Protein–RNA interactions for Protein: Q9H1J1

UPF3A, Regulator of nonsense transcripts 3A, humanhuman

Known RBP Predictions only

Length 476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3AQ9H1J1 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC1.3□□□□□ -2.2
UPF3AQ9H1J1 AL353742.1-201ENST00000453455 224 ntTSL 3 BASIC1.3□□□□□ -2.2
UPF3AQ9H1J1 AC120024.3-201ENST00000603167 156 ntBASIC1.3□□□□□ -2.2
UPF3AQ9H1J1 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC1.3□□□□□ -2.2
UPF3AQ9H1J1 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC1.29□□□□□ -2.2
UPF3AQ9H1J1 MT-ATP8-201ENST00000361851 207 ntAPPRIS P1 BASIC1.29□□□□□ -2.2
UPF3AQ9H1J1 RNU6-414P-201ENST00000363705 104 ntBASIC1.29□□□□□ -2.2
UPF3AQ9H1J1 Y_RNA.515-201ENST00000384535 112 ntBASIC1.29□□□□□ -2.2
UPF3AQ9H1J1 MIR526A1-201ENST00000384897 85 ntBASIC1.29□□□□□ -2.2
UPF3AQ9H1J1 RNU6-131P-201ENST00000391144 107 ntBASIC1.29□□□□□ -2.2
UPF3AQ9H1J1 SNORD77.4-201ENST00000516158 81 ntBASIC1.29□□□□□ -2.2
UPF3AQ9H1J1 SNORD45.4-201ENST00000516629 73 ntBASIC1.29□□□□□ -2.2
UPF3AQ9H1J1 SUMO2P16-201ENST00000519475 264 ntBASIC1.29□□□□□ -2.2
UPF3AQ9H1J1 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC1.29□□□□□ -2.2
UPF3AQ9H1J1 MIR2681-201ENST00000581814 105 ntBASIC1.29□□□□□ -2.2
UPF3AQ9H1J1 MIR4422-201ENST00000581938 83 ntBASIC1.29□□□□□ -2.2
UPF3AQ9H1J1 MIR4295-201ENST00000585286 85 ntBASIC1.29□□□□□ -2.2
UPF3AQ9H1J1 RNU2-4P-201ENST00000606190 192 ntBASIC1.29□□□□□ -2.2
UPF3AQ9H1J1 JPX_2.1-201ENST00000614161 69 ntBASIC1.29□□□□□ -2.2
UPF3AQ9H1J1 MIR8074-201ENST00000615081 81 ntBASIC1.29□□□□□ -2.2
UPF3AQ9H1J1 uc_338.4-201ENST00000616635 176 ntBASIC1.29□□□□□ -2.2
UPF3AQ9H1J1 MIR6788-201ENST00000618842 66 ntBASIC1.29□□□□□ -2.2
UPF3AQ9H1J1 RNU6-1123P-201ENST00000362347 106 ntBASIC1.28□□□□□ -2.2
UPF3AQ9H1J1 RNU6-484P-201ENST00000384016 107 ntBASIC1.28□□□□□ -2.2
UPF3AQ9H1J1 Y_RNA.571-201ENST00000384753 98 ntBASIC1.28□□□□□ -2.2
UPF3AQ9H1J1 RNU6-907P-201ENST00000390924 102 ntBASIC1.28□□□□□ -2.2
UPF3AQ9H1J1 Y_RNA.587-201ENST00000391210 103 ntBASIC1.28□□□□□ -2.2
UPF3AQ9H1J1 AL606845.1-201ENST00000404881 255 ntBASIC1.28□□□□□ -2.2
UPF3AQ9H1J1 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC1.28□□□□□ -2.2
UPF3AQ9H1J1 SNRPGP8-201ENST00000454064 226 ntBASIC1.28□□□□□ -2.2
UPF3AQ9H1J1 Y_RNA.644-201ENST00000459006 113 ntBASIC1.28□□□□□ -2.2
UPF3AQ9H1J1 AC087343.1-201ENST00000477341 475 ntBASIC1.28□□□□□ -2.2
