4Q9H2Z4 SNORA18.7-201ENST00000516910 131 ntBASIC2.32□□□□□ -2.04
NKX2-4Q9H2Z4 RNU7-70P-201ENST00000516941 66 ntBASIC2.32□□□□□ -2.04
NKX2-4Q9H2Z4 RGPD6-201ENST00000329516 7165 ntAPPRIS P1 TSL 1 (best) BASIC2.31□□□□□ -2.04
NKX2-4Q9H2Z4 MIR452-201ENST00000385020 85 ntBASIC2.31□□□□□ -2.04
NKX2-4Q9H2Z4 Y_RNA.651-201ENST00000459380 103 ntBASIC2.31□□□□□ -2.04
NKX2-4Q9H2Z4 AC055731.1-201ENST00000474387 401 ntBASIC2.31□□□□□ -2.04
NKX2-4Q9H2Z4 RNU6-830P-201ENST00000516353 107 ntBASIC2.31□□□□□ -2.04
NKX2-4Q9H2Z4 RNA5SP200-201ENST00000516360 103 ntBASIC2.31□□□□□ -2.04
NKX2-4Q9H2Z4 SNORA31.17-201ENST00000516953 127 ntBASIC2.31□□□□□ -2.04
NKX2-4Q9H2Z4 Y_RNA.712-201ENST00000517011 92 ntBASIC2.31□□□□□ -2.04
NKX2-4Q9H2Z4 MIR3670-2-201ENST00000582974 65 ntBASIC2.31□□□□□ -2.04
NKX2-4Q9H2Z4 MIR3670-1-201ENST00000584160 65 ntBASIC2.31□□□□□ -2.04
NKX2-4Q9H2Z4 MIR3670-3-201ENST00000584855 65 ntBASIC2.31□□□□□ -2.04
NKX2-4Q9H2Z4 MIR3670-4-201ENST00000612260 65 ntBASIC2.31□□□□□ -2.04
NKX2-4Q9H2Z4 Y_RNA.563-201ENST00000384707 108 ntBASIC2.3□□□□□ -2.04
NKX2-4Q9H2Z4 MIR660-201ENST00000385235 97 ntBASIC2.3□□□□□ -2.04
NKX2-4Q9H2Z4 RNU6-938P-201ENST00000411285 103 ntBASIC2.3□□□□□ -2.04
NKX2-4Q9H2Z4 PGBD4P5-201ENST00000445958 426 ntBASIC2.3□□□□□ -2.04
NKX2-4Q9H2Z4 AC245517.4-201ENST00000448601 281 ntBASIC2.3□□□□□ -2.04
NKX2-4Q9H2Z4 AC093850.1-201ENST00000454121 251 ntBASIC2.3□□□□□ -2.04
NKX2-4Q9H2Z4 SNORD3E-202ENST00000627253 216 ntBASIC2.3□□□□□ -2.04
NKX2-4Q9H2Z4 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC2.3□□□□□ -2.04
NKX2-4Q9H2Z4 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC2.3□□□□□ -2.04
NKX2-4Q9H2Z4 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC2.3□□□□□ -2.04
NKX2-4Q9H2Z4 RICTOR-202ENST00000357387 9543 ntAPPRIS P1 TSL 1 (best) BASIC2.3□□□□□ -2.04
NKX2-4Q9H2Z4 ARHGAP5-202ENST00000345122 9604 ntAPPRIS P3 TSL 5 BASIC2.3□□□□□ -2.04
NKX2-4Q9H2Z4 AC131280.1-202ENST00000624067 4211 ntBASIC2.3□□□□□ -2.04
NKX2-4Q9H2Z4 LIFR-201ENST00000263409 10089 ntAPPRIS P1 TSL 1 (best) BASIC2.3□□□□□ -2.04
NKX2-4Q9H2Z4 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC2.29□□□□□ -2.04
NKX2-4Q9H2Z4 SNORA67.1-201ENST00000364749 141 ntBASIC2.29□□□□□ -2.04
NKX2-4Q9H2Z4 Y_RNA.440-201ENST00000384120 114 ntBASIC2.29□□□□□ -2.04
NKX2-4Q9H2Z4 MIR516B2-201ENST00000385190 85 ntBASIC2.29□□□□□ -2.04
NKX2-4Q9H2Z4 SNORA40.18-201ENST00000391200 128 ntBASIC2.29□□□□□ -2.04
NKX2-4Q9H2Z4 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC2.29□□□□□ -2.04
NKX2-4Q9H2Z4 AC099513.1-201ENST00000490423 301 ntBASIC2.29□□□□□ -2.04