UPF3AQ9H1J1 CYCTP-201ENST00000504253 315 ntBASIC1.28□□□□□ -2.2
UPF3AQ9H1J1 RN7SKP179-201ENST00000516126 217 ntBASIC1.28□□□□□ -2.2
UPF3AQ9H1J1 Y_RNA.674-201ENST00000516362 113 ntBASIC1.28□□□□□ -2.2
UPF3AQ9H1J1 RNU7-149P-201ENST00000516739 59 ntBASIC1.28□□□□□ -2.2
UPF3AQ9H1J1 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC1.28□□□□□ -2.2
UPF3AQ9H1J1 MIR151B-201ENST00000584249 96 ntBASIC1.28□□□□□ -2.2
UPF3AQ9H1J1 AL391903.3-201ENST00000612158 163 ntBASIC1.28□□□□□ -2.2
UPF3AQ9H1J1 AC027279.3-201ENST00000625055 122 ntBASIC1.28□□□□□ -2.2
UPF3AQ9H1J1 SNORD3E-202ENST00000627253 216 ntBASIC1.28□□□□□ -2.2
UPF3AQ9H1J1 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC1.27□□□□□ -2.21
UPF3AQ9H1J1 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.27□□□□□ -2.21
UPF3AQ9H1J1 Y_RNA.7-201ENST00000362352 102 ntBASIC1.27□□□□□ -2.21
UPF3AQ9H1J1 RNU6-833P-201ENST00000363486 107 ntBASIC1.27□□□□□ -2.21
UPF3AQ9H1J1 MIR1267-201ENST00000408723 78 ntBASIC1.27□□□□□ -2.21
UPF3AQ9H1J1 RNU6-847P-201ENST00000411115 108 ntBASIC1.27□□□□□ -2.21
UPF3AQ9H1J1 AC097716.1-201ENST00000509136 180 ntTSL 2 BASIC1.27□□□□□ -2.21
UPF3AQ9H1J1 RNU7-12P-201ENST00000516030 62 ntBASIC1.27□□□□□ -2.21
UPF3AQ9H1J1 RN7SKP164-201ENST00000516138 266 ntBASIC1.27□□□□□ -2.21
UPF3AQ9H1J1 RNU6-1219P-201ENST00000516143 112 ntBASIC1.27□□□□□ -2.21
UPF3AQ9H1J1 RNU6-917P-201ENST00000516294 104 ntBASIC1.27□□□□□ -2.21
UPF3AQ9H1J1 RNU6-1007P-201ENST00000516586 107 ntBASIC1.27□□□□□ -2.21
UPF3AQ9H1J1 RNU6-1223P-201ENST00000517124 104 ntBASIC1.27□□□□□ -2.21
UPF3AQ9H1J1 AC108706.1-201ENST00000611053 297 ntBASIC1.27□□□□□ -2.21
UPF3AQ9H1J1 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC1.27□□□□□ -2.21
UPF3AQ9H1J1 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.27□□□□□ -2.21
UPF3AQ9H1J1 RNU6-682P-201ENST00000363843 106 ntBASIC1.26□□□□□ -2.21
UPF3AQ9H1J1 RNU6-1138P-201ENST00000365359 106 ntBASIC1.26□□□□□ -2.21
UPF3AQ9H1J1 Y_RNA.412-201ENST00000384001 104 ntBASIC1.26□□□□□ -2.21
UPF3AQ9H1J1 Y_RNA.435-201ENST00000384095 112 ntBASIC1.26□□□□□ -2.21
UPF3AQ9H1J1 Y_RNA.785-201ENST00000384290 109 ntBASIC1.26□□□□□ -2.21
UPF3AQ9H1J1 RNU6-163P-201ENST00000384396 106 ntBASIC1.26□□□□□ -2.21
UPF3AQ9H1J1 Y_RNA.486-201ENST00000384398 107 ntBASIC1.26□□□□□ -2.21
UPF3AQ9H1J1 MIR7-2-201ENST00000384970 110 ntBASIC1.26□□□□□ -2.21
UPF3AQ9H1J1 MIR548J-201ENST00000408833 112 ntBASIC1.26□□□□□ -2.21