NKX2-4Q9H2Z4 RNU6-113P-201ENST00000516653 101 ntBASIC2.29□□□□□ -2.04
NKX2-4Q9H2Z4 MIR3914-2-201ENST00000637339 95 ntBASIC2.29□□□□□ -2.04
NKX2-4Q9H2Z4 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC2.28□□□□□ -2.04
NKX2-4Q9H2Z4 MIR378A-201ENST00000362177 66 ntBASIC2.28□□□□□ -2.04
NKX2-4Q9H2Z4 MIR337-201ENST00000362281 93 ntBASIC2.28□□□□□ -2.04
NKX2-4Q9H2Z4 RNU6-834P-201ENST00000362367 110 ntBASIC2.28□□□□□ -2.04
NKX2-4Q9H2Z4 Y_RNA.353-201ENST00000365440 108 ntBASIC2.28□□□□□ -2.04
NKX2-4Q9H2Z4 RNU6-360P-201ENST00000390944 104 ntBASIC2.28□□□□□ -2.04
NKX2-4Q9H2Z4 RNU6ATAC38P-201ENST00000408119 126 ntBASIC2.28□□□□□ -2.04
NKX2-4Q9H2Z4 RNU6-321P-201ENST00000410912 106 ntBASIC2.28□□□□□ -2.04
NKX2-4Q9H2Z4 MIR4778-201ENST00000577635 80 ntBASIC2.28□□□□□ -2.04
NKX2-4Q9H2Z4 ZNF720P1-201ENST00000562403 1939 ntBASIC2.28□□□□□ -2.04
NKX2-4Q9H2Z4 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC2.28□□□□□ -2.05
NKX2-4Q9H2Z4 Y_RNA.241-201ENST00000364470 117 ntBASIC2.27□□□□□ -2.05
NKX2-4Q9H2Z4 SNORD58C-201ENST00000365223 64 ntBASIC2.27□□□□□ -2.05
NKX2-4Q9H2Z4 Y_RNA.351-201ENST00000365436 96 ntBASIC2.27□□□□□ -2.05
NKX2-4Q9H2Z4 RNU6-1056P-201ENST00000383996 107 ntBASIC2.27□□□□□ -2.05
NKX2-4Q9H2Z4 MIR136-201ENST00000385207 82 ntBASIC2.27□□□□□ -2.05
NKX2-4Q9H2Z4 TRAJ26-201ENST00000390511 60 ntAPPRIS P1 BASIC2.27□□□□□ -2.05
NKX2-4Q9H2Z4 AL627390.1-201ENST00000396055 340 ntBASIC2.27□□□□□ -2.05
NKX2-4Q9H2Z4 AC019129.1-201ENST00000403786 261 ntBASIC2.27□□□□□ -2.05
NKX2-4Q9H2Z4 Y_RNA.617-201ENST00000410920 90 ntBASIC2.27□□□□□ -2.05
NKX2-4Q9H2Z4 MTATP6P29-201ENST00000415057 132 ntBASIC2.27□□□□□ -2.05
NKX2-4Q9H2Z4 RNU7-80P-201ENST00000459562 61 ntBASIC2.27□□□□□ -2.05
NKX2-4Q9H2Z4 MIR8070-201ENST00000616510 88 ntBASIC2.27□□□□□ -2.05
NKX2-4Q9H2Z4 AC009831.4-201ENST00000620744 325 ntBASIC2.27□□□□□ -2.05
NKX2-4Q9H2Z4 U6.95-201ENST00000636931 70 ntBASIC2.27□□□□□ -2.05
NKX2-4Q9H2Z4 MIR424-201ENST00000362227 98 ntBASIC2.26□□□□□ -2.05
NKX2-4Q9H2Z4 RNA5SP276-201ENST00000362580 94 ntBASIC2.26□□□□□ -2.05
NKX2-4Q9H2Z4 RNA5SP393-201ENST00000363423 117 ntBASIC2.26□□□□□ -2.05
NKX2-4Q9H2Z4 RNU1-133P-201ENST00000364867 167 ntBASIC2.26□□□□□ -2.05
NKX2-4Q9H2Z4 SNORA40.5-201ENST00000391061 128 ntBASIC2.26□□□□□ -2.05
NKX2-4Q9H2Z4 MIR1267-201ENST00000408723 78 ntBASIC2.26□□□□□ -2.05
NKX2-4Q9H2Z4 AC011753.1-201ENST00000451001 220 ntBASIC2.26□□□□□ -2.05
NKX2-4Q9H2Z4 RN7SKP19-201ENST00000516016 252 ntBASIC2.26□□□□□ -2.05
NKX2-4Q9H2Z4 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC2.26□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 174.2 ms