UPF3AQ9H1J1 AC092991.1-201ENST00000477176 376 ntBASIC1.26□□□□□ -2.21
UPF3AQ9H1J1 Z83818.1-201ENST00000603584 150 ntBASIC1.26□□□□□ -2.21
UPF3AQ9H1J1 AC106754.2-201ENST00000623006 233 ntBASIC1.26□□□□□ -2.21
UPF3AQ9H1J1 U6.106-201ENST00000636360 105 ntBASIC1.26□□□□□ -2.21
UPF3AQ9H1J1 RNU6-1084P-201ENST00000362498 107 ntBASIC1.25□□□□□ -2.21
UPF3AQ9H1J1 Y_RNA.91-201ENST00000363042 107 ntBASIC1.25□□□□□ -2.21
UPF3AQ9H1J1 SNORD45.3-201ENST00000363836 72 ntBASIC1.25□□□□□ -2.21
UPF3AQ9H1J1 RNU6-268P-201ENST00000364174 107 ntBASIC1.25□□□□□ -2.21
UPF3AQ9H1J1 snoU2-30.1-201ENST00000365012 70 ntBASIC1.25□□□□□ -2.21
UPF3AQ9H1J1 MIR513A1-201ENST00000385138 129 ntBASIC1.25□□□□□ -2.21
UPF3AQ9H1J1 MIR613-201ENST00000385248 95 ntBASIC1.25□□□□□ -2.21
UPF3AQ9H1J1 RNU6-578P-201ENST00000390980 103 ntBASIC1.25□□□□□ -2.21
UPF3AQ9H1J1 RNU6-1228P-201ENST00000391014 107 ntBASIC1.25□□□□□ -2.21
UPF3AQ9H1J1 Y_RNA.622-201ENST00000411091 108 ntBASIC1.25□□□□□ -2.21
UPF3AQ9H1J1 RNU6-113P-201ENST00000516653 101 ntBASIC1.25□□□□□ -2.21
UPF3AQ9H1J1 RNA5SP480-201ENST00000516840 109 ntBASIC1.25□□□□□ -2.21
UPF3AQ9H1J1 SNORA81.3-201ENST00000517283 198 ntBASIC1.25□□□□□ -2.21
UPF3AQ9H1J1 AC090142.3-201ENST00000519012 385 ntBASIC1.25□□□□□ -2.21
UPF3AQ9H1J1 AC109810.1-201ENST00000534066 224 ntBASIC1.25□□□□□ -2.21
UPF3AQ9H1J1 MIR4744-201ENST00000581563 82 ntBASIC1.25□□□□□ -2.21
UPF3AQ9H1J1 AC087685.1-201ENST00000587507 141 ntBASIC1.25□□□□□ -2.21
UPF3AQ9H1J1 AC004792.1-201ENST00000614523 137 ntBASIC1.25□□□□□ -2.21
UPF3AQ9H1J1 Pinc.1-201ENST00000616452 154 ntBASIC1.25□□□□□ -2.21
UPF3AQ9H1J1 MIR6515-201ENST00000619843 57 ntBASIC1.25□□□□□ -2.21
UPF3AQ9H1J1 Y_RNA.121-201ENST00000363309 113 ntBASIC1.24□□□□□ -2.21
UPF3AQ9H1J1 RNU6-1020P-201ENST00000363684 107 ntBASIC1.24□□□□□ -2.21
UPF3AQ9H1J1 Y_RNA.233-201ENST00000364407 101 ntBASIC1.24□□□□□ -2.21
UPF3AQ9H1J1 SNORD1A-201ENST00000364968 72 ntBASIC1.24□□□□□ -2.21
UPF3AQ9H1J1 MIR548A2-201ENST00000384956 97 ntBASIC1.24□□□□□ -2.21
UPF3AQ9H1J1 MIR891A-201ENST00000401237 79 ntBASIC1.24□□□□□ -2.21
UPF3AQ9H1J1 RNU2-64P-201ENST00000411315 191 ntBASIC1.24□□□□□ -2.21
UPF3AQ9H1J1 MTND5P15-201ENST00000434246 349 ntBASIC1.24□□□□□ -2.21
UPF3AQ9H1J1 snoU13.9-201ENST00000458927 103 ntBASIC1.24□□□□□ -2.21
UPF3AQ9H1J1 RNU7-120P-201ENST00000459334 63 ntBASIC1.24□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 155.8 ms